Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen12g024150 Solanum pennellii HOM05D005200 ORTHO05D005760 5.2e-64 247.7 136 100.0
Solyc12g055700.3 Solanum lycopersicum HOM05D005200 ORTHO05D005760 9.3e-53 210.3 136 79.4
PGSC0003DMG402028848 Solanum tuberosum HOM05D005200 ORTHO05D005760 9.3e-53 210.3 136 80.9
Peaxi162Scf00038g02243 Petunia axillaris HOM05D005200 ORTHO05D005760 7.4e-26 120.9 133 53.4
Nitab4.5_0008798g0020 Nicotiana tabacum HOM05D005200 ORTHO05D005760 3.7e-25 118.6 133 51.1
PGSC0003DMG400009175 Solanum tuberosum HOM05D005200 ORTHO05D005760 2.6e-23 112.5 75 66.7
Sopen03g041350 Solanum pennellii HOM05D005200 ORTHO05D005760 5.5e-21 104.8 77 64.9
Solyc03g123580.4 Solanum lycopersicum HOM05D005200 ORTHO05D005760 7.2e-21 104.4 71 67.6
PGSC0003DMG400028866 Solanum tuberosum HOM05D005200 ORTHO05D005760 5.7e-18 94.7 74 85.1
Oeu015475.1 Olea europaea HOM05D005200 ORTHO05D005760 2.4e-16 89.4 67 64.2
SalBow7G2254 Salvia bowleyana HOM05D005200 ORTHO05D005760 3.1e-16 89.0 68 57.4
Duzib160G0856 Durio zibethinus HOM05D005200 ORTHO05D005760 2.0e-15 86.3 70 58.6
Duzib235G1369 Durio zibethinus HOM05D005200 ORTHO05D005760 2.0e-15 86.3 70 57.1
Dinv20386 Davidia involucrata HOM05D005200 ORTHO05D005760 2.6e-15 85.9 70 55.7
GSVIVG01016673001 Vitis vinifera HOM05D005200 ORTHO05D005760 3.4e-15 85.5 68 55.9
Oeu008400.1 Olea europaea HOM05D005200 ORTHO05D005760 4.5e-15 85.1 70 55.7
MSTRG.10915 Avicennia marina HOM05D005200 ORTHO05D005760 1.0e-14 84.0 72 58.3
CANSAT56G3023 Cannabis sativa HOM05D005200 ORTHO05D005760 1.0e-14 84.0 70 51.4
Migut.I01128 Erythranthe guttata HOM05D005200 ORTHO05D005760 1.7e-14 83.2 69 58.0
Gohir.A06G143500 Gossypium hirsutum HOM05D005200 ORTHO05D005760 1.7e-14 83.2 70 55.7
FAN02G2923 Fragaria x ananassa HOM05D005200 ORTHO05D005760 2.2e-14 82.8 70 51.4
FAN14G3672 Fragaria x ananassa HOM05D005200 ORTHO05D005760 2.2e-14 82.8 70 51.4
Actinidia21832 Actinidia chinensis HOM05D005200 ORTHO05D005760 5.0e-14 81.6 70 55.7
Actinidia26000 Actinidia chinensis HOM05D005200 ORTHO05D005760 5.0e-14 81.6 68 55.9
FvH4_6g35780 Fragaria vesca HOM05D005200 ORTHO05D005760 5.0e-14 81.6 70 50.0
FAN09G2652 Fragaria x ananassa HOM05D005200 ORTHO05D005760 5.0e-14 81.6 70 50.0
FAN14G2768 Fragaria x ananassa HOM05D005200 ORTHO05D005760 5.0e-14 81.6 70 50.0
RcHm_v2.0_Chr2g0147821 Rosa chinensis HOM05D005200 ORTHO05D005760 5.0e-14 81.6 57 56.1
MSTRG.4536 Avicennia marina HOM05D005200 ORTHO05D005760 6.5e-14 81.3 71 54.9
Dinv37821 Davidia involucrata HOM05D005200 ORTHO05D005760 6.5e-14 81.3 70 52.9
Rhsim08G0244400 Rhododendron simsii HOM05D005200 ORTHO05D005760 8.5e-14 80.9 73 49.3
SalBow6G5493 Salvia bowleyana HOM05D005200 ORTHO05D005760 8.5e-14 80.9 71 53.5
Thecc.06G129700 Theobroma cacao HOM05D005200 ORTHO05D005760 8.5e-14 80.9 70 57.1
TPR.G18172 Trifolium pratense HOM05D005200 ORTHO05D005760 1.1e-13 80.5 71 52.1
Gorai.010G173300 Gossypium raimondii HOM05D005200 ORTHO05D005760 2.5e-13 79.3 70 52.9
Sed0021338 Sechium edule HOM05D005200 ORTHO05D005760 3.2e-13 79.0 71 53.5
TWI23G1266 Tripterygium wilfordii HOM05D005200 ORTHO05D005760 3.2e-13 79.0 60 56.7
ClCG09G001380 Citrullus lanatus HOM05D005200 ORTHO05D005760 5.5e-13 78.2 71 50.7
COL.COLO4_30860 Corchorus olitorius HOM05D005200 ORTHO05D005760 5.5e-13 78.2 71 56.3
Actinidia31148 Actinidia chinensis HOM05D005200 ORTHO05D005760 7.2e-13 77.8 71 53.5
THA.LOC104815599 Tarenaya hassleriana HOM05D005200 ORTHO05D005760 9.4e-13 77.4 72 51.4
Cc04_g00760 Coffea canephora HOM05D005200 ORTHO05D005760 1.2e-12 77.0 134 38.1
FAN05G3446 Fragaria x ananassa HOM05D005200 ORTHO05D005760 1.6e-12 76.6 70 50.0
Gohir.A09G075600 Gossypium hirsutum HOM05D005200 ORTHO05D005760 2.1e-12 76.3 70 54.3
MD09G1173200 Malus domestica HOM05D005200 ORTHO05D005760 2.1e-12 76.3 67 46.3
MELO3C024308.2 Cucumis melo HOM05D005200 ORTHO05D005760 3.6e-12 75.5 71 49.3
Cpa.g.sc25.187 Carica papaya HOM05D005200 ORTHO05D005760 4.7e-12 75.1 59 54.2
CiPaw.01G211800 Carya illinoinensis HOM05D005200 ORTHO05D005760 4.7e-12 75.1 61 55.7
Ciclev10026732m.g Citrus clementina HOM05D005200 ORTHO05D005760 4.7e-12 75.1 69 47.8
CiPaw.02G131300 Carya illinoinensis HOM05D005200 ORTHO05D005760 6.1e-12 74.7 61 57.4
Gohir.D09G075300 Gossypium hirsutum HOM05D005200 ORTHO05D005760 6.1e-12 74.7 70 52.9
Gorai.006G090400 Gossypium raimondii HOM05D005200 ORTHO05D005760 6.1e-12 74.7 70 52.9
Atru.chr1.4140 Acer truncatum HOM05D005200 ORTHO05D005760 7.9e-12 74.3 70 48.6
TWI14G0574 Tripterygium wilfordii HOM05D005200 ORTHO05D005760 7.9e-12 74.3 58 51.7
Gorai.011G055500 Gossypium raimondii HOM05D005200 ORTHO05D005760 1.0e-11 73.9 126 39.7
MD17G1154100 Malus domestica HOM05D005200 ORTHO05D005760 1.0e-11 73.9 68 47.1
Manes.11G013000 Manihot esculenta HOM05D005200 ORTHO05D005760 1.0e-11 73.9 62 53.2
TAR626G1734 Trochodendron aralioides HOM05D005200 ORTHO05D005760 1.0e-11 73.9 70 52.9
CsaV3_7G033950 Cucumis sativus L. HOM05D005200 ORTHO05D005760 1.4e-11 73.6 69 49.3
Nn6g35724 Nelumbo nucifera HOM05D005200 ORTHO05D005760 1.8e-11 73.2 74 52.7
PSO135G0283 Papaver somniferum HOM05D005200 ORTHO05D005760 1.8e-11 73.2 70 45.7
QL05p001275 Quercus lobata HOM05D005200 ORTHO05D005760 1.8e-11 73.2 70 52.9
THA.LOC104822615 Tarenaya hassleriana HOM05D005200 ORTHO05D005760 1.8e-11 73.2 72 48.6
Haze_16132 Corylus avellana HOM05D005200 ORTHO05D005760 2.3e-11 72.8 64 56.2
Thhalv10021716m.g Eutrema salsugineum HOM05D005200 ORTHO05D005760 2.3e-11 72.8 72 45.8
AL3G26600 Arabidopsis lyrata HOM05D005200 ORTHO05D005760 3.0e-11 72.4 72 45.8
AT3G14280 Arabidopsis thaliana HOM05D005200 ORTHO05D005760 3.0e-11 72.4 72 47.2
CARHR089210 Cardamine hirsuta HOM05D005200 ORTHO05D005760 3.0e-11 72.4 67 50.7
AUR62001409 Chenopodium quinoa HOM05D000001 ORTHO05D009753 3.0e-11 72.4 74 47.3
Eucgr.I02161 Eucalyptus grandis HOM05D005200 ORTHO05D005760 3.0e-11 72.4 70 45.7
Gohir.A10G047648 Gossypium hirsutum HOM05D005200 ORTHO05D005760 3.9e-11 72.0 126 38.9
Manes.04G150600 Manihot esculenta HOM05D005200 ORTHO05D005760 3.9e-11 72.0 71 47.9
Phvul.010G123400 Phaseolus vulgaris HOM05D005200 ORTHO05D005760 5.1e-11 71.6 71 46.5
Potri.003G072400 Populus trichocarpa HOM05D005200 ORTHO05D005760 5.1e-11 71.6 60 51.7
Sabra03G0043200 Salix brachista HOM05D005200 ORTHO05D005760 5.1e-11 71.6 62 53.2
Carub.0003s1397 Capsella rubella HOM05D005200 ORTHO05D005760 6.7e-11 71.2 67 49.3
Gohir.D10G051950 Gossypium hirsutum HOM05D005200 ORTHO05D005760 6.7e-11 71.2 126 38.9
Sabra01G0129600 Salix brachista HOM05D005200 ORTHO05D005760 6.7e-11 71.2 60 51.7
AUR62025618 Chenopodium quinoa HOM05D000001 ORTHO05D009753 8.8e-11 70.9 74 47.3
THA.LOC104810392 Tarenaya hassleriana HOM05D005200 ORTHO05D005760 8.8e-11 70.9 73 49.3
Aa31LG8G1550 Aethionema arabicum HOM05D005200 ORTHO05D005760 1.5e-10 70.1 73 46.6
Cfa003464 Carpinus fangiana HOM05D005200 ORTHO05D005760 1.5e-10 70.1 52 59.6
Glyma.16G013600 Glycine max HOM05D005200 ORTHO05D005760 1.5e-10 70.1 71 46.5
HanXRQChr12g0360121 Helianthus annuus HOM05D005200 ORTHO05D005760 2.0e-10 69.7 60 48.3
VMungo0331G0914 Vigna mungo HOM05D005200 ORTHO05D005760 2.0e-10 69.7 71 45.1
Potri.001G163100 Populus trichocarpa HOM05D005200 ORTHO05D005760 2.6e-10 69.3 59 52.5
Glyma.19G262400 Glycine max HOM05D005200 ORTHO05D005760 3.3e-10 68.9 70 45.7
HanXRQChr09g0277231 Helianthus annuus HOM05D005200 ORTHO05D005760 3.3e-10 68.9 68 60.3
BcaB04g18835 Brassica carinata HOM05D005200 ORTHO05D005760 4.4e-10 68.6 67 47.8
Sp3g12570 Schrenkiella parvula HOM05D005200 ORTHO05D005760 4.4e-10 68.6 67 49.3
arahy.Tifrunner.gnm1.ann1.7PP1M3 Arachis hypogaea HOM05D005200 ORTHO05D005760 7.4e-10 67.8 72 50.0
Lsat_1_v5_gn_4_92221 Lactuca sativa HOM05D005200 ORTHO05D005760 7.4e-10 67.8 68 54.4
Lalb_Chr04g0261221 Lupinus albus HOM05D005200 ORTHO05D005760 7.4e-10 67.8 68 50.0
Prupe.3G031300 Prunus persica HOM05D005200 ORTHO05D005760 7.4e-10 67.8 55 54.5
PGR119G0182 Punica granatum HOM05D005200 ORTHO05D005760 7.4e-10 67.8 70 45.7
Lalb_Chr15g0076711 Lupinus albus HOM05D005200 ORTHO05D005760 9.7e-10 67.4 70 47.1
Lsat_1_v5_gn_5_137940 Lactuca sativa HOM05D005200 ORTHO05D005760 1.3e-09 67.0 60 51.7
BcaC09g48397 Brassica carinata HOM05D005200 ORTHO05D005760 1.7e-09 66.6 67 46.3
A01p39430 Brassica napus HOM05D005200 ORTHO05D005760 1.7e-09 66.6 67 46.3
BraA01t03983Z Brassica rapa HOM05D005200 ORTHO05D005760 1.7e-09 66.6 67 46.3
ECA234G4728 Erigeron canadensis HOM05D005200 ORTHO05D005760 1.7e-09 66.6 61 49.2
Lalb_Chr10g0101121 Lupinus albus HOM05D005200 ORTHO05D005760 1.7e-09 66.6 72 47.2
A05p35100 Brassica napus HOM05D005200 ORTHO05D005760 2.2e-09 66.2 62 51.6
HanXRQChr10g0311991 Helianthus annuus HOM05D005200 ORTHO05D005760 2.8e-09 65.9 61 49.2
BraA05t22323Z Brassica rapa HOM05D005200 ORTHO05D005760 3.7e-09 65.5 62 50.0
Medtr7g117550 Medicago truncatula HOM05D005200 ORTHO05D005760 3.7e-09 65.5 80 47.5
BcaB06g25397 Brassica carinata HOM05D005200 ORTHO05D005760 4.8e-09 65.1 59 52.5
ClCG07G014310 Citrullus lanatus HOM05D005200 ORTHO05D005760 4.8e-09 65.1 75 52.0
C01p50260 Brassica napus HOM05D005200 ORTHO05D005760 6.3e-09 64.7 67 44.8
BolC1t04981H Brassica oleracea HOM05D005200 ORTHO05D005760 6.3e-09 64.7 67 44.8
Gohir.D06G148800 Gossypium hirsutum HOM05D005200 ORTHO05D005760 6.3e-09 64.7 49 63.3
Lj1g0005720 Lotus japonicus HOM05D005200 ORTHO05D005760 6.3e-09 64.7 77 45.5
vmacro15084 Vaccinium macrocarpon HOM05D005200 ORTHO05D005760 6.3e-09 64.7 61 54.1
arahy.Tifrunner.gnm1.ann1.F1PVR5 Arachis hypogaea HOM05D005200 ORTHO05D005760 8.2e-09 64.3 71 49.3
arahy.Tifrunner.gnm1.ann1.56RDUW Arachis hypogaea HOM05D005200 ORTHO05D005760 1.1e-08 63.9 67 52.2
Glyma.03G263400 Glycine max HOM05D005200 ORTHO05D005760 1.1e-08 63.9 70 44.3
HPP92_005865 Vanilla planifolia HOM05D005200 ORTHO05D005760 1.1e-08 63.9 46 65.2
ATR0099G034 Amborella trichopoda HOM05D005200 ORTHO05D005760 1.4e-08 63.5 70 44.3
arahy.Tifrunner.gnm1.ann1.KXG0W2 Arachis hypogaea HOM05D005200 ORTHO05D005760 1.4e-08 63.5 67 52.2
BcaC05g29096 Brassica carinata HOM05D005200 ORTHO05D005760 1.4e-08 63.5 62 50.0
C05p53060 Brassica napus HOM05D005200 ORTHO05D005760 1.4e-08 63.5 62 50.0
BolC5t33987H Brassica oleracea HOM05D005200 ORTHO05D005760 1.4e-08 63.5 62 50.0
SGA_v2.0_scaffold71G23919 Striga asiatica HOM05D005200 ORTHO05D005760 1.4e-08 63.5 34 76.5
DCAR_007659 Daucus carota HOM05D005200 ORTHO05D005760 2.4e-08 62.8 71 39.4
VMungo1309G1714 Vigna mungo HOM05D005200 ORTHO05D005760 2.4e-08 62.8 109 33.9
Os06g0193300 Oryza sativa ssp. japonica HOM05D005200 ORTHO05D005760 7.0e-08 61.2 66 45.5
Ah.08g217360 Amaranthus hybridus HOM05D005200 ORTHO05D005760 9.1e-08 60.8 62 46.8
AagrBONN_evm.TU.Sc2ySwM_228.2768 Anthoceros agrestis HOM05D005200 ORTHO05D005760 9.1e-08 60.8 117 43.6
Lj3g0024707 Lotus japonicus HOM05D005200 ORTHO05D005760 9.1e-08 60.8 78 41.0
Phvul.009G261901 Phaseolus vulgaris HOM05D005200 ORTHO05D005760 9.1e-08 60.8 59 50.8
MBI19_g32869_MAGBIO Magnolia biondii HOM05D005200 ORTHO05D005760 1.2e-07 60.5 31 77.4
Glyma.07G045700 Glycine max HOM05D005200 ORTHO05D005760 2.6e-07 59.3 71 39.4
Zm00001eb278460 Zea mays HOM05D005200 ORTHO05D005760 2.6e-07 59.3 41 61.0
Os10g0390701 Oryza sativa ssp. japonica HOM05D005200 ORTHO05D005760 7.7e-07 57.8 56 46.4
Aqoxy7G04178 Aquilegia oxysepala HOM05D005200 ORTHO05D005760 1.3e-06 57.0 64 37.5
Pp3c19_6810 Physcomitrium patens HOM05D023101 ORTHO05D005760 5.0e-06 55.1 47 48.9
SMO364G0157 Selaginella moellendorffii HOM05D003349 ORTHO05D003898 5.0e-06 55.1 34 67.6
CsaV3_3G030990 Cucumis sativus L. HOM05D005200 ORTHO05D005760 6.5e-06 54.7 37 67.6
Zm00001eb203790 Zea mays HOM05D005200 ORTHO05D005760 8.5e-06 54.3 46 45.7


User provided reference genes

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