Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen12g023080 Solanum pennellii HOM05D006741 ORTHO05D008434 2.0e-284 981.9 524 100.0
Solyc12g044620.2 Solanum lycopersicum HOM05D006741 ORTHO05D008434 5.3e-274 947.2 524 96.9
PGSC0003DMG400026441 Solanum tuberosum HOM05D006741 ORTHO05D008434 1.9e-234 815.8 492 90.7
Nitab4.5_0001172g0120 Nicotiana tabacum HOM05D006741 ORTHO05D008434 2.3e-184 649.4 573 64.9
Nitab4.5_0004241g0050 Nicotiana tabacum HOM05D006741 ORTHO05D008434 8.5e-179 630.9 528 68.2
Peaxi162Scf00177g00125 Petunia axillaris HOM05D006741 ORTHO05D008434 3.7e-142 509.2 446 64.3
CSS0005978 Camellia sinensis var. sinensis HOM05D006741 ORTHO05D008434 6.2e-97 359.0 541 44.9
CSS0034583 Camellia sinensis var. sinensis HOM05D006741 ORTHO05D008434 2.4e-96 357.1 541 44.7
Oeu017120.1 Olea europaea HOM05D006741 ORTHO05D008434 3.2e-93 346.7 551 41.2
Actinidia09006 Actinidia chinensis HOM05D006741 ORTHO05D008434 9.6e-90 335.1 545 41.7
Rhsim08G0227700 Rhododendron simsii HOM05D006741 ORTHO05D008434 2.8e-89 333.6 561 42.1
Dinv30435 Davidia involucrata HOM05D006741 ORTHO05D008434 1.2e-87 328.2 525 43.0
Cc04_g02540 Coffea canephora HOM05D006741 ORTHO05D008434 5.1e-83 312.8 554 41.3
Cfa003646 Carpinus fangiana HOM05D006741 ORTHO05D008434 6.7e-83 312.4 551 40.1
Actinidia39136 Actinidia chinensis HOM05D006741 ORTHO05D008434 8.7e-83 312.0 538 41.1
TAR636G1866 Trochodendron aralioides HOM05D006741 ORTHO05D008434 1.3e-81 308.1 561 39.2
CiPaw.01G231300 Carya illinoinensis HOM05D006741 ORTHO05D008434 5.3e-80 302.8 549 38.8
Migut.I00896 Erythranthe guttata HOM05D006741 ORTHO05D008434 1.5e-79 301.2 523 39.0
QL05p019947 Quercus lobata HOM05D006741 ORTHO05D008434 3.4e-79 300.1 564 38.7
Duzib192G0766 Durio zibethinus HOM05D006741 ORTHO05D008434 2.9e-78 297.0 546 39.0
DCAR_023081 Daucus carota HOM05D006741 ORTHO05D008434 5.5e-77 292.7 553 38.7
Duzib235G1269 Durio zibethinus HOM05D006741 ORTHO05D008434 5.5e-77 292.7 549 39.7
vmacro17014 Vaccinium macrocarpon HOM05D006741 ORTHO05D008434 9.3e-77 292.0 500 40.2
Thecc.06G100200 Theobroma cacao HOM05D006741 ORTHO05D008434 1.9e-74 284.3 547 38.0
MSTRG.11026 Avicennia marina HOM05D006741 ORTHO05D008434 2.5e-74 283.9 543 37.8
COL.COLO4_30514 Corchorus olitorius HOM05D006741 ORTHO05D008434 2.5e-74 283.9 552 38.4
Manes.11G033400 Manihot esculenta HOM05D006741 ORTHO05D008434 8.2e-73 278.9 572 37.1
Cpa.g.sc25.10 Carica papaya HOM05D006741 ORTHO05D008434 1.4e-72 278.1 536 38.4
Gohir.A06G189500 Gossypium hirsutum HOM05D006741 ORTHO05D008434 1.8e-72 277.7 539 38.8
SGA_v2.0_scaffold69G23318 Striga asiatica HOM05D006741 ORTHO05D008434 4.1e-72 276.6 549 37.7
Potri.013G040800 Populus trichocarpa HOM05D006741 ORTHO05D008434 6.9e-72 275.8 567 36.5
Haze_15849 Corylus avellana HOM05D006741 ORTHO05D008434 2.0e-71 274.2 482 40.2
Gohir.D06G197900 Gossypium hirsutum HOM05D006741 ORTHO05D008434 3.4e-71 273.5 538 38.7
Gorai.010G230700 Gossypium raimondii HOM05D006741 ORTHO05D008434 4.5e-71 273.1 538 38.5
Potri.005G053300 Populus trichocarpa HOM05D006741 ORTHO05D008434 1.1e-69 268.5 561 36.9
Sed0020930 Sechium edule HOM05D006741 ORTHO05D008434 1.9e-69 267.7 521 38.6
MELO3C013001.2 Cucumis melo HOM05D006741 ORTHO05D008434 5.5e-69 266.2 534 38.0
Sabra05G0046800 Salix brachista HOM05D006741 ORTHO05D008434 5.5e-69 266.2 562 36.8
PSO210G4778 Papaver somniferum HOM05D006741 ORTHO05D008434 4.6e-68 263.1 553 35.1
PSO210G6928 Papaver somniferum HOM05D006741 ORTHO05D008434 6.1e-68 262.7 552 35.0
Nn6g35322 Nelumbo nucifera HOM05D006741 ORTHO05D008434 1.4e-67 261.5 561 37.8
TWI75G1374 Tripterygium wilfordii HOM05D006741 ORTHO05D008434 6.7e-67 259.2 548 37.6
Atru.chr1.3525 Acer truncatum HOM05D006741 ORTHO05D008434 4.3e-66 256.5 539 37.5
ClCG07G013320 Citrullus lanatus HOM05D006741 ORTHO05D008434 2.2e-65 254.2 541 40.1
Sabra13G0037700 Salix brachista HOM05D006741 ORTHO05D008434 4.8e-65 253.1 541 36.4
CsaV3_3G023590 Cucumis sativus L. HOM05D006741 ORTHO05D008434 1.4e-64 251.5 477 39.0
PGR102G3207 Punica granatum HOM05D006741 ORTHO05D008434 1.4e-64 251.5 563 33.9
Lalb_Chr01g0013161 Lupinus albus HOM05D006741 ORTHO05D008434 3.4e-63 246.9 547 37.1
Sc12g0010170 Simmondsia chinensis HOM05D006741 ORTHO05D008434 5.0e-62 243.0 571 34.7
Eucgr.J02937 Eucalyptus grandis HOM05D006741 ORTHO05D008434 1.1e-61 241.9 475 37.9
MD17G1183900 Malus domestica HOM05D006741 ORTHO05D008434 1.9e-61 241.1 558 34.2
Lj9A513G60 Lonicera japonica HOM05D006741 ORTHO05D008434 4.2e-61 240.0 438 42.5
Hund28870 Selenicereus undatus HOM05D006741 ORTHO05D008434 9.4e-61 238.8 553 34.9
CANSAT56G2677 Cannabis sativa HOM05D006741 ORTHO05D008434 3.0e-59 233.8 571 33.8
GSVIVG01016979001 Vitis vinifera HOM05D006741 ORTHO05D008434 3.0e-59 233.8 535 36.6
Hund28829 Selenicereus undatus HOM05D006741 ORTHO05D008434 5.1e-59 233.0 553 34.4
arahy.Tifrunner.gnm1.ann1.X4D5DL Arachis hypogaea HOM05D006741 ORTHO05D008434 1.1e-58 231.9 489 35.6
arahy.Tifrunner.gnm1.ann1.CS2PXA Arachis hypogaea HOM05D006741 ORTHO05D008434 2.0e-58 231.1 489 36.0
Lj3g0008384 Lotus japonicus HOM05D006741 ORTHO05D008434 2.6e-58 230.7 531 35.8
Prupe.3G058900 Prunus persica HOM05D006741 ORTHO05D008434 2.6e-58 230.7 560 34.8
MD09G1202700 Malus domestica HOM05D006741 ORTHO05D008434 4.4e-58 229.9 562 33.6
Aqoxy7G03978 Aquilegia oxysepala HOM05D006741 ORTHO05D008434 5.7e-58 229.6 562 33.8
MBI01_g10133_MAGBIO Magnolia biondii HOM05D006741 ORTHO05D008434 9.7e-58 228.8 535 35.7
Aa31LG9G10130 Aethionema arabicum HOM05D006741 ORTHO05D008434 1.8e-56 224.6 496 35.3
Lsat_1_v5_gn_4_97420 Lactuca sativa HOM05D006741 ORTHO05D008434 5.9e-55 219.5 524 32.6
THA.LOC104806335 Tarenaya hassleriana HOM05D006741 ORTHO05D008434 3.8e-54 216.9 492 34.6
HanXRQChr09g0276261 Helianthus annuus HOM05D006741 ORTHO05D008434 4.2e-53 213.4 527 35.3
Medtr8g014490 Medicago truncatula HOM05D006741 ORTHO05D008434 5.5e-53 213.0 503 35.2
ECA232G4726 Erigeron canadensis HOM05D006741 ORTHO05D008434 1.2e-52 211.8 510 33.1
Ca_23263_v3 Cicer arietinum L. HOM05D006741 ORTHO05D008434 6.7e-51 206.1 521 35.5
Ca_23272_v3 Cicer arietinum L. HOM05D006741 ORTHO05D008434 6.7e-51 206.1 521 35.5
ClCG00G003340 Citrullus lanatus HOM05D006741 ORTHO05D008434 8.8e-51 205.7 424 40.8
Ah.01g005790 Amaranthus hybridus HOM05D006741 ORTHO05D008434 1.1e-50 205.3 541 32.2
FvH4_6g32410 Fragaria vesca HOM05D006741 ORTHO05D008434 1.5e-50 204.9 535 33.1
FAN14G5382 Fragaria x ananassa HOM05D006741 ORTHO05D008434 3.3e-50 203.8 535 33.1
RcHm_v2.0_Chr2g0140551 Rosa chinensis HOM05D006741 ORTHO05D008434 3.3e-50 203.8 544 33.6
FAN05G1069 Fragaria x ananassa HOM05D006741 ORTHO05D008434 4.4e-50 203.4 542 32.7
Ciclev10027417m.g Citrus clementina HOM05D006741 ORTHO05D008434 5.7e-50 203.0 520 32.9
Hma1.2p1_0430F.1_g151390 Hydrangea macrophylla HOM05D006741 ORTHO05D008434 1.8e-48 198.0 509 33.2
TPR.G26946 Trifolium pratense HOM05D006741 ORTHO05D008434 2.6e-47 194.1 553 33.3
AT4G12540 Arabidopsis thaliana HOM05D006741 ORTHO05D008434 1.3e-46 191.8 498 34.1
AL6G47480 Arabidopsis lyrata HOM05D006741 ORTHO05D008434 3.8e-46 190.3 490 34.7
Carub.0006s3171 Capsella rubella HOM05D006741 ORTHO05D008434 5.0e-46 189.9 486 33.5
CARHR253650 Cardamine hirsuta HOM05D006741 ORTHO05D008434 6.5e-46 189.5 478 32.2
AUR62031924 Chenopodium quinoa HOM05D006741 ORTHO05D008434 6.5e-46 189.5 562 31.9
FAN02G4526 Fragaria x ananassa HOM05D006741 ORTHO05D008434 8.5e-46 189.1 538 32.0
Psat4g197400 Pisum sativum HOM05D006741 ORTHO05D008434 1.5e-45 188.3 496 33.1
VMungo0331G0583 Vigna mungo HOM05D006741 ORTHO05D008434 1.9e-45 188.0 496 33.5
Glyma.08G200900 Glycine max HOM05D006741 ORTHO05D008434 5.5e-45 186.4 502 32.3
EL10Ac3g05317 Beta vulgaris HOM05D006741 ORTHO05D008434 1.2e-44 185.3 554 31.0
Thhalv10028639m.g Eutrema salsugineum HOM05D006741 ORTHO05D008434 1.6e-44 184.9 487 33.5
Dinv37976 Davidia involucrata HOM05D006741 ORTHO05D008434 2.1e-44 184.5 219 51.1
Phvul.010G145200 Phaseolus vulgaris HOM05D006741 ORTHO05D008434 4.7e-44 183.3 495 33.3
Sp6g04980 Schrenkiella parvula HOM05D006741 ORTHO05D008434 8.0e-44 182.6 503 32.0
SpUn0055_0020 Schrenkiella parvula HOM05D006741 ORTHO05D008434 3.0e-43 180.6 503 32.0
A09p26830 Brassica napus HOM05D006741 ORTHO05D008434 2.8e-41 174.1 483 33.3
BcaC04g21238 Brassica carinata HOM05D006741 ORTHO05D008434 1.1e-40 172.2 485 32.8
C09p34000 Brassica napus HOM05D006741 ORTHO05D008434 1.1e-40 172.2 485 32.8
BolC9t56238H Brassica oleracea HOM05D006741 ORTHO05D008434 1.1e-40 172.2 485 32.8
BraA09t38254Z Brassica rapa HOM05D006741 ORTHO05D008434 1.1e-40 172.2 489 33.1
Nn8g39070 Nelumbo nucifera HOM05D006741 ORTHO05D008434 7.0e-40 169.5 410 34.1
Glyma.07G015400 Glycine max HOM05D006741 ORTHO05D008434 5.9e-39 166.4 482 31.3
CDE02G1085 Ceratophyllum demersum HOM05D006741 ORTHO05D008434 3.1e-32 144.1 552 28.8
FAN09G4229 Fragaria x ananassa HOM05D002451 ORTHO05D005601 3.1e-32 144.1 492 30.5
ATR0705G093 Amborella trichopoda HOM05D006741 ORTHO05D008434 9.5e-29 132.5 432 35.4
TAR624G0518 Trochodendron aralioides HOM05D006741 ORTHO05D008434 2.1e-28 131.3 195 41.5
Os05g0532500 Oryza sativa ssp. japonica HOM05D006741 ORTHO05D008434 4.4e-26 123.6 594 25.4
Cpa.g.sc25.28 Carica papaya HOM05D006741 ORTHO05D008434 2.4e-24 117.9 227 37.0
unitig_748.g7440 Utricularia gibba HOM05D006741 ORTHO05D008434 1.6e-20 105.1 130 44.6
Zm00001eb353790 Zea mays HOM05D006741 ORTHO05D008434 1.2e-18 99.0 366 26.8
unitig_748.g7441 Utricularia gibba HOM05D006741 ORTHO05D008434 3.7e-17 94.0 209 37.8
CDE04G0136 Ceratophyllum demersum HOM05D006741 ORTHO05D008434 2.4e-16 91.3 225 31.1
BcaC01g04588 Brassica carinata HOM05D006741 ORTHO05D008434 1.8e-11 75.1 139 38.1
CDE04G1568 Ceratophyllum demersum HOM05D006741 ORTHO05D008434 1.0e-06 59.3 81 44.4
Actinidia32099 Actinidia chinensis HOM05D006741 ORTHO05D008434 2.3e-06 58.2 159 30.8


User provided reference genes

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