Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen12g024210 Solanum pennellii HOM05D006671 ORTHO05D008637 0.0e+00 1153.3 574 100.0
Solyc12g055740.2 Solanum lycopersicum HOM05D006671 ORTHO05D008637 2.7e-303 1044.6 531 97.9
PGSC0003DMG402028844 Solanum tuberosum HOM05D006671 ORTHO05D008637 7.6e-298 1026.5 531 96.4
PGSC0003DMG401028844 Solanum tuberosum HOM05D006671 ORTHO05D008637 7.1e-288 993.4 531 93.6
CAN.G390.42 Capsicum annuum HOM05D006671 ORTHO05D008637 1.9e-272 942.2 534 88.2
Nitab4.5_0000357g0220 Nicotiana tabacum HOM05D006671 ORTHO05D008637 4.0e-214 748.4 537 74.9
Nitab4.5_0003469g0010 Nicotiana tabacum HOM05D006671 ORTHO05D008637 6.2e-199 698.0 541 68.9
CSS0038482 Camellia sinensis var. sinensis HOM05D006671 ORTHO05D008637 2.4e-195 686.0 535 64.3
vmacro18708 Vaccinium macrocarpon HOM05D006671 ORTHO05D008637 8.6e-193 677.6 539 63.1
Rhsim08G0246200 Rhododendron simsii HOM05D006671 ORTHO05D008637 5.2e-190 668.3 546 62.8
Cc04_g00530 Coffea canephora HOM05D006671 ORTHO05D008637 3.4e-189 665.6 535 62.2
Phvul.010G121800 Phaseolus vulgaris HOM05D006671 ORTHO05D008637 1.7e-185 653.3 542 60.3
DCAR_007665 Daucus carota HOM05D006671 ORTHO05D008637 4.3e-184 648.7 556 58.1
MSTRG.9549 Avicennia marina HOM05D006671 ORTHO05D008637 2.1e-183 646.4 535 62.1
ECA234G0268 Erigeron canadensis HOM05D006671 ORTHO05D008637 3.1e-182 642.5 533 60.6
Manes.11G010600 Manihot esculenta HOM05D006671 ORTHO05D008637 9.0e-182 641.0 538 59.7
TAR623G0926 Trochodendron aralioides HOM05D006671 ORTHO05D008637 9.0e-182 641.0 536 60.4
Glyma.07G047100 Glycine max HOM05D006671 ORTHO05D008637 2.0e-181 639.8 542 59.0
SalBow7G2314 Salvia bowleyana HOM05D006671 ORTHO05D008637 2.6e-181 639.4 534 60.5
Lj5C27T5 Lonicera japonica HOM05D006671 ORTHO05D008637 7.6e-181 637.9 494 63.8
Migut.D00903 Erythranthe guttata HOM05D006671 ORTHO05D008637 1.7e-180 636.7 538 60.4
CiPaw.03G010100 Carya illinoinensis HOM05D006671 ORTHO05D008637 8.4e-180 634.4 545 59.1
Glyma.16G015100 Glycine max HOM05D006671 ORTHO05D008637 8.4e-180 634.4 545 58.7
Peaxi162Scf00177g00616 Petunia axillaris HOM05D006671 ORTHO05D008637 7.1e-179 631.3 535 65.4
Actinidia24409 Actinidia chinensis HOM05D006671 ORTHO05D008637 9.3e-179 630.9 499 62.7
TPR.G26443 Trifolium pratense HOM05D006671 ORTHO05D008637 6.0e-178 628.2 538 59.7
Lalb_Chr10g0101031 Lupinus albus HOM05D006671 ORTHO05D008637 3.9e-177 625.5 541 57.9
Nn8g41287 Nelumbo nucifera HOM05D006671 ORTHO05D008637 3.9e-177 625.5 535 58.1
Thecc.06G048900 Theobroma cacao HOM05D006671 ORTHO05D008637 3.9e-177 625.5 536 59.1
Ciclev10025368m.g Citrus clementina HOM05D006671 ORTHO05D008637 1.1e-176 624.0 532 60.3
HanXRQChr10g0311581 Helianthus annuus HOM05D006671 ORTHO05D008637 1.5e-176 623.6 532 59.4
PGR119G0898 Punica granatum HOM05D006671 ORTHO05D008637 3.3e-176 622.5 539 58.3
Eucgr.I02172 Eucalyptus grandis HOM05D006671 ORTHO05D008637 9.6e-176 620.9 533 57.8
MD09G1171100 Malus domestica HOM05D006671 ORTHO05D008637 2.8e-175 619.4 536 59.7
TWI59G0357 Tripterygium wilfordii HOM05D006671 ORTHO05D008637 2.4e-174 616.3 532 58.1
Potri.001G161100 Populus trichocarpa HOM05D006671 ORTHO05D008637 3.1e-174 615.9 532 58.5
SGA_v2.0_scaffold4G02101 Striga asiatica HOM05D006671 ORTHO05D008637 3.1e-174 615.9 537 60.7
Sc12g0010960 Simmondsia chinensis HOM05D006671 ORTHO05D008637 4.0e-174 615.5 532 58.1
Lj3g0013980 Lotus japonicus HOM05D006671 ORTHO05D008637 1.2e-173 614.0 549 56.5
COL.COLO4_26801 Corchorus olitorius HOM05D006671 ORTHO05D008637 4.5e-173 612.1 534 59.2
Psat4g165440 Pisum sativum HOM05D006671 ORTHO05D008637 4.5e-173 612.1 538 58.0
Duzib160G0342 Durio zibethinus HOM05D006671 ORTHO05D008637 7.6e-173 611.3 537 57.9
Medtr8g023620 Medicago truncatula HOM05D006671 ORTHO05D008637 4.9e-172 608.6 540 57.6
Atru.chr1.4182 Acer truncatum HOM05D006671 ORTHO05D008637 2.4e-171 606.3 535 59.4
CANSAT56G3116 Cannabis sativa HOM05D006671 ORTHO05D008637 5.5e-171 605.1 537 58.7
Prupe.3G029600 Prunus persica HOM05D006671 ORTHO05D008637 7.1e-171 604.7 537 58.5
RcHm_v2.0_Chr2g0148251 Rosa chinensis HOM05D006671 ORTHO05D008637 2.7e-170 602.8 535 59.3
Gohir.D13G119900 Gossypium hirsutum HOM05D006671 ORTHO05D008637 3.5e-170 602.4 537 56.8
Gorai.013G134300 Gossypium raimondii HOM05D006671 ORTHO05D008637 5.1e-169 598.6 541 56.7
BolC3t21495H Brassica oleracea HOM05D006671 ORTHO05D008637 1.3e-167 594.0 529 54.3
EL10Ac7g18235 Beta vulgaris HOM05D006671 ORTHO05D008637 1.6e-167 593.6 533 55.7
Thhalv10011378m.g Eutrema salsugineum HOM05D006671 ORTHO05D008637 1.4e-166 590.5 531 54.8
BraA08t32194Z Brassica rapa HOM05D006671 ORTHO05D008637 2.4e-166 589.7 531 55.2
Sp1g40250 Schrenkiella parvula HOM05D006671 ORTHO05D008637 2.4e-166 589.7 532 55.5
A08p01430 Brassica napus HOM05D006671 ORTHO05D008637 4.0e-166 589.0 530 54.9
BcaB04g17063 Brassica carinata HOM05D006671 ORTHO05D008637 3.4e-165 585.9 530 54.7
Lsat_1_v5_gn_5_137600 Lactuca sativa HOM05D006671 ORTHO05D008637 1.3e-164 583.9 522 57.1
BcaC01g01410 Brassica carinata HOM05D006671 ORTHO05D008637 2.2e-164 583.2 527 54.3
PSO017G0187 Papaver somniferum HOM05D006671 ORTHO05D008637 2.9e-164 582.8 538 56.7
C03p91740 Brassica napus HOM05D006671 ORTHO05D008637 8.4e-164 581.3 527 54.1
Aqoxy2G04033 Aquilegia oxysepala HOM05D006671 ORTHO05D008637 1.1e-163 580.9 535 55.1
Aa31LG10G1550 Aethionema arabicum HOM05D006671 ORTHO05D008637 1.4e-163 580.5 532 56.2
AT1G53710 Arabidopsis thaliana HOM05D006671 ORTHO05D008637 7.1e-163 578.2 533 54.0
Cpa.g.sc229.10 Carica papaya HOM05D006671 ORTHO05D008637 9.3e-163 577.8 536 55.0
Carub.0001s4299 Capsella rubella HOM05D006671 ORTHO05D008637 3.0e-161 572.8 530 52.6
AL1G62410 Arabidopsis lyrata HOM05D006671 ORTHO05D008637 8.7e-161 571.2 533 52.5
FvH4_6g36250 Fragaria vesca HOM05D006671 ORTHO05D008637 8.7e-161 571.2 534 56.7
FAN14G1234 Fragaria x ananassa HOM05D006671 ORTHO05D008637 4.3e-160 568.9 534 56.6
CARHR044010 Cardamine hirsuta HOM05D006671 ORTHO05D008637 6.3e-159 565.1 531 52.9
HPP92_002242 Vanilla planifolia HOM05D006671 ORTHO05D008637 8.2e-159 564.7 533 53.8
Haze_14039 Corylus avellana HOM05D006671 ORTHO05D008637 4.1e-158 562.4 635 49.6
Os03g0397300 Oryza sativa ssp. japonica HOM05D006671 ORTHO05D008637 5.3e-158 562.0 531 53.7
arahy.Tifrunner.gnm1.ann1.YS0GDU Arachis hypogaea HOM05D006671 ORTHO05D008637 1.2e-157 560.8 540 53.5
arahy.Tifrunner.gnm1.ann1.NMV212 Arachis hypogaea HOM05D006671 ORTHO05D008637 3.4e-157 559.3 540 53.5
Ah.08g217540 Amaranthus hybridus HOM05D006671 ORTHO05D008637 1.3e-156 557.4 534 53.9
Sabra01G0131200 Salix brachista HOM05D006671 ORTHO05D008637 3.8e-156 555.8 572 52.1
GSVIVG01026409001 Vitis vinifera HOM05D006671 ORTHO05D008637 7.9e-154 548.1 758 42.2
Actinidia33812 Actinidia chinensis HOM05D006671 ORTHO05D008637 1.8e-153 547.0 532 54.9
Zm00001eb392730 Zea mays HOM05D006671 ORTHO05D008637 5.1e-153 545.4 534 52.2
Dinv20369 Davidia involucrata HOM05D006671 ORTHO05D008637 1.1e-152 544.3 367 71.1
FAN09G2187 Fragaria x ananassa HOM05D006671 ORTHO05D008637 7.4e-152 541.6 534 54.5
MBI13_g05970_MAGBIO Magnolia biondii HOM05D006671 ORTHO05D008637 6.3e-151 538.5 482 56.6
AUR62001377 Chenopodium quinoa HOM05D006671 ORTHO05D008637 2.6e-149 533.1 486 55.8
unitig_699.g19656 Utricularia gibba HOM05D006671 ORTHO05D001254 3.2e-147 526.2 537 53.1
PSO170G0973 Papaver somniferum HOM05D006671 ORTHO05D008637 7.9e-146 521.5 493 55.2
FAN14G2634 Fragaria x ananassa HOM05D006671 ORTHO05D008637 1.3e-143 514.2 534 53.4
AUR62044064 Chenopodium quinoa HOM05D006671 ORTHO05D008637 2.8e-143 513.1 473 55.2
CDE06G0010 Ceratophyllum demersum HOM05D006671 ORTHO05D008637 2.4e-142 510.0 474 54.2
Pp3c21_8010 Physcomitrium patens HOM05D006671 ORTHO05D008637 1.6e-125 454.1 531 44.8
SEGI_35568 Sequoiadendron giganteum HOM05D006671 ORTHO05D008637 1.6e-125 454.1 441 52.6
SMO347G0345 Selaginella moellendorffii HOM05D006671 ORTHO05D008637 2.3e-113 413.7 530 42.6
Ca_23471_v3 Cicer arietinum L. HOM05D006671 ORTHO05D008637 4.9e-111 406.0 471 48.4
AagrBONN_evm.TU.Sc2ySwM_362.1979 Anthoceros agrestis HOM05D006671 ORTHO05D008637 1.2e-109 401.4 533 41.8
VMungo0331G0057 Vigna mungo HOM05D006671 ORTHO05D008637 7.3e-107 392.1 297 63.6
Hma1.2p1_1104F.1_g257490 Hydrangea macrophylla HOM05D006671 ORTHO05D008637 1.4e-102 377.9 259 69.9
THA.LOC104822767 Tarenaya hassleriana HOM05D006671 ORTHO05D008637 1.8e-102 377.5 370 50.8
QL03p047059 Quercus lobata HOM05D006671 ORTHO05D008637 4.1e-94 349.7 261 65.9
Hma1.2p1_1104F.1_g257500 Hydrangea macrophylla HOM05D006671 ORTHO05D008637 1.9e-91 340.9 268 65.3
Oeu006761.2 Olea europaea HOM05D006671 ORTHO05D008637 2.0e-88 330.9 297 57.6
Mapoly0048s0109 Marchantia polymorpha HOM05D006671 ORTHO05D008637 3.8e-79 300.1 526 35.4
QL03p047068 Quercus lobata HOM05D006671 ORTHO05D008637 3.3e-75 287.0 278 54.7
BcaNung02916 Brassica carinata HOM05D006671 ORTHO05D008637 8.1e-74 282.3 495 35.8
Gohir.A13G116750 Gossypium hirsutum HOM05D006671 ORTHO05D008637 4.9e-71 273.1 202 64.4
FAN02G1271 Fragaria x ananassa HOM05D006671 ORTHO05D008637 1.2e-64 251.9 310 46.1
Gohir.A13G116801 Gossypium hirsutum HOM05D006671 ORTHO05D008637 3.4e-64 250.4 258 51.9
ATR0006G018 Amborella trichopoda HOM05D006671 ORTHO05D008637 1.3e-58 231.9 266 48.1
MD17G1156100 Malus domestica HOM05D006671 ORTHO05D008637 3.4e-56 223.8 441 36.3
THA.LOC104803433 Tarenaya hassleriana HOM05D006671 ORTHO05D008637 1.9e-54 218.0 178 58.4
SEGI_04788 Sequoiadendron giganteum HOM05D006671 ORTHO05D008637 4.6e-53 213.4 265 46.0
Actinidia21851 Actinidia chinensis HOM05D006671 ORTHO05D008637 1.7e-47 194.9 183 55.7
HPP92_002174 Vanilla planifolia HOM05D000872 ORTHO05D007886 2.2e-42 177.9 286 39.5
MCO09G741 Micromonas commoda HOM05D006671 ORTHO05D008637 3.8e-39 167.2 426 29.8
Hund05690 Selenicereus undatus HOM05D006671 ORTHO05D008637 7.2e-38 162.9 126 65.9
Actinidia21852 Actinidia chinensis HOM05D006671 ORTHO05D008637 4.5e-32 143.7 123 56.1
FAN05G4676 Fragaria x ananassa HOM05D006671 ORTHO05D008637 2.5e-22 111.3 111 55.9
Lsat_1_v5_gn_2_122021 Lactuca sativa HOM05D006671 ORTHO05D008637 3.6e-21 107.5 151 42.4
Cfa022026 Carpinus fangiana HOM05D002393 ORTHO05D123579 2.8e-18 97.8 508 25.6
BcaC09g48416 Brassica carinata HOM05D006671 ORTHO05D027459 1.5e-11 75.5 104 41.3
C01p50010 Brassica napus HOM05D010519 ORTHO05D027459 1.5e-11 75.5 104 41.3
BolC1t04958H Brassica oleracea HOM05D010519 ORTHO05D027459 1.5e-11 75.5 104 41.3
Pp3c20_15640 Physcomitrium patens HOM05D008167 ORTHO05D010296 5.7e-11 73.6 352 23.6
Lsat_1_v5_gn_1_119700 Lactuca sativa HOM05D006671 ORTHO05D011576 4.8e-10 70.5 85 42.4
Lsat_1_v5_gn_2_91241 Lactuca sativa HOM05D006671 ORTHO05D011576 1.4e-09 68.9 84 42.9
EL10Ac1g01257 Beta vulgaris HOM05D008167 ORTHO05D010296 9.1e-09 66.2 415 22.4
AUR62027724 Chenopodium quinoa HOM05D008167 ORTHO05D010296 4.5e-08 63.9 412 21.4
Lj3g0012000 Lotus japonicus HOM05D008167 ORTHO05D010296 7.7e-08 63.2 358 23.5
arahy.Tifrunner.gnm1.ann1.R32LA5 Arachis hypogaea HOM05D008167 ORTHO05D010296 3.2e-06 57.8 405 21.2


User provided reference genes

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