Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen12g024230 Solanum pennellii HOM05D004074 ORTHO05D004717 7.8e-35 149.8 71 100.0
Solyc12g055760.2 Solanum lycopersicum HOM05D004074 ORTHO05D004717 1.7e-34 148.7 71 98.6
PGSC0003DMG400028842 Solanum tuberosum HOM05D004074 ORTHO05D004717 5.0e-34 147.1 71 97.2
PGSC0003DMG402009187 Solanum tuberosum HOM05D004074 ORTHO05D004717 3.3e-33 144.4 71 94.4
Nitab4.5_0007548g0020 Nicotiana tabacum HOM05D004074 ORTHO05D004717 1.6e-32 142.1 71 93.0
Solyc06g063220.3 Solanum lycopersicum HOM05D004074 ORTHO05D004717 1.6e-32 142.1 71 93.0
Sopen06g022670 Solanum pennellii HOM05D004074 ORTHO05D004717 1.6e-32 142.1 71 93.0
Actinidia38792 Actinidia chinensis HOM05D004074 ORTHO05D004717 2.3e-31 138.3 71 87.3
CiPaw.01G088100 Carya illinoinensis HOM05D004074 ORTHO05D004717 2.3e-31 138.3 71 87.3
Actinidia00635 Actinidia chinensis HOM05D004074 ORTHO05D004717 3.1e-31 137.9 71 87.3
Actinidia25993 Actinidia chinensis HOM05D004074 ORTHO05D004717 3.1e-31 137.9 71 87.3
PGSC0003DMG400026508 Solanum tuberosum HOM05D004074 ORTHO05D004717 5.2e-31 137.1 71 90.1
Gohir.D11G059000 Gossypium hirsutum HOM05D004074 ORTHO05D004717 6.8e-31 136.7 71 87.3
Gorai.007G063900 Gossypium raimondii HOM05D004074 ORTHO05D004717 6.8e-31 136.7 71 87.3
HanXRQChr10g0311531 Helianthus annuus HOM05D004074 ORTHO05D004717 6.8e-31 136.7 71 85.9
ClCG09G001480 Citrullus lanatus HOM05D004074 ORTHO05D004717 8.9e-31 136.3 69 87.0
Gohir.D12G001400 Gossypium hirsutum HOM05D004074 ORTHO05D004717 1.2e-30 136.0 71 85.9
CARHR041810 Cardamine hirsuta HOM05D004074 ORTHO05D004717 1.5e-30 135.6 69 87.0
Gohir.A11G055200 Gossypium hirsutum HOM05D004074 ORTHO05D004717 2.0e-30 135.2 71 85.9
HanXRQChr12g0359921 Helianthus annuus HOM05D004074 ORTHO05D004717 2.0e-30 135.2 71 84.5
Sed0005809 Sechium edule HOM05D004074 ORTHO05D004717 2.0e-30 135.2 69 87.0
Actinidia21867 Actinidia chinensis HOM05D004074 ORTHO05D004717 2.6e-30 134.8 71 84.5
Gorai.008G000800 Gossypium raimondii HOM05D004074 ORTHO05D004717 2.6e-30 134.8 71 84.5
FAN02G0872 Fragaria x ananassa HOM05D004074 ORTHO05D004717 3.4e-30 134.4 69 84.1
FAN05G0051 Fragaria x ananassa HOM05D004074 ORTHO05D004717 3.4e-30 134.4 69 84.1
FAN09G3199 Fragaria x ananassa HOM05D004074 ORTHO05D004717 3.4e-30 134.4 69 84.1
Manes.05G195000 Manihot esculenta HOM05D004074 ORTHO05D004717 3.4e-30 134.4 69 85.5
MELO3C024297.2 Cucumis melo HOM05D004074 ORTHO05D004717 4.4e-30 134.0 69 84.1
Gohir.A12G001600 Gossypium hirsutum HOM05D004074 ORTHO05D004717 5.8e-30 133.7 71 83.1
MD09G1158500 Malus domestica HOM05D004074 ORTHO05D004717 5.8e-30 133.7 69 82.6
AL1G59560 Arabidopsis lyrata HOM05D004074 ORTHO05D004717 7.5e-30 133.3 69 84.1
AT1G51650 Arabidopsis thaliana HOM05D004074 ORTHO05D004717 7.5e-30 133.3 69 84.1
Cc01_g08930 Coffea canephora HOM05D004074 ORTHO05D004717 9.8e-30 132.9 71 84.5
Duzib147G0570 Durio zibethinus HOM05D004074 ORTHO05D004717 9.8e-30 132.9 71 84.5
FvH4_6g37330 Fragaria vesca HOM05D004074 ORTHO05D004717 9.8e-30 132.9 69 82.6
A08p02600 Brassica napus HOM05D004074 ORTHO05D004717 1.3e-29 132.5 68 86.8
BraA08t32299Z Brassica rapa HOM05D004074 ORTHO05D004717 1.3e-29 132.5 68 86.8
Duzib264G1024 Durio zibethinus HOM05D004074 ORTHO05D004717 1.3e-29 132.5 71 83.1
Actinidia31138 Actinidia chinensis HOM05D004074 ORTHO05D004717 2.2e-29 131.7 71 81.7
BcaB04g17185 Brassica carinata HOM05D004074 ORTHO05D004717 2.2e-29 131.7 68 85.3
CsaV3_7G033840 Cucumis sativus L. HOM05D004074 ORTHO05D004717 2.2e-29 131.7 69 82.6
Duzib187G1118 Durio zibethinus HOM05D004074 ORTHO05D004717 2.2e-29 131.7 71 84.5
CSS0037999 Camellia sinensis var. sinensis HOM05D004074 ORTHO05D004717 2.9e-29 131.3 71 80.3
CSS0039874 Camellia sinensis var. sinensis HOM05D004074 ORTHO05D004717 2.9e-29 131.3 71 80.3
CARHR097100 Cardamine hirsuta HOM05D004074 ORTHO05D004717 3.7e-29 131.0 69 82.6
Nn6g31693 Nelumbo nucifera HOM05D004074 ORTHO05D004717 3.7e-29 131.0 69 84.1
Nn8g40291 Nelumbo nucifera HOM05D004074 ORTHO05D004717 3.7e-29 131.0 69 84.1
Sp1g38290 Schrenkiella parvula HOM05D004074 ORTHO05D004717 3.7e-29 131.0 68 85.3
TPR.G2285 Trifolium pratense HOM05D004074 ORTHO05D004717 3.7e-29 131.0 71 81.7
Dinv20359 Davidia involucrata HOM05D004074 ORTHO05D004717 4.9e-29 130.6 69 85.5
Phvul.008G255900 Phaseolus vulgaris HOM05D004074 ORTHO05D004717 4.9e-29 130.6 71 78.9
BcaB04g19151 Brassica carinata HOM05D004074 ORTHO05D004717 8.3e-29 129.8 69 81.2
BcaC01g03518 Brassica carinata HOM05D004074 ORTHO05D004717 8.3e-29 129.8 69 81.2
A05p19470 Brassica napus HOM05D004074 ORTHO05D004717 8.3e-29 129.8 68 83.8
BraA05t20851Z Brassica rapa HOM05D004074 ORTHO05D004717 8.3e-29 129.8 68 83.8
Nn5g30428 Nelumbo nucifera HOM05D004074 ORTHO05D004717 8.3e-29 129.8 70 81.4
Prupe.3G167500 Prunus persica HOM05D004074 ORTHO05D004717 8.3e-29 129.8 69 79.7
PGR102G2231 Punica granatum HOM05D004074 ORTHO05D004717 8.3e-29 129.8 71 81.7
RcHm_v2.0_Chr2g0150171 Rosa chinensis HOM05D004074 ORTHO05D004717 8.3e-29 129.8 69 82.6
TWI77G0047 Tripterygium wilfordii HOM05D004074 ORTHO05D004717 8.3e-29 129.8 69 79.7
BraA01t03480Z Brassica rapa HOM05D004074 ORTHO05D004717 1.1e-28 129.4 69 81.2
CDE02G0689 Ceratophyllum demersum HOM05D004074 ORTHO05D004717 1.4e-28 129.0 71 80.3
Thhalv10011901m.g Eutrema salsugineum HOM05D004074 ORTHO05D004717 1.4e-28 129.0 68 83.8
Sp3g19200 Schrenkiella parvula HOM05D004074 ORTHO05D004717 1.4e-28 129.0 69 79.7
ECA234G0987 Erigeron canadensis HOM05D004074 ORTHO05D004717 1.9e-28 128.6 71 80.3
Peaxi162Scf00038g02442 Petunia axillaris HOM05D004074 ORTHO05D004717 1.9e-28 128.6 62 95.2
CAN.G1073.1 Capsicum annuum HOM05D004074 ORTHO05D004717 2.4e-28 128.3 62 95.2
Hma1.2p1_0039F.1_g024790 Hydrangea macrophylla HOM05D004074 ORTHO05D004717 2.4e-28 128.3 69 82.6
Nitab4.5_0008628g0040 Nicotiana tabacum HOM05D004074 ORTHO05D004717 2.4e-28 128.3 64 89.1
unitig_748.g7476 Utricularia gibba HOM05D004074 ORTHO05D004717 2.4e-28 128.3 71 78.9
BcaB04g20604 Brassica carinata HOM05D004074 ORTHO05D004717 3.2e-28 127.9 69 79.7
BcaNung05296 Brassica carinata HOM05D004074 ORTHO05D004717 3.2e-28 127.9 69 79.7
A01p33680 Brassica napus HOM05D004074 ORTHO05D004717 3.2e-28 127.9 69 79.7
Hund14448 Selenicereus undatus HOM05D004074 ORTHO05D004717 3.2e-28 127.9 69 82.6
BcaB02g11264 Brassica carinata HOM05D004074 ORTHO05D004717 4.1e-28 127.5 68 82.4
Haze_03743 Corylus avellana HOM05D004074 ORTHO05D004717 4.1e-28 127.5 67 83.6
Glyma.07G003700 Glycine max HOM05D004074 ORTHO05D004717 4.1e-28 127.5 71 78.9
Lsat_1_v5_gn_4_88780 Lactuca sativa HOM05D004074 ORTHO05D004717 4.1e-28 127.5 68 82.4
Psat1g059640 Pisum sativum HOM05D004074 ORTHO05D004717 4.1e-28 127.5 69 78.3
Hund11291 Selenicereus undatus HOM05D004074 ORTHO05D004717 4.1e-28 127.5 67 86.6
TWI53G1078 Tripterygium wilfordii HOM05D004074 ORTHO05D004717 4.1e-28 127.5 69 76.8
Dinv37799 Davidia involucrata HOM05D004074 ORTHO05D004717 5.4e-28 127.1 67 83.6
Nitab4.5_0002885g0120 Nicotiana tabacum HOM05D004074 ORTHO05D004717 5.4e-28 127.1 64 89.1
BolC1t04251H Brassica oleracea HOM05D004074 ORTHO05D004717 7.0e-28 126.7 69 78.3
Nitab4.5_0002661g0050 Nicotiana tabacum HOM05D004074 ORTHO05D004717 7.0e-28 126.7 61 93.4
CAN.G790.25 Capsicum annuum HOM05D004074 ORTHO05D004717 9.2e-28 126.3 62 93.5
CDE05G2863 Ceratophyllum demersum HOM05D004074 ORTHO05D004717 9.2e-28 126.3 71 76.1
Migut.I01175 Erythranthe guttata HOM05D004074 ORTHO05D004717 9.2e-28 126.3 69 81.2
BcaC08g43926 Brassica carinata HOM05D004074 ORTHO05D004717 1.2e-27 125.9 68 82.4
C06p13180 Brassica napus HOM05D004074 ORTHO05D004717 1.2e-27 125.9 68 82.4
BolC6t36474H Brassica oleracea HOM05D004074 ORTHO05D004717 1.2e-27 125.9 68 82.4
C01p43050 Brassica napus HOM05D004074 ORTHO05D004717 1.6e-27 125.6 69 76.8
Medtr5g040610 Medicago truncatula HOM05D004074 ORTHO05D004717 1.6e-27 125.6 69 78.3
Nitab4.5_0000357g0290 Nicotiana tabacum HOM05D004074 ORTHO05D004717 1.6e-27 125.6 61 91.8
Nitab4.5_0001691g0090 Nicotiana tabacum HOM05D004074 ORTHO05D004717 1.6e-27 125.6 61 93.4
Aa31LG10G3130 Aethionema arabicum HOM05D004074 ORTHO05D004717 2.0e-27 125.2 69 81.2
CANSAT01G1956 Cannabis sativa HOM05D004074 ORTHO05D004717 2.0e-27 125.2 71 78.9
Carub.0001s4049 Capsella rubella HOM05D004074 ORTHO05D004717 2.0e-27 125.2 68 80.9
vmacro18761 Vaccinium macrocarpon HOM05D004074 ORTHO05D004717 2.0e-27 125.2 63 85.7
THA.LOC104821596 Tarenaya hassleriana HOM05D004074 ORTHO05D004717 2.7e-27 124.8 69 79.7
Psat7g263760 Pisum sativum HOM05D004074 ORTHO05D004717 3.5e-27 124.4 70 75.7
unitig_32.g11555 Utricularia gibba HOM05D004074 ORTHO05D004717 4.6e-27 124.0 71 76.1
Potri.010G250000 Populus trichocarpa HOM05D004074 ORTHO05D004717 6.0e-27 123.6 67 80.6
Cpa.g.sc1009.1 Carica papaya HOM05D004074 ORTHO05D004717 7.8e-27 123.2 61 88.5
Potri.008G008900 Populus trichocarpa HOM05D004074 ORTHO05D004717 7.8e-27 123.2 67 80.6
Glyma.08G222900 Glycine max HOM05D004074 ORTHO05D004717 1.3e-26 122.5 78 73.1
Rhsim08G0247900 Rhododendron simsii HOM05D004074 ORTHO05D004717 1.7e-26 122.1 61 86.9
BolC3t17439H Brassica oleracea HOM05D000606 ORTHO05D001265 3.0e-26 121.3 67 80.6
BraA03t13364Z Brassica rapa HOM05D000606 ORTHO05D001265 3.0e-26 121.3 67 80.6
COL.COLO4_13992 Corchorus olitorius HOM05D004074 ORTHO05D004717 3.9e-26 120.9 62 85.5
Ciclev10026787m.g Citrus clementina HOM05D004074 ORTHO05D004717 5.0e-26 120.6 62 85.5
FAN14G4331 Fragaria x ananassa HOM05D004074 ORTHO05D004717 5.0e-26 120.6 61 85.2
Rhsim06G0076700 Rhododendron simsii HOM05D004074 ORTHO05D004717 5.0e-26 120.6 63 82.5
Thecc.01G124200 Theobroma cacao HOM05D004074 ORTHO05D004717 5.0e-26 120.6 61 86.9
Aqoxy7G03184 Aquilegia oxysepala HOM05D004074 ORTHO05D004717 8.6e-26 119.8 68 77.9
Lj3g0011227 Lotus japonicus HOM05D004074 ORTHO05D004717 1.1e-25 119.4 61 83.6
Thhalv10021996m.g Eutrema salsugineum HOM05D004074 ORTHO05D004717 4.3e-25 117.5 61 82.0
Lalb_Chr25g0278611 Lupinus albus HOM05D004074 ORTHO05D004717 4.3e-25 117.5 67 73.1
VMungo0647G0339 Vigna mungo HOM05D001270 ORTHO05D001099 5.6e-25 117.1 62 82.3
BolC8t49078H Brassica oleracea HOM05D004074 ORTHO05D004717 7.3e-25 116.7 68 76.5
Aa31LG8G7900 Aethionema arabicum HOM05D004074 ORTHO05D004717 9.5e-25 116.3 65 76.9
PSO170G4934 Papaver somniferum HOM05D004074 ORTHO05D004717 9.5e-25 116.3 68 73.5
PSO339G3796 Papaver somniferum HOM05D004074 ORTHO05D004717 9.5e-25 116.3 68 73.5
Oeu040350.2 Olea europaea HOM05D004074 ORTHO05D004717 1.2e-24 115.9 61 82.0
Sabra08G0005100 Salix brachista HOM05D004074 ORTHO05D004717 1.2e-24 115.9 63 82.5
Sabra10G0194600 Salix brachista HOM05D004074 ORTHO05D004717 1.6e-24 115.5 61 83.6
Ah.07g199420 Amaranthus hybridus HOM05D004074 ORTHO05D004717 2.8e-24 114.8 59 84.7
Eucgr.F04009 Eucalyptus grandis HOM05D004074 ORTHO05D004717 6.2e-24 113.6 68 75.0
SHI21232 Sapria himalayana HOM05D004074 ORTHO05D004717 6.2e-24 113.6 69 75.4
QL05p083316 Quercus lobata HOM05D004074 ORTHO05D004717 8.0e-24 113.2 64 76.6
Aqoxy5G02869 Aquilegia oxysepala HOM05D004074 ORTHO05D004717 1.1e-23 112.8 63 77.8
arahy.Tifrunner.gnm1.ann1.9ZAP4M Arachis hypogaea HOM05D004074 ORTHO05D004717 1.1e-23 112.8 61 77.0
Zm00001eb161770 Zea mays HOM05D004074 ORTHO05D004717 1.1e-23 112.8 68 72.1
DCAR_007668 Daucus carota HOM05D004074 ORTHO05D004717 1.4e-23 112.5 64 73.4
SGA_v2.0_scaffold122G33290 Striga asiatica HOM05D004074 ORTHO05D004717 1.4e-23 112.5 60 80.0
BcaC09g49057 Brassica carinata HOM05D004074 ORTHO05D004717 2.3e-23 111.7 61 77.0
Zm00001eb357940 Zea mays HOM05D004074 ORTHO05D004717 2.3e-23 111.7 68 70.6
EL10Ac5g12205 Beta vulgaris HOM05D004074 ORTHO05D004717 3.1e-23 111.3 61 80.3
TAR626G1506 Trochodendron aralioides HOM05D004074 ORTHO05D004717 5.2e-23 110.5 59 79.7
BcaC08g44915 Brassica carinata HOM05D004074 ORTHO05D004717 8.9e-23 109.8 69 73.9
Os08g0250200 Oryza sativa ssp. japonica HOM05D004074 ORTHO05D004717 8.9e-23 109.8 65 73.8
BcaC03g13642 Brassica carinata HOM05D000239 ORTHO05D004717 1.2e-22 109.4 66 72.7
ATR0580G305 Amborella trichopoda HOM05D004074 ORTHO05D004717 1.5e-22 109.0 64 70.3
C02p10320 Brassica napus HOM05D004074 ORTHO05D004717 1.5e-22 109.0 65 73.8
MBI04_g18036_MAGBIO Magnolia biondii HOM05D004074 ORTHO05D004717 2.0e-22 108.6 60 73.3
HPP92_021730 Vanilla planifolia HOM05D004074 ORTHO05D004717 2.0e-22 108.6 60 76.7
SGA_v2.0_scaffold71G24013 Striga asiatica HOM05D001270 ORTHO05D001099 4.4e-22 107.5 60 78.3
C06p25410 Brassica napus HOM05D004074 ORTHO05D004717 5.8e-22 107.1 62 77.4
BolC6t37702H Brassica oleracea HOM05D004074 ORTHO05D004717 5.8e-22 107.1 62 77.4
QL05p083267 Quercus lobata HOM05D004074 ORTHO05D004717 5.8e-22 107.1 62 72.6
AUR62018789 Chenopodium quinoa HOM05D004074 ORTHO05D004717 9.8e-22 106.3 61 78.7
SEGI_28642 Sequoiadendron giganteum HOM05D004074 ORTHO05D004717 1.3e-21 105.9 64 65.6
TAR383G0992 Trochodendron aralioides HOM05D004074 ORTHO05D004717 1.7e-21 105.5 59 74.6
GSVIVG01037184001 Vitis vinifera HOM05D004074 ORTHO05D004717 6.0e-19 97.1 63 66.7
AagrBONN_evm.TU.Sc2ySwM_117.3571 Anthoceros agrestis HOM05D004074 ORTHO05D004717 5.1e-18 94.0 65 56.9
AagrBONN_evm.TU.Sc2ySwM_344.1495 Anthoceros agrestis HOM05D004074 ORTHO05D004717 2.5e-17 91.7 65 55.4
SalBow6G5392 Salvia bowleyana HOM05D004074 ORTHO05D004717 4.3e-17 90.9 48 79.2
Thhalv10022333m.g Eutrema salsugineum HOM05D004074 ORTHO05D004717 5.6e-17 90.5 67 62.7
HPP92_021648 Vanilla planifolia HOM05D004074 ORTHO05D004717 7.3e-17 90.1 59 67.8
MBI14_g24286_MAGBIO Magnolia biondii HOM05D004074 ORTHO05D004717 9.5e-17 89.7 47 78.7
Mapoly0001s0230 Marchantia polymorpha HOM05D004074 ORTHO05D004717 1.2e-16 89.4 69 56.5
GSVIVG01037963001 Vitis vinifera HOM05D004074 ORTHO05D004717 4.7e-16 87.4 45 82.2
Lsat_1_v5_gn_5_137500 Lactuca sativa HOM05D001270 ORTHO05D001099 6.2e-16 87.0 57 70.2
Pp3c1_12120 Physcomitrium patens HOM05D004074 ORTHO05D004717 8.1e-16 86.7 62 56.5
Pp3c2_24870 Physcomitrium patens HOM05D004074 ORTHO05D004717 8.1e-16 86.7 62 56.5
C02p45000 Brassica napus HOM05D000128 ORTHO05D000059 8.9e-15 83.2 45 80.0
SMO351G0623 Selaginella moellendorffii HOM05D004074 ORTHO05D004717 1.5e-14 82.4 57 59.6
Medtr4g005960 Medicago truncatula HOM05D004074 ORTHO05D004717 1.1e-12 76.3 62 56.5
MCO11G253 Micromonas commoda HOM05D004074 ORTHO05D004717 1.4e-12 75.9 67 47.8
Pp3c1_10140 Physcomitrium patens HOM05D004074 ORTHO05D004717 5.4e-12 73.9 59 55.9
Zm00001eb394860 Zea mays HOM05D004074 ORTHO05D004717 1.6e-11 72.4 53 60.4
PSO455G0136 Papaver somniferum HOM05D004074 ORTHO05D004717 4.6e-11 70.9 60 58.3
PRCOL_00000946 Prasinoderma coloniale HOM05D004074 ORTHO05D004717 7.8e-11 70.1 55 50.9
Cre10.g420700 Chlamydomonas reinhardtii HOM05D004074 ORTHO05D004717 6.2e-08 60.5 62 41.9
QL05p083294 Quercus lobata HOM05D004074 ORTHO05D004717 2.6e-06 55.1 53 52.8


User provided reference genes

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