Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen12g029120 Solanum pennellii HOM05D003652 ORTHO05D004190 0.0e+00 1384.4 746 100.0
Solyc12g056520.3 Solanum lycopersicum HOM05D003652 ORTHO05D004190 0.0e+00 1102.4 645 89.3
CAN.G89.17 Capsicum annuum HOM05D003652 ORTHO05D004190 3.2e-304 1048.1 764 75.1
Nitab4.5_0000140g0050 Nicotiana tabacum HOM05D003652 ORTHO05D004190 1.1e-264 916.8 655 75.7
Nitab4.5_0005705g0020 Nicotiana tabacum HOM05D003652 ORTHO05D004190 1.0e-254 883.6 784 63.4
Peaxi162Scf00765g00049 Petunia axillaris HOM05D003652 ORTHO05D004190 3.0e-254 882.1 775 62.8
Nitab4.5_0005926g0010 Nicotiana tabacum HOM05D003652 ORTHO05D004190 3.7e-252 875.2 784 65.3
CSS0021982 Camellia sinensis var. sinensis HOM05D003652 ORTHO05D004190 1.3e-249 866.7 769 63.6
Dinv25854 Davidia involucrata HOM05D003652 ORTHO05D004190 7.2e-248 860.9 776 62.5
CAN.G268.10 Capsicum annuum HOM05D003652 ORTHO05D004190 3.0e-246 855.5 660 68.3
Actinidia29525 Actinidia chinensis HOM05D003652 ORTHO05D004190 6.7e-246 854.4 762 61.8
Sopen04g027310 Solanum pennellii HOM05D003652 ORTHO05D004190 2.2e-244 849.4 783 61.6
Peaxi162Scf01294g00125 Petunia axillaris HOM05D003652 ORTHO05D004190 3.7e-244 848.6 632 73.3
Solyc04g071350.3 Solanum lycopersicum HOM05D003652 ORTHO05D004190 2.4e-243 845.9 785 61.1
Actinidia10649 Actinidia chinensis HOM05D003652 ORTHO05D004190 2.9e-241 839.0 795 60.5
Potri.002G068900 Populus trichocarpa HOM05D003652 ORTHO05D004190 2.9e-241 839.0 782 63.4
GSVIVG01034519001 Vitis vinifera HOM05D003652 ORTHO05D004190 3.6e-239 832.0 772 60.1
TAR376G0660 Trochodendron aralioides HOM05D003652 ORTHO05D004190 5.7e-237 824.7 778 60.7
MD07G1075500 Malus domestica HOM05D003652 ORTHO05D004190 3.7e-236 822.0 780 59.5
Dinv41091 Davidia involucrata HOM05D003652 ORTHO05D004190 1.4e-235 820.1 628 68.0
Potri.005G191500 Populus trichocarpa HOM05D003652 ORTHO05D004190 5.3e-235 818.1 657 64.8
Thecc.08G150000 Theobroma cacao HOM05D003652 ORTHO05D004190 1.5e-234 816.6 774 59.2
TAR628G0150 Trochodendron aralioides HOM05D003652 ORTHO05D004190 2.6e-234 815.8 782 61.3
Prupe.8G058700 Prunus persica HOM05D003652 ORTHO05D004190 5.0e-233 811.6 656 64.5
Ciclev10000108m.g Citrus clementina HOM05D003652 ORTHO05D004190 3.6e-231 805.4 758 58.4
CsaV3_7G024680 Cucumis sativus L. HOM05D003652 ORTHO05D004190 5.2e-230 801.6 774 58.5
RcHm_v2.0_Chr1g0332001 Rosa chinensis HOM05D003652 ORTHO05D004190 8.8e-230 800.8 771 58.1
PGR042G2936 Punica granatum HOM05D003652 ORTHO05D004190 1.5e-229 800.0 779 58.0
Rhsim08G0021800 Rhododendron simsii HOM05D003652 ORTHO05D004190 2.0e-229 799.7 869 54.4
Atru.chr13.2145 Acer truncatum HOM05D003652 ORTHO05D004190 2.6e-229 799.3 755 59.1
Duzib116G0402 Durio zibethinus HOM05D003652 ORTHO05D004190 4.4e-229 798.5 770 58.8
TWI34G0668 Tripterygium wilfordii HOM05D003652 ORTHO05D004190 7.4e-229 797.7 777 58.0
Aqoxy5G02100 Aquilegia oxysepala HOM05D003652 ORTHO05D004190 1.7e-228 796.6 783 57.2
FvH4_7g05280 Fragaria vesca HOM05D003652 ORTHO05D004190 2.8e-228 795.8 762 59.1
Nn5g28722 Nelumbo nucifera HOM05D003652 ORTHO05D004190 1.1e-227 793.9 663 63.7
Cpa.g.sc21.193 Carica papaya HOM05D003652 ORTHO05D004190 1.8e-227 793.1 772 60.8
CANSAT25G1176 Cannabis sativa HOM05D003652 ORTHO05D004190 2.4e-227 792.7 781 57.7
Eucgr.F04242 Eucalyptus grandis HOM05D003652 ORTHO05D004190 4.1e-227 792.0 658 63.5
MELO3C024093.2 Cucumis melo HOM05D003652 ORTHO05D004190 1.2e-226 790.4 772 57.9
Nn1g06100 Nelumbo nucifera HOM05D003652 ORTHO05D004190 1.2e-226 790.4 763 58.6
Gorai.005G079300 Gossypium raimondii HOM05D003652 ORTHO05D004190 4.5e-226 788.5 655 64.6
MSTRG.22372 Avicennia marina HOM05D003652 ORTHO05D004190 2.9e-225 785.8 774 56.8
Gohir.A02G064300 Gossypium hirsutum HOM05D003652 ORTHO05D004190 8.5e-225 784.3 655 64.3
QL02p033637 Quercus lobata HOM05D003652 ORTHO05D004190 2.5e-224 782.7 692 61.4
Gohir.D02G070200 Gossypium hirsutum HOM05D003652 ORTHO05D004190 4.2e-224 781.9 655 64.1
Sed0009622 Sechium edule HOM05D003652 ORTHO05D004190 9.4e-224 780.8 761 58.5
Sabra02G0054200 Salix brachista HOM05D003652 ORTHO05D004190 2.1e-223 779.6 876 55.3
Lj7C372G9 Lonicera japonica HOM05D003652 ORTHO05D004190 2.7e-223 779.2 703 60.5
Haze_22519 Corylus avellana HOM05D003652 ORTHO05D004190 2.3e-222 776.2 805 55.8
Sc02g0004140 Simmondsia chinensis HOM05D003652 ORTHO05D004190 3.0e-222 775.8 655 63.1
CiPaw.07G160100 Carya illinoinensis HOM05D003652 ORTHO05D004190 2.6e-221 772.7 659 62.1
TWI60G1418 Tripterygium wilfordii HOM05D003652 ORTHO05D004190 3.4e-221 772.3 659 62.8
Oeu011939.2 Olea europaea HOM05D003652 ORTHO05D004190 1.3e-220 770.4 831 53.8
Medtr1g096550 Medicago truncatula HOM05D003652 ORTHO05D004190 2.8e-220 769.2 765 57.3
Ca_10620_v3 Cicer arietinum L. HOM05D003652 ORTHO05D004190 4.8e-220 768.5 778 55.8
Cfa013845 Carpinus fangiana HOM05D003652 ORTHO05D004190 8.3e-220 767.7 633 64.1
Lsat_1_v5_gn_7_71861 Lactuca sativa HOM05D003652 ORTHO05D004190 1.8e-219 766.5 763 56.4
FAN03G2156 Fragaria x ananassa HOM05D003652 ORTHO05D004190 4.1e-219 765.4 823 54.8
FAN06G2696 Fragaria x ananassa HOM05D003652 ORTHO05D004190 9.1e-219 764.2 823 54.7
FAN01G0918 Fragaria x ananassa HOM05D003652 ORTHO05D004190 1.2e-218 763.8 823 54.7
Migut.N03225 Erythranthe guttata HOM05D003652 ORTHO05D004190 3.5e-218 762.3 778 55.5
SGA_v2.0_scaffold25G11172 Striga asiatica HOM05D003652 ORTHO05D004190 8.5e-217 757.7 775 55.4
Hund26699 Selenicereus undatus HOM05D003652 ORTHO05D004190 1.5e-216 756.9 758 57.1
Sabra05G0146300 Salix brachista HOM05D003652 ORTHO05D004190 2.5e-216 756.1 902 50.3
SalBow6G6910 Salvia bowleyana HOM05D003652 ORTHO05D004190 4.2e-216 755.4 652 61.2
HanXRQChr11g0339321 Helianthus annuus HOM05D003652 ORTHO05D004190 1.2e-215 753.8 762 57.2
Manes.02G178800 Manihot esculenta HOM05D003652 ORTHO05D004190 3.6e-215 752.3 624 63.5
TPR.G8817 Trifolium pratense HOM05D003652 ORTHO05D004190 3.6e-215 752.3 772 55.8
EL10Ac1g01536 Beta vulgaris HOM05D003652 ORTHO05D004190 1.0e-214 750.7 769 55.1
vmacro18508 Vaccinium macrocarpon HOM05D003652 ORTHO05D004190 4.0e-214 748.8 853 56.2
PSO238G0028 Papaver somniferum HOM05D003652 ORTHO05D004190 5.2e-214 748.4 768 55.6
Psat6g186720 Pisum sativum HOM05D003652 ORTHO05D004190 5.2e-214 748.4 770 55.6
Glyma.20G174900 Glycine max HOM05D003652 ORTHO05D004190 6.8e-214 748.0 774 55.0
PSO210G4735 Papaver somniferum HOM05D003652 ORTHO05D004190 6.8e-214 748.0 768 55.6
THA.LOC104812038 Tarenaya hassleriana HOM05D003652 ORTHO05D004190 2.6e-213 746.1 782 57.9
SGA_v2.0_scaffold19G08667 Striga asiatica HOM05D003652 ORTHO05D004190 7.5e-213 744.6 780 54.4
Glyma.10G217200 Glycine max HOM05D003652 ORTHO05D004190 9.8e-213 744.2 770 55.3
AUR62013575 Chenopodium quinoa HOM05D003652 ORTHO05D004190 1.3e-212 743.8 759 54.8
Cc10_g14750 Coffea canephora HOM05D003652 ORTHO05D004190 3.7e-212 742.3 792 55.3
Lj5g0007913 Lotus japonicus HOM05D003652 ORTHO05D004190 6.3e-212 741.5 778 54.9
ECA236G0544 Erigeron canadensis HOM05D003652 ORTHO05D004190 1.4e-211 740.3 655 60.6
Lalb_Chr21g0305741 Lupinus albus HOM05D003652 ORTHO05D004190 9.1e-211 737.6 771 55.0
VMungo0720G3010 Vigna mungo HOM05D003652 ORTHO05D004190 1.6e-210 736.9 759 55.3
Sp5g31980 Schrenkiella parvula HOM05D003652 ORTHO05D004190 2.0e-210 736.5 771 56.9
AUR62026715 Chenopodium quinoa HOM05D003652 ORTHO05D004190 4.5e-210 735.3 769 53.7
C02p34110 Brassica napus HOM05D003652 ORTHO05D004190 7.7e-210 734.6 758 56.2
Ah.05g167890 Amaranthus hybridus HOM05D003652 ORTHO05D004190 1.7e-209 733.4 768 54.8
AL1G34230 Arabidopsis lyrata HOM05D003652 ORTHO05D004190 1.7e-209 733.4 771 57.8
BcaC03g15706 Brassica carinata HOM05D003652 ORTHO05D004190 1.7e-209 733.4 757 55.9
arahy.Tifrunner.gnm1.ann1.2W1LLW Arachis hypogaea HOM05D003652 ORTHO05D004190 2.9e-209 732.6 764 58.0
AT1G76850 Arabidopsis thaliana HOM05D003652 ORTHO05D004190 5.0e-209 731.9 655 59.4
Aa31LG7G5310 Aethionema arabicum HOM05D003652 ORTHO05D004190 6.6e-209 731.5 773 56.3
Carub.0001s2061 Capsella rubella HOM05D003652 ORTHO05D004190 8.6e-209 731.1 773 57.1
Carub.0002s2373 Capsella rubella HOM05D003652 ORTHO05D004190 1.9e-208 729.9 773 57.6
AL2G36970 Arabidopsis lyrata HOM05D003652 ORTHO05D004190 3.3e-208 729.2 654 59.3
arahy.Tifrunner.gnm1.ann1.8KD3C5 Arachis hypogaea HOM05D003652 ORTHO05D004190 3.3e-208 729.2 764 57.9
CARHR070360 Cardamine hirsuta HOM05D003652 ORTHO05D004190 3.3e-208 729.2 774 55.8
Thhalv10018046m.g Eutrema salsugineum HOM05D003652 ORTHO05D004190 4.7e-207 725.3 763 54.0
AT1G21170 Arabidopsis thaliana HOM05D003652 ORTHO05D004190 4.0e-206 722.2 772 57.1
Aa31LG4G6890 Aethionema arabicum HOM05D003652 ORTHO05D004190 5.2e-206 721.8 776 53.1
BcaB02g07077 Brassica carinata HOM05D003652 ORTHO05D004190 1.5e-205 720.3 768 55.7
CDE06G1552 Ceratophyllum demersum HOM05D003652 ORTHO05D004190 3.4e-205 719.2 787 53.4
ATR0772G136 Amborella trichopoda HOM05D003652 ORTHO05D004190 5.7e-205 718.4 785 52.7
BcaC08g45509 Brassica carinata HOM05D003652 ORTHO05D004190 9.8e-205 717.6 768 55.6
A07p28340 Brassica napus HOM05D003652 ORTHO05D004190 2.9e-204 716.1 767 55.7
BraA07t30471Z Brassica rapa HOM05D003652 ORTHO05D004190 2.9e-204 716.1 767 55.7
C06p31780 Brassica napus HOM05D003652 ORTHO05D004190 4.9e-204 715.3 769 55.7
BolC6t38307H Brassica oleracea HOM05D003652 ORTHO05D004190 2.4e-203 713.0 769 55.5
Sp1g18810 Schrenkiella parvula HOM05D003652 ORTHO05D004190 2.4e-203 713.0 785 52.7
Nitab4.5_0008106g0020 Nicotiana tabacum HOM05D003652 ORTHO05D004190 1.6e-199 700.3 648 63.4
SHI18207 Sapria himalayana HOM05D003652 ORTHO05D004190 5.2e-198 695.3 767 51.0
Phvul.007G088900 Phaseolus vulgaris HOM05D003652 ORTHO05D004190 6.8e-198 694.9 635 59.2
CARHR021630 Cardamine hirsuta HOM05D003652 ORTHO05D004190 1.2e-197 694.1 623 59.2
DCAR_014431 Daucus carota HOM05D003652 ORTHO05D004190 4.1e-195 685.6 797 51.1
Os04g0421900 Oryza sativa ssp. japonica HOM05D003652 ORTHO05D004190 5.0e-193 678.7 660 56.4
HPP92_016941 Vanilla planifolia HOM05D003652 ORTHO05D004190 2.1e-191 673.3 770 51.2
ECA247G2571 Erigeron canadensis HOM05D003652 ORTHO05D004190 7.5e-189 664.8 642 55.9
ClCG09G010020 Citrullus lanatus HOM05D003652 ORTHO05D004190 4.9e-188 662.1 938 45.8
HanXRQChr06g0174441 Helianthus annuus HOM05D003652 ORTHO05D004190 5.1e-185 652.1 647 54.9
HanXRQChr02g0045411 Helianthus annuus HOM05D003652 ORTHO05D004190 1.9e-184 650.2 646 54.6
Thhalv10006745m.g Eutrema salsugineum HOM05D003652 ORTHO05D004190 1.1e-174 617.8 569 58.2
MD02G1241200 Malus domestica HOM05D003652 ORTHO05D004190 2.5e-168 596.7 495 64.0
unitig_744.g24568 Utricularia gibba HOM05D003652 ORTHO05D004190 7.6e-165 585.1 761 48.0
CDE08G0217 Ceratophyllum demersum HOM05D003652 ORTHO05D004190 3.5e-162 576.2 652 51.4
AagrBONN_evm.TU.Sc2ySwM_344.5035 Anthoceros agrestis HOM05D003652 ORTHO05D004190 7.4e-152 542.0 686 44.6
MBI09_g45353_MAGBIO Magnolia biondii HOM05D003652 ORTHO05D004190 3.4e-149 533.1 537 54.4
Mapoly0098s0037 Marchantia polymorpha HOM05D003652 ORTHO05D004190 1.1e-147 528.1 682 44.6
Hma1.2p1_0105F.1_g050770 Hydrangea macrophylla HOM05D003652 ORTHO05D004190 4.2e-147 526.2 433 64.7
A02p20920 Brassica napus HOM05D003652 ORTHO05D004190 4.6e-146 522.7 512 56.2
FAN10G0990 Fragaria x ananassa HOM05D003652 ORTHO05D004190 7.4e-144 515.4 441 62.1
Zm00001eb083200 Zea mays HOM05D003652 ORTHO05D004190 5.3e-142 509.2 587 49.4
Pp3c5_4060 Physcomitrium patens HOM05D003652 ORTHO05D004190 2.5e-136 490.3 852 38.7
BolC2t09427H Brassica oleracea HOM05D003652 ORTHO05D004190 6.5e-132 475.7 463 54.9
Pp3c1_7430 Physcomitrium patens HOM05D003652 ORTHO05D004190 2.7e-130 470.3 710 39.6
Pp3c11_13110 Physcomitrium patens HOM05D003652 ORTHO05D004190 1.1e-126 458.4 714 40.1
Oeu014495.2 Olea europaea HOM05D003652 ORTHO05D004190 1.3e-124 451.4 699 43.3
SMO118G0055 Selaginella moellendorffii HOM05D003652 ORTHO05D004190 2.6e-120 437.2 653 40.4
COL.COLO4_37836 Corchorus olitorius HOM05D003652 ORTHO05D004190 5.0e-108 396.4 380 58.7
Pp3c24_1100 Physcomitrium patens HOM05D003652 ORTHO05D004190 6.1e-106 389.4 565 39.6
Zm00001eb422350 Zea mays HOM05D003652 ORTHO05D004190 1.7e-92 344.7 381 49.6
SEGI_34715 Sequoiadendron giganteum HOM05D003652 ORTHO05D004190 3.9e-84 317.0 310 51.3
BcaB02g07120 Brassica carinata HOM05D003652 ORTHO05D004190 1.6e-82 311.6 270 62.6
MBI02_g15889_MAGBIO Magnolia biondii HOM05D003652 ORTHO05D004190 1.3e-79 302.0 194 77.3
PGSC0003DMG400010789 Solanum tuberosum HOM05D003652 ORTHO05D004190 9.2e-78 295.8 205 79.5
MBI09_g18626_MAGBIO Magnolia biondii HOM05D003652 ORTHO05D004190 1.0e-76 292.4 383 46.7
MBI17_g42470_MAGBIO Magnolia biondii HOM05D003652 ORTHO05D004190 3.1e-73 280.8 257 56.8
SEGI_16189 Sequoiadendron giganteum HOM05D003652 ORTHO05D004190 3.5e-61 240.7 161 73.9
MBI17_g21001_MAGBIO Magnolia biondii HOM05D003652 ORTHO05D004190 5.6e-59 233.4 187 63.6
Zm00001eb342060 Zea mays HOM05D003652 ORTHO05D004190 5.6e-59 233.4 172 68.6
Medtr3g008090 Medicago truncatula HOM05D003652 ORTHO05D004190 7.3e-59 233.0 167 71.3
MD02G1241400 Malus domestica HOM05D003652 ORTHO05D004190 9.6e-59 232.6 159 71.7
Aa31LG7G5260 Aethionema arabicum HOM05D003652 ORTHO05D004190 3.0e-52 211.1 237 52.7
SEGI_20180 Sequoiadendron giganteum HOM05D003652 ORTHO05D004190 3.9e-52 210.7 228 48.2
CBR_g18955 Chara braunii HOM05D000019 ORTHO05D000048 5.3e-49 200.3 294 40.8
COL.COLO4_33551 Corchorus olitorius HOM05D003652 ORTHO05D004190 1.6e-45 188.7 247 47.0
A02p20930 Brassica napus HOM05D003652 ORTHO05D004190 1.3e-39 169.1 155 58.1
Nitab4.5_0008106g0010 Nicotiana tabacum HOM05D003652 ORTHO05D004190 1.9e-38 165.2 95 87.4
MBI09_g20113_MAGBIO Magnolia biondii HOM05D003652 ORTHO05D004190 4.3e-35 154.1 224 42.9
Zm00001eb269890 Zea mays HOM05D003652 ORTHO05D004190 1.2e-32 146.0 103 67.0
Actinidia01153 Actinidia chinensis HOM05D003652 ORTHO05D004190 2.2e-31 141.7 94 74.5
Zm00001eb125110 Zea mays HOM05D003652 ORTHO05D004190 7.1e-30 136.7 118 60.2
Zm00001eb184190 Zea mays HOM05D003652 ORTHO05D004190 9.3e-30 136.3 172 46.5
Zm00001eb179990 Zea mays HOM05D003652 ORTHO05D004190 2.1e-29 135.2 88 72.7
Zm00001eb119180 Zea mays HOM05D003652 ORTHO05D004190 3.9e-28 131.0 102 64.7
Zm00001eb092050 Zea mays HOM05D003652 ORTHO05D004190 1.1e-25 122.9 95 66.3
Zm00001eb116630 Zea mays HOM05D003652 ORTHO05D004190 3.4e-24 117.9 78 71.8
Cre16.g684600 Chlamydomonas reinhardtii HOM05D003652 ORTHO05D004190 3.6e-21 107.8 206 31.1
VMungo0647G1536 Vigna mungo HOM05D003652 ORTHO05D004190 7.7e-16 90.1 74 59.5
SEGI_05372 Sequoiadendron giganteum HOM05D003652 ORTHO05D004190 3.6e-13 81.3 97 42.3
Zm00001eb201500 Zea mays HOM05D003652 ORTHO05D004190 1.8e-12 79.0 80 50.0
Zm00001eb002970 Zea mays HOM05D000488 ORTHO05D004190 2.4e-09 68.6 76 47.4
arahy.Tifrunner.gnm1.ann1.0G6L2R Arachis hypogaea HOM05D003580 ORTHO05D004441 3.4e-08 64.7 47 66.0
RcHm_v2.0_Chr7g0230911 Rosa chinensis HOM05D004640 ORTHO05D005489 6.5e-07 60.5 35 82.9
Lsat_1_v5_gn_8_41041 Lactuca sativa HOM05D003579 ORTHO05D005739 2.5e-06 58.5 42 76.2
RcHm_v2.0_Chr7g0219231 Rosa chinensis HOM05D003652 ORTHO05D005489 2.5e-06 58.5 35 80.0
Lalb_Chr06g0162011 Lupinus albus HOM05D003652 ORTHO05D004190 3.2e-06 58.2 97 40.2


User provided reference genes

Program Settings