Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen12g029280 Solanum pennellii HOM05D005519 ORTHO05D006423 1.1e-81 306.6 157 100.0
Solyc12g056620.2 Solanum lycopersicum HOM05D005519 ORTHO05D006423 2.1e-80 302.4 157 98.1
PGSC0003DMG400018793 Solanum tuberosum HOM05D005519 ORTHO05D006423 1.8e-76 289.3 157 93.6
CAN.G26.8 Capsicum annuum HOM05D005519 ORTHO05D006423 5.3e-60 234.6 172 76.2
Nitab4.5_0001103g0040 Nicotiana tabacum HOM05D005519 ORTHO05D006423 5.1e-55 218.0 170 72.4
Nitab4.5_0000872g0010 Nicotiana tabacum HOM05D005519 ORTHO05D006423 1.3e-53 213.4 167 71.3
Peaxi162Scf00160g01746 Petunia axillaris HOM05D005519 ORTHO05D006423 2.2e-50 202.6 171 66.7
Hma1.2p1_0358F.1_g134710 Hydrangea macrophylla HOM05D005519 ORTHO05D006423 3.8e-50 201.8 184 65.2
PGSC0003DMG400025068 Solanum tuberosum HOM05D005519 ORTHO05D006423 6.5e-50 201.1 174 68.4
Sopen04g027910 Solanum pennellii HOM05D005519 ORTHO05D006423 1.4e-49 199.9 171 67.8
CiPaw.15G012900 Carya illinoinensis HOM05D005519 ORTHO05D006423 5.5e-49 198.0 180 63.9
Solyc04g071930.4 Solanum lycopersicum HOM05D005519 ORTHO05D006423 9.4e-49 197.2 173 67.1
Nitab4.5_0002812g0030 Nicotiana tabacum HOM05D005519 ORTHO05D006423 1.2e-48 196.8 167 68.3
Peaxi162Scf00360g00028 Petunia axillaris HOM05D005519 ORTHO05D006423 2.3e-47 192.6 159 67.3
Phvul.004G091300 Phaseolus vulgaris HOM05D005519 ORTHO05D006423 6.7e-47 191.0 186 59.7
CiPaw.16G008800 Carya illinoinensis HOM05D005519 ORTHO05D006423 8.8e-47 190.7 149 67.1
Glyma.20G169500 Glycine max HOM05D005519 ORTHO05D006423 2.0e-46 189.5 176 62.5
CAN.G495.8 Capsicum annuum HOM05D005519 ORTHO05D006423 2.6e-46 189.1 162 66.0
Cfa018287 Carpinus fangiana HOM05D005519 ORTHO05D006423 5.7e-46 188.0 149 68.5
Migut.C00964 Erythranthe guttata HOM05D005519 ORTHO05D006423 5.7e-46 188.0 165 63.6
MSTRG.25301 Avicennia marina HOM05D005519 ORTHO05D006423 7.4e-46 187.6 179 63.1
Ca_10667_v3 Cicer arietinum L. HOM05D005519 ORTHO05D006423 9.7e-46 187.2 179 59.8
Cc10_g15180 Coffea canephora HOM05D005519 ORTHO05D006423 1.3e-45 186.8 191 59.2
Glyma.10G222100 Glycine max HOM05D005519 ORTHO05D006423 1.7e-45 186.4 179 62.0
Lj7A382T71 Lonicera japonica HOM05D005519 ORTHO05D006423 2.2e-45 186.0 173 61.8
vmacro01488 Vaccinium macrocarpon HOM05D005519 ORTHO05D006423 2.8e-45 185.7 177 65.0
Migut.N03201 Erythranthe guttata HOM05D005519 ORTHO05D006423 4.8e-45 184.9 161 65.2
TWI32G0061 Tripterygium wilfordii HOM05D005519 ORTHO05D006423 4.8e-45 184.9 178 62.9
Nitab4.5_0000099g0170 Nicotiana tabacum HOM05D005519 ORTHO05D006423 6.3e-45 184.5 171 64.9
DCAR_001160 Daucus carota HOM05D005519 ORTHO05D006423 1.4e-44 183.3 170 61.2
Rhsim11G0087200 Rhododendron simsii HOM05D005519 ORTHO05D006423 1.4e-44 183.3 185 58.9
Glyma.02G079400 Glycine max HOM05D005519 ORTHO05D006423 1.8e-44 183.0 188 58.5
Psat6g190880 Pisum sativum HOM05D005519 ORTHO05D006423 1.8e-44 183.0 178 60.1
unitig_26.g9895 Utricularia gibba HOM05D005519 ORTHO05D006423 1.8e-44 183.0 159 64.8
Glyma.16G163800 Glycine max HOM05D005519 ORTHO05D006423 2.4e-44 182.6 151 66.2
Lsat_1_v5_gn_9_42101 Lactuca sativa HOM05D005519 ORTHO05D006423 2.4e-44 182.6 167 62.9
TAR381G0167 Trochodendron aralioides HOM05D005519 ORTHO05D006423 2.4e-44 182.6 177 62.1
Lalb_Chr19g0130091 Lupinus albus HOM05D005519 ORTHO05D006423 3.1e-44 182.2 176 61.9
Potri.005G196100 Populus trichocarpa HOM05D005519 ORTHO05D006423 3.1e-44 182.2 154 65.6
Potri.002G065000 Populus trichocarpa HOM05D005519 ORTHO05D006423 6.9e-44 181.0 148 65.5
Duzib116G0927 Durio zibethinus HOM05D005519 ORTHO05D006423 1.2e-43 180.3 180 55.6
QL02p037831 Quercus lobata HOM05D005519 ORTHO05D006423 1.2e-43 180.3 146 69.2
Sabra02G0051900 Salix brachista HOM05D005519 ORTHO05D006423 1.2e-43 180.3 192 56.8
CSS0002205 Camellia sinensis var. sinensis HOM05D005519 ORTHO05D006423 2.0e-43 179.5 176 60.2
Thecc.08G158600 Theobroma cacao HOM05D005519 ORTHO05D006423 2.0e-43 179.5 186 55.9
Cpa.g.sc49.79 Carica papaya HOM05D005519 ORTHO05D006423 2.6e-43 179.1 158 62.7
VMungo0464G1678 Vigna mungo HOM05D005519 ORTHO05D006423 2.6e-43 179.1 188 56.4
VMungo0720G0436 Vigna mungo HOM05D005519 ORTHO05D006423 2.6e-43 179.1 179 58.7
Haze_17800 Corylus avellana HOM05D005519 ORTHO05D006423 3.4e-43 178.7 146 66.4
CANSAT25G1666 Cannabis sativa HOM05D005519 ORTHO05D006423 5.9e-43 177.9 135 71.1
Phvul.007G083000 Phaseolus vulgaris HOM05D005519 ORTHO05D006423 5.9e-43 177.9 175 58.9
Lsat_1_v5_gn_6_101660 Lactuca sativa HOM05D005519 ORTHO05D006423 1.0e-42 177.2 142 66.2
Lalb_Chr03g0035541 Lupinus albus HOM05D005519 ORTHO05D006423 1.0e-42 177.2 173 61.3
Manes.02G182800 Manihot esculenta HOM05D005519 ORTHO05D006423 1.3e-42 176.8 161 62.7
PGR042G3808 Punica granatum HOM05D005519 ORTHO05D006423 1.3e-42 176.8 193 57.5
Dinv25895 Davidia involucrata HOM05D005519 ORTHO05D006423 2.2e-42 176.0 179 59.2
Manes.18G094400 Manihot esculenta HOM05D005519 ORTHO05D006423 2.2e-42 176.0 142 67.6
QL02p038173 Quercus lobata HOM05D005519 ORTHO05D006423 2.2e-42 176.0 158 65.2
RcHm_v2.0_Chr6g0274331 Rosa chinensis HOM05D005519 ORTHO05D006423 2.2e-42 176.0 188 58.5
MD05G1032800 Malus domestica HOM05D005519 ORTHO05D006423 2.9e-42 175.6 193 57.0
Prupe.8G039900 Prunus persica HOM05D005519 ORTHO05D006423 2.9e-42 175.6 192 57.3
TPR.G17016 Trifolium pratense HOM05D005519 ORTHO05D006423 3.8e-42 175.3 184 58.2
FvH4_2g13070 Fragaria vesca HOM05D005519 ORTHO05D006423 6.5e-42 174.5 188 58.5
Gohir.D02G068600 Gossypium hirsutum HOM05D005519 ORTHO05D006423 6.5e-42 174.5 140 65.0
THA.LOC104825113 Tarenaya hassleriana HOM05D005519 ORTHO05D006423 8.5e-42 174.1 154 61.0
Lj2g0026694 Lotus japonicus HOM05D005519 ORTHO05D006423 1.9e-41 172.9 170 60.6
Lj4A703G50 Lonicera japonica HOM05D005519 ORTHO05D006423 3.2e-41 172.2 145 64.8
SGA_v2.0_scaffold108G30869 Striga asiatica HOM05D005519 ORTHO05D006423 3.2e-41 172.2 130 72.3
Gohir.A05G246000 Gossypium hirsutum HOM05D005519 ORTHO05D006423 7.2e-41 171.0 152 61.2
Aa31LG6G8220 Aethionema arabicum HOM05D005519 ORTHO05D006423 1.2e-40 170.2 148 64.2
Sabra05G0149500 Salix brachista HOM05D005519 ORTHO05D006423 1.2e-40 170.2 152 63.8
MD10G1033800 Malus domestica HOM05D005519 ORTHO05D006423 1.6e-40 169.9 193 55.4
Nn5g28816 Nelumbo nucifera HOM05D005519 ORTHO05D006423 1.6e-40 169.9 195 54.4
TWI34G0476 Tripterygium wilfordii HOM05D005519 ORTHO05D006423 1.6e-40 169.9 185 58.4
Gohir.D05G247500 Gossypium hirsutum HOM05D005519 ORTHO05D006423 2.1e-40 169.5 152 60.5
arahy.Tifrunner.gnm1.ann1.8F5AL7 Arachis hypogaea HOM05D005519 ORTHO05D006423 2.7e-40 169.1 147 68.0
arahy.Tifrunner.gnm1.ann1.SKG6R6 Arachis hypogaea HOM05D005519 ORTHO05D006423 2.7e-40 169.1 147 68.0
AT1G34000 Arabidopsis thaliana HOM05D005519 ORTHO05D006423 3.6e-40 168.7 146 65.8
Gorai.009G258300 Gossypium raimondii HOM05D005519 ORTHO05D006423 3.6e-40 168.7 152 60.5
Medtr1g098280 Medicago truncatula HOM05D005519 ORTHO05D006423 4.7e-40 168.3 178 56.2
Sed0015682 Sechium edule HOM05D005519 ORTHO05D006423 4.7e-40 168.3 142 65.5
THA.LOC104806763 Tarenaya hassleriana HOM05D005519 ORTHO05D006423 6.1e-40 167.9 182 54.9
ClCG08G008840 Citrullus lanatus HOM05D005519 ORTHO05D006423 7.9e-40 167.5 144 65.3
Duzib093G1843 Durio zibethinus HOM05D005519 ORTHO05D006423 7.9e-40 167.5 185 54.6
Gorai.005G077500 Gossypium raimondii HOM05D005519 ORTHO05D006423 7.9e-40 167.5 143 62.9
FAN24G1125 Fragaria x ananassa HOM05D003947 ORTHO05D004614 1.0e-39 167.2 136 68.4
HPP92_000679 Vanilla planifolia HOM05D005519 ORTHO05D006423 2.3e-39 166.0 169 56.2
AL1G48440 Arabidopsis lyrata HOM05D005519 ORTHO05D006423 3.9e-39 165.2 143 64.3
BolC6t36346H Brassica oleracea HOM05D005519 ORTHO05D006423 5.2e-39 164.9 173 59.5
HanXRQChr11g0320251 Helianthus annuus HOM05D005519 ORTHO05D006423 8.8e-39 164.1 144 66.0
BcaC08g43825 Brassica carinata HOM05D005519 ORTHO05D006423 1.1e-38 163.7 173 59.0
ECA246G0665 Erigeron canadensis HOM05D003947 ORTHO05D006423 1.1e-38 163.7 122 73.8
FAN15G1092 Fragaria x ananassa HOM05D003947 ORTHO05D004614 1.1e-38 163.7 136 66.9
Atru.chr13.2018 Acer truncatum HOM05D005519 ORTHO05D006423 2.0e-38 162.9 144 65.3
Lj5g0019555 Lotus japonicus HOM05D005519 ORTHO05D006423 2.0e-38 162.9 188 55.9
CsaV3_6G005050 Cucumis sativus L. HOM05D005519 ORTHO05D006423 2.6e-38 162.5 137 65.7
A08p08390 Brassica napus HOM05D005519 ORTHO05D006423 7.4e-38 161.0 171 57.3
BraA08t32855Z Brassica rapa HOM05D005519 ORTHO05D006423 7.4e-38 161.0 171 57.3
BraA09t38789Z Brassica rapa HOM05D005519 ORTHO05D006423 7.4e-38 161.0 163 59.5
BcaB04g17909 Brassica carinata HOM05D005519 ORTHO05D006423 1.7e-37 159.8 154 59.1
PSO541G5828 Papaver somniferum HOM05D005519 ORTHO05D006423 1.7e-37 159.8 189 51.9
Thhalv10008704m.g Eutrema salsugineum HOM05D005519 ORTHO05D006423 2.2e-37 159.5 143 62.2
Carub.0001s3208 Capsella rubella HOM05D005519 ORTHO05D006423 3.7e-37 158.7 147 64.6
Ciclev10002625m.g Citrus clementina HOM05D005519 ORTHO05D006423 8.2e-37 157.5 185 53.5
Ah.05g168160 Amaranthus hybridus HOM05D005519 ORTHO05D006423 1.1e-36 157.1 179 53.6
A09p32470 Brassica napus HOM05D005519 ORTHO05D006423 1.4e-36 156.8 160 58.1
BcaB07g33022 Brassica carinata HOM05D005519 ORTHO05D006423 1.8e-36 156.4 146 62.3
FAN27G0467 Fragaria x ananassa HOM05D005519 ORTHO05D006423 1.8e-36 156.4 174 56.9
GSVIVG01034578001 Vitis vinifera HOM05D005519 ORTHO05D006423 1.8e-36 156.4 89 86.5
CDE04G2354 Ceratophyllum demersum HOM05D005519 ORTHO05D006423 2.4e-36 156.0 182 53.8
BolC8t47881H Brassica oleracea HOM05D005519 ORTHO05D006423 3.1e-36 155.6 172 55.2
PSO675G0400 Papaver somniferum HOM05D005519 ORTHO05D006423 3.1e-36 155.6 190 51.1
Sc26g0002910 Simmondsia chinensis HOM05D005519 ORTHO05D006423 5.3e-36 154.8 137 61.3
ATR0580G316 Amborella trichopoda HOM05D005519 ORTHO05D006423 7.0e-36 154.5 137 62.0
MBI04_g08940_MAGBIO Magnolia biondii HOM05D005519 ORTHO05D006423 7.0e-36 154.5 177 53.7
C06p12090 Brassica napus HOM05D005519 ORTHO05D006423 9.1e-36 154.1 144 63.2
Sed0018725 Sechium edule HOM05D005519 ORTHO05D006423 1.6e-35 153.3 125 68.0
CARHR033380 Cardamine hirsuta HOM05D005519 ORTHO05D006423 5.9e-35 151.4 146 59.6
Zm00001eb357520 Zea mays HOM05D005519 ORTHO05D006423 1.3e-34 150.2 189 51.3
MSTRG.1105 Avicennia marina HOM05D000084 ORTHO05D006423 1.7e-34 149.8 155 56.1
Zm00001eb160790 Zea mays HOM05D005519 ORTHO05D006423 8.5e-34 147.5 177 51.4
Sp1g29260 Schrenkiella parvula HOM05D005519 ORTHO05D006423 4.7e-32 141.7 186 48.4
AUR62026639 Chenopodium quinoa HOM05D003947 ORTHO05D004614 6.1e-32 141.4 110 67.3
Nn1g06007 Nelumbo nucifera HOM05D005519 ORTHO05D006423 6.1e-32 141.4 174 52.9
AUR62034898 Chenopodium quinoa HOM05D005519 ORTHO05D006423 3.1e-28 129.0 75 81.3
Os01g0589800 Oryza sativa ssp. japonica HOM05D005519 ORTHO05D006423 1.6e-27 126.7 70 84.3
COL.COLO4_03361 Corchorus olitorius HOM05D005519 ORTHO05D006423 2.7e-27 125.9 69 82.6
Actinidia17771 Actinidia chinensis HOM05D005519 ORTHO05D006423 1.6e-24 116.7 100 61.0
AagrBONN_evm.TU.Sc2ySwM_117.629 Anthoceros agrestis HOM05D005519 ORTHO05D006423 6.1e-24 114.8 148 48.0
Mapoly0065s0010 Marchantia polymorpha HOM05D005519 ORTHO05D006423 3.0e-23 112.5 82 65.9
Dinv41044 Davidia involucrata HOM05D005519 ORTHO05D006423 4.0e-23 112.1 142 52.1
Oeu051280.1 Olea europaea HOM05D005519 ORTHO05D006423 5.2e-23 111.7 150 51.3
CBR_g32244 Chara braunii HOM05D005519 ORTHO05D006423 1.7e-21 106.7 134 46.3
SMO139G0065 Selaginella moellendorffii HOM05D005519 ORTHO05D006423 1.4e-20 103.6 177 41.2
BraA05t21288Z Brassica rapa HOM05D003947 ORTHO05D006423 2.4e-20 102.8 67 76.1
A05p24090 Brassica napus HOM05D011378 ORTHO05D006423 4.1e-20 102.1 105 58.1
Cre06.g251150 Chlamydomonas reinhardtii HOM05D005519 ORTHO05D006423 1.3e-18 97.1 82 58.5
MCO05G699 Micromonas commoda HOM05D005519 ORTHO05D006423 9.5e-17 90.9 80 51.2
MELO3C029825.2 Cucumis melo HOM05D005519 ORTHO05D006423 8.0e-16 87.8 113 49.6
CSS0025090 Camellia sinensis var. sinensis HOM05D005519 ORTHO05D006423 1.4e-15 87.0 81 63.0
Hund30143 Selenicereus undatus HOM05D005519 ORTHO05D006423 6.8e-15 84.7 144 41.0
Eucgr.L00901 Eucalyptus grandis HOM05D005519 ORTHO05D006423 4.5e-11 72.0 127 42.5
PRCOL_00003386 Prasinoderma coloniale HOM05D005519 ORTHO05D006423 2.5e-09 66.2 64 51.6
Pp3c1_8300 Physcomitrium patens HOM05D005519 ORTHO05D006423 1.8e-07 60.1 39 64.1
Pp3c2_26700 Physcomitrium patens HOM05D005519 ORTHO05D006423 1.5e-06 57.0 110 37.3
unitig_749.g13910 Utricularia gibba HOM05D005519 ORTHO05D006423 5.8e-06 55.1 102 40.2


User provided reference genes

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