Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen12g028550 Solanum pennellii HOM05D005827 ORTHO05D005864 1.9e-78 295.8 158 100.0
Solyc12g056030.2 Solanum lycopersicum HOM05D005827 ORTHO05D005864 2.8e-77 292.0 158 98.7
PGSC0003DMG400005012 Solanum tuberosum HOM05D005827 ORTHO05D005864 5.3e-76 287.7 158 96.8
Nitab4.5_0000209g0220 Nicotiana tabacum HOM05D005827 ORTHO05D005864 1.4e-68 263.1 158 88.6
Nitab4.5_0011210g0030 Nicotiana tabacum HOM05D000771 ORTHO05D005864 1.9e-65 252.7 157 84.1
CAN.G517.16 Capsicum annuum HOM05D005827 ORTHO05D005864 2.6e-62 242.3 151 87.4
Peaxi162Scf00880g00322 Petunia axillaris HOM05D005827 ORTHO05D005864 2.4e-60 235.7 158 79.7
Nitab4.5_0001647g0080 Nicotiana tabacum HOM05D005827 ORTHO05D005864 1.0e-58 230.3 146 83.6
Dinv15756 Davidia involucrata HOM05D005827 ORTHO05D005864 5.3e-52 208.0 158 70.3
Hma1.2p1_0796F.1_g219120 Hydrangea macrophylla HOM05D005827 ORTHO05D005864 2.7e-48 195.7 159 66.0
CSS0006486 Camellia sinensis var. sinensis HOM05D005827 ORTHO05D005864 8.0e-48 194.1 161 68.9
Duzib132G0170 Durio zibethinus HOM05D005827 ORTHO05D005864 3.0e-47 192.2 160 66.2
Rhsim11G0160600 Rhododendron simsii HOM05D005827 ORTHO05D005864 8.8e-47 190.7 157 66.2
Potri.009G097000 Populus trichocarpa HOM05D005827 ORTHO05D005864 2.0e-46 189.5 160 66.9
vmacro14445 Vaccinium macrocarpon HOM05D005827 ORTHO05D005864 1.4e-44 183.3 157 63.7
Manes.10G074300 Manihot esculenta HOM05D005827 ORTHO05D005864 2.4e-44 182.6 161 64.6
Thecc.02G106700 Theobroma cacao HOM05D005827 ORTHO05D005864 1.2e-43 180.3 142 65.5
Eucgr.G01363 Eucalyptus grandis HOM05D005827 ORTHO05D005864 5.9e-43 177.9 158 60.1
Prupe.1G568500 Prunus persica HOM05D005827 ORTHO05D005864 7.7e-43 177.6 159 61.0
Cc02_g19170 Coffea canephora HOM05D005827 ORTHO05D005864 1.0e-42 177.2 160 64.4
CiPaw.06G170100 Carya illinoinensis HOM05D005827 ORTHO05D005864 1.3e-42 176.8 159 62.3
Atru.chr5.2579 Acer truncatum HOM05D005827 ORTHO05D005864 1.2e-40 170.2 161 60.2
Lj9A321T79 Lonicera japonica HOM05D005827 ORTHO05D005864 2.7e-40 169.1 199 52.3
FAN04G0262 Fragaria x ananassa HOM05D005827 ORTHO05D005864 6.1e-40 167.9 148 60.8
MD15G1423200 Malus domestica HOM05D005827 ORTHO05D005864 6.1e-40 167.9 159 57.9
MSTRG.27741 Avicennia marina HOM05D005827 ORTHO05D005864 8.0e-40 167.5 157 61.8
FAN08G1793 Fragaria x ananassa HOM05D005827 ORTHO05D005864 1.0e-39 167.2 129 65.1
Gohir.A03G186800 Gossypium hirsutum HOM05D005827 ORTHO05D005864 1.0e-39 167.2 159 59.1
Gorai.005G235500 Gossypium raimondii HOM05D005827 ORTHO05D005864 3.0e-39 165.6 159 59.1
CANSAT11G0172 Cannabis sativa HOM05D005827 ORTHO05D005864 4.0e-39 165.2 130 66.2
THA.LOC104823732 Tarenaya hassleriana HOM05D005827 ORTHO05D005864 4.0e-39 165.2 161 57.8
Sabra09G0074600 Salix brachista HOM05D005827 ORTHO05D005864 5.2e-39 164.9 159 59.7
FAN18G4374 Fragaria x ananassa HOM05D005827 ORTHO05D005864 8.8e-39 164.1 129 63.6
FAN13G0291 Fragaria x ananassa HOM05D005827 ORTHO05D005864 1.2e-38 163.7 129 63.6
Sabra09G0074500 Salix brachista HOM05D005827 ORTHO05D005864 1.2e-38 163.7 189 52.9
FvH4_5g29540 Fragaria vesca HOM05D005827 ORTHO05D005864 2.6e-38 162.5 129 64.3
RcHm_v2.0_Chr7g0222441 Rosa chinensis HOM05D005827 ORTHO05D005864 4.4e-38 161.8 130 65.4
HanXRQChr16g0514881 Helianthus annuus HOM05D005827 ORTHO05D005864 5.7e-38 161.4 159 58.5
QL11p034047 Quercus lobata HOM05D005827 ORTHO05D005864 5.7e-38 161.4 158 60.1
Cpa.g.sc246.10 Carica papaya HOM05D005827 ORTHO05D005864 1.7e-37 159.8 160 56.9
Haze_10160 Corylus avellana HOM05D005827 ORTHO05D005864 2.8e-37 159.1 128 65.6
DCAR_029081 Daucus carota HOM05D005827 ORTHO05D005864 2.8e-37 159.1 160 58.1
TAR625G0497 Trochodendron aralioides HOM05D005827 ORTHO05D005864 2.8e-37 159.1 161 56.5
TAR625G1254 Trochodendron aralioides HOM05D005827 ORTHO05D005864 2.8e-37 159.1 161 56.5
Gohir.D02G207600 Gossypium hirsutum HOM05D005827 ORTHO05D005864 3.7e-37 158.7 159 58.5
Nn1g04717 Nelumbo nucifera HOM05D005827 ORTHO05D005864 4.9e-37 158.3 157 58.0
ECA234G2840 Erigeron canadensis HOM05D005827 ORTHO05D005864 6.3e-37 157.9 130 63.8
QL11p033993 Quercus lobata HOM05D005827 ORTHO05D005864 6.3e-37 157.9 152 59.9
A02p32240 Brassica napus HOM05D005827 ORTHO05D005864 1.1e-36 157.1 155 56.8
BraA02t08240Z Brassica rapa HOM05D005827 ORTHO05D005864 1.1e-36 157.1 155 56.8
BcaC03g17064 Brassica carinata HOM05D005827 ORTHO05D005864 1.4e-36 156.8 155 56.8
BolC2t11063H Brassica oleracea HOM05D005827 ORTHO05D005864 4.1e-36 155.2 155 56.1
C02p49840 Brassica napus HOM05D005827 ORTHO05D005864 5.4e-36 154.8 155 56.1
Migut.N01172 Erythranthe guttata HOM05D005827 ORTHO05D005864 5.4e-36 154.8 158 55.7
BcaB07g30381 Brassica carinata HOM05D005827 ORTHO05D005864 1.2e-35 153.7 155 55.5
COL.COLO4_32605 Corchorus olitorius HOM05D005827 ORTHO05D005864 1.2e-35 153.7 164 54.9
Sp2g13090 Schrenkiella parvula HOM05D005827 ORTHO05D005864 1.2e-35 153.7 153 54.9
GSVIVG01003168001 Vitis vinifera HOM05D005827 ORTHO05D005864 1.6e-35 153.3 159 57.9
Lsat_1_v5_gn_5_114720 Lactuca sativa HOM05D005827 ORTHO05D005864 3.5e-35 152.1 140 60.0
AUR62010278 Chenopodium quinoa HOM05D005827 ORTHO05D005864 1.0e-34 150.6 159 53.5
SalBow3G3341 Salvia bowleyana HOM05D005827 ORTHO05D005864 1.7e-34 149.8 167 51.5
PSO170G4182 Papaver somniferum HOM05D005827 ORTHO05D005864 2.3e-34 149.4 157 54.8
SGA_v2.0_scaffold42G16001 Striga asiatica HOM05D005827 ORTHO05D005864 3.8e-34 148.7 160 55.6
Lalb_Chr21g0308391 Lupinus albus HOM05D005827 ORTHO05D005864 1.5e-33 146.7 162 51.9
SGA_v2.0_scaffold393G50707 Striga asiatica HOM05D005827 ORTHO05D005864 1.9e-33 146.4 154 56.5
PGR042G1992 Punica granatum HOM05D005827 ORTHO05D005864 3.3e-33 145.6 132 58.3
MD08G1229200 Malus domestica HOM05D005827 ORTHO05D005864 5.6e-33 144.8 132 59.8
Carub.0005s0059 Capsella rubella HOM05D005827 ORTHO05D005864 1.6e-32 143.3 154 51.9
PSO210G1068 Papaver somniferum HOM05D005827 ORTHO05D005864 2.1e-32 142.9 157 54.1
Sc08g0001470 Simmondsia chinensis HOM05D005827 ORTHO05D005864 2.1e-32 142.9 162 51.9
EL10Ac9g22299 Beta vulgaris HOM05D005827 ORTHO05D005864 1.8e-31 139.8 160 50.6
Thhalv10005665m.g Eutrema salsugineum HOM05D005827 ORTHO05D005864 1.8e-31 139.8 176 48.9
Glyma.12G113700 Glycine max HOM05D005827 ORTHO05D005864 5.2e-31 138.3 151 54.3
CDE01G0172 Ceratophyllum demersum HOM05D005827 ORTHO05D005864 8.9e-31 137.5 164 54.3
Ca_30413_v3 Cicer arietinum L. HOM05D005827 ORTHO05D005864 8.9e-31 137.5 164 53.0
Sed0003004 Sechium edule HOM05D005827 ORTHO05D005864 8.9e-31 137.5 161 52.2
ClCG04G002790 Citrullus lanatus HOM05D005827 ORTHO05D005864 2.0e-30 136.3 152 52.0
Eucgr.H03226 Eucalyptus grandis HOM05D005827 ORTHO05D005864 2.0e-30 136.3 129 56.6
Phvul.007G038800 Phaseolus vulgaris HOM05D005827 ORTHO05D005864 2.0e-30 136.3 162 52.5
AT2G01640 Arabidopsis thaliana HOM05D005827 ORTHO05D005864 4.4e-30 135.2 132 55.3
Aqoxy5G03364 Aquilegia oxysepala HOM05D005827 ORTHO05D005864 2.2e-29 132.9 156 50.6
AL5G10740 Arabidopsis lyrata HOM05D005827 ORTHO05D005864 2.2e-29 132.9 127 55.9
CsaV3_4G029930 Cucumis sativus L. HOM05D005827 ORTHO05D005864 2.9e-29 132.5 159 47.8
Actinidia00415 Actinidia chinensis HOM05D005827 ORTHO05D005864 1.1e-28 130.6 125 63.2
Ciclev10030223m.g Citrus clementina HOM05D005827 ORTHO05D005864 1.8e-28 129.8 116 61.2
TAR381G1673 Trochodendron aralioides HOM05D005827 ORTHO05D005864 4.1e-28 128.6 134 56.7
unitig_94.g28296 Utricularia gibba HOM05D005827 ORTHO05D005864 1.2e-27 127.1 158 47.5
unitig_94.g28309 Utricularia gibba HOM05D005827 ORTHO05D005864 1.2e-27 127.1 158 47.5
HPP92_026144 Vanilla planifolia HOM05D005827 ORTHO05D005864 4.6e-27 125.2 157 45.2
arahy.Tifrunner.gnm1.ann1.M92LVR Arachis hypogaea HOM05D005827 ORTHO05D005864 7.8e-27 124.4 152 48.0
arahy.Tifrunner.gnm1.ann1.HL4A43 Arachis hypogaea HOM05D005827 ORTHO05D005864 5.0e-26 121.7 154 45.5
Aa31LG2G8260 Aethionema arabicum HOM05D005827 ORTHO05D005864 1.1e-25 120.6 131 51.1
TWI31G0230 Tripterygium wilfordii HOM05D005827 ORTHO05D005864 1.1e-25 120.6 156 50.0
Glyma.20G127400 Glycine max HOM05D005827 ORTHO05D005864 4.3e-25 118.6 151 49.7
Hund00127 Selenicereus undatus HOM05D005827 ORTHO05D005864 7.3e-25 117.9 134 54.5
Hund00128 Selenicereus undatus HOM05D005827 ORTHO05D005864 4.7e-24 115.2 135 53.3
Ca_06388_v3 Cicer arietinum L. HOM05D005827 ORTHO05D005864 1.0e-23 114.0 136 51.5
Os12g0244500 Oryza sativa ssp. japonica HOM05D005827 ORTHO05D005864 1.8e-23 113.2 131 51.9
MELO3C003274.2 Cucumis melo HOM05D005827 ORTHO05D005864 2.3e-23 112.8 133 50.4
Lj5g0000760 Lotus japonicus HOM05D005827 ORTHO05D005864 2.6e-22 109.4 107 56.1
Zm00001eb133530 Zea mays HOM05D005827 ORTHO05D005864 3.4e-22 109.0 144 45.1
Aa31sc215G30 Aethionema arabicum HOM05D005827 ORTHO05D005864 5.8e-22 108.2 118 52.5
Lj3g0023632 Lotus japonicus HOM05D005827 ORTHO05D005864 9.8e-22 107.5 107 56.1
MD05G1087800 Malus domestica HOM05D005827 ORTHO05D005864 8.3e-21 104.4 114 50.9
ATR0827G109 Amborella trichopoda HOM05D005827 ORTHO05D005864 9.2e-20 100.9 134 44.0
TPR.G13876 Trifolium pratense HOM05D005827 ORTHO05D005864 1.6e-19 100.1 112 53.6
Psat6g219720 Pisum sativum HOM05D005827 ORTHO05D005864 7.8e-19 97.8 172 41.9
Nn2g12688 Nelumbo nucifera HOM05D005827 ORTHO05D005864 1.0e-18 97.4 91 59.3
AUR62044681 Chenopodium quinoa HOM05D005827 ORTHO05D005864 5.6e-17 91.7 85 55.3
MELO3C033554.2 Cucumis melo HOM05D005827 ORTHO05D005864 9.5e-17 90.9 103 48.5
QL11p034007 Quercus lobata HOM05D005827 ORTHO05D005864 9.5e-17 90.9 100 54.0
AUR62039111 Chenopodium quinoa HOM05D005827 ORTHO05D005864 2.8e-16 89.4 74 60.8
CiPaw.07G088900 Carya illinoinensis HOM05D005827 ORTHO05D005864 2.3e-15 86.3 87 55.2
ATR0691G195 Amborella trichopoda HOM05D005827 ORTHO05D005864 2.6e-14 82.8 78 53.8
SMO364G0308 Selaginella moellendorffii HOM05D005827 ORTHO05D000003 3.4e-14 82.4 114 41.2
Medtr1g107495 Medicago truncatula HOM05D005827 ORTHO05D005864 4.4e-14 82.0 112 45.5
SMO364G0554 Selaginella moellendorffii HOM05D005827 ORTHO05D005864 1.9e-12 76.6 114 40.4
SEGI_38856 Sequoiadendron giganteum HOM05D005827 ORTHO05D005864 1.9e-12 76.6 164 37.2
Zm00001eb350190 Zea mays HOM05D005827 ORTHO05D005864 1.9e-12 76.6 119 47.1
Zm00001eb207600 Zea mays HOM05D005827 ORTHO05D005864 5.4e-12 75.1 88 55.7
Mapoly0052s0016 Marchantia polymorpha HOM05D005827 ORTHO05D005864 9.2e-12 74.3 155 40.6
Pp3c21_2370 Physcomitrium patens HOM05D005827 ORTHO05D005864 2.7e-11 72.8 133 36.1
Zm00001eb006370 Zea mays HOM05D005827 ORTHO05D005864 3.5e-11 72.4 88 54.5
CANSAT25G3357 Cannabis sativa HOM05D005827 ORTHO05D005864 1.0e-10 70.9 54 59.3
ClCG01G025500 Citrullus lanatus HOM05D005827 ORTHO05D005864 1.7e-10 70.1 107 43.9
Zm00001eb324360 Zea mays HOM05D005827 ORTHO05D005864 1.7e-10 70.1 101 48.5
Zm00001eb259520 Zea mays HOM05D005827 ORTHO05D005864 3.0e-10 69.3 101 48.5
Zm00001eb091410 Zea mays HOM05D005827 ORTHO05D005864 1.1e-09 67.4 127 41.7
Zm00001eb324920 Zea mays HOM05D005827 ORTHO05D005864 2.5e-09 66.2 100 48.0
AagrBONN_evm.TU.Sc2ySwM_228.4380 Anthoceros agrestis HOM05D005827 ORTHO05D005864 2.8e-08 62.8 93 45.2
Ah.01g018070 Amaranthus hybridus HOM05D007150 ORTHO05D008994 4.0e-07 58.9 68 50.0
Cre06.g248800 Chlamydomonas reinhardtii HOM05D045397 ORTHO05D005864 4.4e-06 55.5 146 33.6
HanXRQChr04g0106401 Helianthus annuus HOM05D003977 ORTHO05D004536 7.6e-06 54.7 70 47.1


User provided reference genes

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