Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen12g027920 Solanum pennellii HOM05D004432 ORTHO05D005427 1.2e-38 162.5 75 100.0
Solyc02g081620.3 Solanum lycopersicum HOM05D004432 ORTHO05D005427 4.7e-30 134.0 71 87.3
Sopen02g026240 Solanum pennellii HOM05D004432 ORTHO05D005427 4.7e-30 134.0 71 87.3
PGSC0003DMG401017733 Solanum tuberosum HOM05D004432 ORTHO05D005427 4.7e-30 134.0 71 87.3
Dinv05655 Davidia involucrata HOM05D004432 ORTHO05D005427 3.0e-29 131.3 71 84.5
Nitab4.5_0006794g0040 Nicotiana tabacum HOM05D004432 ORTHO05D005427 2.0e-28 128.6 70 84.3
Nitab4.5_0010401g0010 Nicotiana tabacum HOM05D004432 ORTHO05D005427 2.0e-28 128.6 70 84.3
Potri.003G074200 Populus trichocarpa HOM05D004432 ORTHO05D005427 2.0e-28 128.6 71 81.7
CSS0030674 Camellia sinensis var. sinensis HOM05D004432 ORTHO05D005427 2.6e-28 128.3 71 81.7
Dinv31191 Davidia involucrata HOM05D004432 ORTHO05D005427 2.6e-28 128.3 71 83.1
arahy.Tifrunner.gnm1.ann1.AGE02H Arachis hypogaea HOM05D004432 ORTHO05D005427 4.4e-28 127.5 71 81.7
arahy.Tifrunner.gnm1.ann1.GLQ3B3 Arachis hypogaea HOM05D004432 ORTHO05D005427 4.4e-28 127.5 71 81.7
Duzib132G0752 Durio zibethinus HOM05D004432 ORTHO05D005427 4.4e-28 127.5 71 81.7
Duzib248G0466 Durio zibethinus HOM05D004432 ORTHO05D005427 4.4e-28 127.5 71 81.7
Glyma.05G241800 Glycine max HOM05D004432 ORTHO05D005427 4.4e-28 127.5 71 81.7
Glyma.08G049300 Glycine max HOM05D004432 ORTHO05D005427 4.4e-28 127.5 71 81.7
Manes.03G075400 Manihot esculenta HOM05D004432 ORTHO05D005427 4.4e-28 127.5 71 81.7
Potri.001G160700 Populus trichocarpa HOM05D004432 ORTHO05D005427 4.4e-28 127.5 71 81.7
Sabra01G0131600 Salix brachista HOM05D004432 ORTHO05D005427 4.4e-28 127.5 71 81.7
Thecc.02G004200 Theobroma cacao HOM05D004432 ORTHO05D005427 4.4e-28 127.5 71 81.7
Cpa.g.sc30.114 Carica papaya HOM05D004432 ORTHO05D005427 5.7e-28 127.1 71 81.7
CiPaw.10G104800 Carya illinoinensis HOM05D004432 ORTHO05D005427 5.7e-28 127.1 71 80.3
Ciclev10015448m.g Citrus clementina HOM05D004432 ORTHO05D005427 5.7e-28 127.1 71 81.7
Haze_05262 Corylus avellana HOM05D004432 ORTHO05D005427 5.7e-28 127.1 71 80.3
Gohir.D12G047900 Gossypium hirsutum HOM05D004432 ORTHO05D005427 5.7e-28 127.1 71 81.7
Gorai.008G050900 Gossypium raimondii HOM05D004432 ORTHO05D005427 5.7e-28 127.1 71 81.7
Lalb_Chr09g0330711 Lupinus albus HOM05D004432 ORTHO05D005427 5.7e-28 127.1 71 81.7
Peaxi162Scf00048g01413 Petunia axillaris HOM05D004432 ORTHO05D005427 5.7e-28 127.1 71 78.9
Psat7g005440 Pisum sativum HOM05D004432 ORTHO05D005427 5.7e-28 127.1 71 81.7
QL11p012272 Quercus lobata HOM05D004432 ORTHO05D005427 5.7e-28 127.1 71 80.3
ATR0568G227 Amborella trichopoda HOM05D004432 ORTHO05D005427 7.4e-28 126.7 71 83.1
CiPaw.09G137500 Carya illinoinensis HOM05D004432 ORTHO05D005427 7.4e-28 126.7 72 79.2
MBI18_g00544_MAGBIO Magnolia biondii HOM05D004432 ORTHO05D005427 7.4e-28 126.7 71 83.1
Aqoxy1G01396 Aquilegia oxysepala HOM05D004432 ORTHO05D005427 9.7e-28 126.3 71 83.1
Lj4g0008002 Lotus japonicus HOM05D004432 ORTHO05D005427 9.7e-28 126.3 71 80.3
Ca_17239_v3 Cicer arietinum L. HOM05D004432 ORTHO05D005427 1.3e-27 125.9 71 80.3
ClCG01G025530 Citrullus lanatus HOM05D004432 ORTHO05D005427 1.3e-27 125.9 71 80.3
MELO3C007033.2 Cucumis melo HOM05D004432 ORTHO05D005427 1.3e-27 125.9 71 80.3
CsaV3_6G052770 Cucumis sativus L. HOM05D004432 ORTHO05D005427 1.3e-27 125.9 71 80.3
Hma1.2p1_0088F.1_g045180 Hydrangea macrophylla HOM05D004432 ORTHO05D005427 1.3e-27 125.9 71 80.3
Lalb_Chr05g0222011 Lupinus albus HOM05D004432 ORTHO05D005427 1.3e-27 125.9 71 80.3
Sabra03G0044900 Salix brachista HOM05D004432 ORTHO05D005427 1.3e-27 125.9 71 80.3
Sed0004537 Sechium edule HOM05D004432 ORTHO05D005427 1.3e-27 125.9 71 80.3
TPR.G12851 Trifolium pratense HOM05D004432 ORTHO05D005427 1.3e-27 125.9 71 80.3
GSVIVG01012145001 Vitis vinifera HOM05D004432 ORTHO05D005427 1.3e-27 125.9 71 81.7
CSS0046356 Camellia sinensis var. sinensis HOM05D004432 ORTHO05D005427 1.7e-27 125.6 71 77.5
Lj1A1149G74 Lonicera japonica HOM05D004432 ORTHO05D005427 1.7e-27 125.6 72 83.3
Nn7g38330 Nelumbo nucifera HOM05D004432 ORTHO05D005427 1.7e-27 125.6 71 83.1
Atru.chr10.352 Acer truncatum HOM05D004432 ORTHO05D005427 2.2e-27 125.2 71 80.3
Atru.chr8.662 Acer truncatum HOM05D004432 ORTHO05D005427 2.2e-27 125.2 71 80.3
CAN.G809.71 Capsicum annuum HOM05D004432 ORTHO05D005427 2.2e-27 125.2 71 84.5
HanXRQChr09g0257831 Helianthus annuus HOM05D004432 ORTHO05D005427 2.2e-27 125.2 70 82.9
Lsat_1_v5_gn_8_106840 Lactuca sativa HOM05D004432 ORTHO05D005427 2.2e-27 125.2 70 82.9
Phvul.002G325100 Phaseolus vulgaris HOM05D004432 ORTHO05D005427 2.2e-27 125.2 71 80.3
THA.LOC104798567 Tarenaya hassleriana HOM05D004432 ORTHO05D005427 2.2e-27 125.2 71 80.3
VMungo0251G3730 Vigna mungo HOM05D004432 ORTHO05D005427 2.2e-27 125.2 71 80.3
MSTRG.16369 Avicennia marina HOM05D004432 ORTHO05D005427 2.8e-27 124.8 73 80.8
MD05G1247000 Malus domestica HOM05D004432 ORTHO05D005427 2.8e-27 124.8 70 81.4
MD10G1227600 Malus domestica HOM05D004432 ORTHO05D005427 2.8e-27 124.8 70 81.4
Medtr8g106220 Medicago truncatula HOM05D004432 ORTHO05D005427 2.8e-27 124.8 71 78.9
PGR042G3514 Punica granatum HOM05D004432 ORTHO05D005427 2.8e-27 124.8 71 78.9
TWI34G0639 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 2.8e-27 124.8 71 78.9
Actinidia22430 Actinidia chinensis HOM05D004432 ORTHO05D005427 3.7e-27 124.4 71 77.5
Eucgr.E04313 Eucalyptus grandis HOM05D004432 ORTHO05D005427 3.7e-27 124.4 71 78.9
FvH4_3g12940 Fragaria vesca HOM05D004432 ORTHO05D005427 3.7e-27 124.4 70 81.4
FAN11G2748 Fragaria x ananassa HOM05D004432 ORTHO05D005427 3.7e-27 124.4 70 81.4
FAN16G2829 Fragaria x ananassa HOM05D004432 ORTHO05D005427 3.7e-27 124.4 70 81.4
FAN21G3105 Fragaria x ananassa HOM05D004432 ORTHO05D005427 3.7e-27 124.4 70 81.4
FAN25G3492 Fragaria x ananassa HOM05D004432 ORTHO05D005427 3.7e-27 124.4 70 81.4
Gohir.A12G049500 Gossypium hirsutum HOM05D004432 ORTHO05D005427 3.7e-27 124.4 70 81.4
RcHm_v2.0_Chr5g0021051 Rosa chinensis HOM05D004432 ORTHO05D005427 3.7e-27 124.4 70 81.4
TWI15G0381 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 4.8e-27 124.0 71 78.9
Prupe.4G117400 Prunus persica HOM05D004432 ORTHO05D005427 6.3e-27 123.6 70 80.0
TWI63G0296 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 6.3e-27 123.6 71 77.5
Oeu056059.4 Olea europaea HOM05D004432 ORTHO05D005427 8.2e-27 123.2 72 80.6
TAR629G1033 Trochodendron aralioides HOM05D004432 ORTHO05D005427 8.2e-27 123.2 71 83.1
Aa31LG6G12370 Aethionema arabicum HOM05D004432 ORTHO05D005427 1.1e-26 122.9 71 78.9
SEGI_03989 Sequoiadendron giganteum HOM05D004432 ORTHO05D005427 1.1e-26 122.9 71 80.3
CANSAT35G1493 Cannabis sativa HOM05D004432 ORTHO05D005427 1.4e-26 122.5 70 80.0
TAR624G0396 Trochodendron aralioides HOM05D004432 ORTHO05D005427 1.4e-26 122.5 71 80.3
Migut.M02008 Erythranthe guttata HOM05D004432 ORTHO05D005427 1.8e-26 122.1 72 79.2
Lalb_Chr10g0095541 Lupinus albus HOM05D004432 ORTHO05D005427 1.8e-26 122.1 71 77.5
Oeu018409.2 Olea europaea HOM05D004432 ORTHO05D005427 1.8e-26 122.1 72 79.2
PSO541G2602 Papaver somniferum HOM05D004432 ORTHO05D005427 1.8e-26 122.1 71 78.9
PSO675G3183 Papaver somniferum HOM05D004432 ORTHO05D005427 1.8e-26 122.1 71 78.9
SalBow8G1652 Salvia bowleyana HOM05D004432 ORTHO05D005427 1.8e-26 122.1 72 79.2
Actinidia33704 Actinidia chinensis HOM05D004432 ORTHO05D005427 2.4e-26 121.7 70 77.1
Cc09_g05240 Coffea canephora HOM05D004432 ORTHO05D005427 2.4e-26 121.7 72 79.2
AL1G45380 Arabidopsis lyrata HOM05D004432 ORTHO05D005427 3.1e-26 121.3 70 78.6
AT1G30970 Arabidopsis thaliana HOM05D004432 ORTHO05D005427 3.1e-26 121.3 70 78.6
Carub.0001s2938 Capsella rubella HOM05D004432 ORTHO05D005427 3.1e-26 121.3 70 78.6
Thhalv10008022m.g Eutrema salsugineum HOM05D004432 ORTHO05D005427 3.1e-26 121.3 70 78.6
Sp1g26830 Schrenkiella parvula HOM05D004432 ORTHO05D005427 3.1e-26 121.3 70 78.6
SGA_v2.0_scaffold298G47706 Striga asiatica HOM05D004432 ORTHO05D005427 4.1e-26 120.9 72 77.8
SGA_v2.0_scaffold175G39329 Striga asiatica HOM05D004432 ORTHO05D005427 5.3e-26 120.6 73 76.7
BcaB07g32757 Brassica carinata HOM05D004432 ORTHO05D005427 7.0e-26 120.2 70 77.1
BcaC05g27130 Brassica carinata HOM05D004432 ORTHO05D005427 7.0e-26 120.2 70 77.1
A09p35240 Brassica napus HOM05D004432 ORTHO05D005427 7.0e-26 120.2 70 77.1
C05p30150 Brassica napus HOM05D004432 ORTHO05D005427 7.0e-26 120.2 70 77.1
BolC5t31752H Brassica oleracea HOM05D004432 ORTHO05D005427 7.0e-26 120.2 70 77.1
BraA09t39051Z Brassica rapa HOM05D004432 ORTHO05D005427 7.0e-26 120.2 70 77.1
Rhsim13G0133700 Rhododendron simsii HOM05D004432 ORTHO05D005427 7.0e-26 120.2 72 77.8
RhsimUnG0176700 Rhododendron simsii HOM05D004432 ORTHO05D005427 7.0e-26 120.2 72 77.8
HPP92_024334 Vanilla planifolia HOM05D004432 ORTHO05D005427 7.0e-26 120.2 70 80.0
DCAR_003760 Daucus carota HOM05D004432 ORTHO05D005427 9.1e-26 119.8 73 76.7
Hund04373 Selenicereus undatus HOM05D004432 ORTHO05D005427 9.1e-26 119.8 71 77.5
unitig_748.g7489 Utricularia gibba HOM05D004432 ORTHO05D005427 9.1e-26 119.8 72 77.8
Os09g0560900 Oryza sativa ssp. japonica HOM05D004432 ORTHO05D005427 1.2e-25 119.4 71 80.3
AUR62003535 Chenopodium quinoa HOM05D004432 ORTHO05D005427 1.5e-25 119.0 71 76.1
AUR62017849 Chenopodium quinoa HOM05D004432 ORTHO05D005427 1.5e-25 119.0 71 76.1
SMO239G0124 Selaginella moellendorffii HOM05D004432 ORTHO05D005427 1.5e-25 119.0 71 73.2
Sc16g0004480 Simmondsia chinensis HOM05D004432 ORTHO05D005427 1.5e-25 119.0 70 78.6
Solyc02g032120.3 Solanum lycopersicum HOM05D004432 ORTHO05D005427 2.0e-25 118.6 70 77.1
Sopen02g010370 Solanum pennellii HOM05D004432 ORTHO05D005427 2.0e-25 118.6 70 77.1
EL10Ac6g15345 Beta vulgaris HOM05D004432 ORTHO05D005427 2.6e-25 118.2 71 76.1
BcaC07g37789 Brassica carinata HOM05D004432 ORTHO05D005427 2.6e-25 118.2 70 75.7
BolC8t48181H Brassica oleracea HOM05D004432 ORTHO05D005427 2.6e-25 118.2 70 75.7
Mapoly0070s0095 Marchantia polymorpha HOM05D004432 ORTHO05D005427 2.6e-25 118.2 71 71.8
HPP92_006155 Vanilla planifolia HOM05D004432 ORTHO05D005427 2.6e-25 118.2 70 78.6
A08p10850 Brassica napus HOM05D004432 ORTHO05D005427 3.5e-25 117.9 70 75.7
BraA08t33081Z Brassica rapa HOM05D004432 ORTHO05D005427 3.5e-25 117.9 70 75.7
Dinv23014 Davidia involucrata HOM05D004432 ORTHO05D005427 4.5e-25 117.5 71 78.9
ECA232G3357 Erigeron canadensis HOM05D004432 ORTHO05D005427 4.5e-25 117.5 71 76.1
AagrBONN_evm.TU.Sc2ySwM_344.4234 Anthoceros agrestis HOM05D004432 ORTHO05D005427 5.9e-25 117.1 71 70.4
BcaB04g18194 Brassica carinata HOM05D004432 ORTHO05D005427 5.9e-25 117.1 70 74.3
Pp3c22_1400 Physcomitrium patens HOM05D004432 ORTHO05D005427 1.0e-24 116.3 71 71.8
SEGI_00495 Sequoiadendron giganteum HOM05D004432 ORTHO05D005427 1.0e-24 116.3 71 74.6
COL.COLO4_18029 Corchorus olitorius HOM05D004432 ORTHO05D003521 1.3e-24 115.9 64 79.7
CBR_g1074 Chara braunii HOM05D004432 ORTHO05D005427 1.7e-24 115.5 71 71.8
GSVIVG01015880001 Vitis vinifera HOM05D004432 ORTHO05D005427 1.1e-23 112.8 71 76.1
Peaxi162Scf00198g01525 Petunia axillaris HOM05D004432 ORTHO05D005427 1.4e-23 112.5 73 75.3
Ah.03g147620 Amaranthus hybridus HOM05D004432 ORTHO05D005427 3.6e-22 107.8 71 73.2
TWI15G1036 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 9.7e-20 99.8 62 75.8
GSVIVG01015874001 Vitis vinifera HOM05D004432 ORTHO05D005427 8.2e-19 96.7 65 70.8
SHI20754 Sapria himalayana HOM05D000030 ORTHO05D000009 3.6e-14 81.3 64 64.1
MCO08G042 Micromonas commoda HOM05D004432 ORTHO05D005427 1.0e-13 79.7 68 58.8
Cre06.g305200 Chlamydomonas reinhardtii HOM05D004432 ORTHO05D005427 5.2e-13 77.4 71 52.1
Cfa025961 Carpinus fangiana HOM05D004432 ORTHO05D005427 6.8e-13 77.0 60 50.0
vmacro03556 Vaccinium macrocarpon HOM05D004432 ORTHO05D005427 2.9e-08 61.6 40 72.5
Aqoxy1G01395 Aquilegia oxysepala HOM05D004432 ORTHO05D005427 4.7e-06 54.3 50 50.0


User provided reference genes

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