Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc12g044380.3 Solanum lycopersicum HOM05D006052 ORTHO05D007319 4.3e-68 261.2 128 100.0
Sopen12g022650 Solanum pennellii HOM05D006052 ORTHO05D007319 4.3e-68 261.2 128 100.0
Nitab4.5_0003039g0060 Nicotiana tabacum HOM05D006052 ORTHO05D007319 2.1e-51 205.7 105 94.3
PGSC0003DMG400026453 Solanum tuberosum HOM05D006052 ORTHO05D007319 3.4e-49 198.4 95 100.0
Nitab4.5_0007758g0100 Nicotiana tabacum HOM05D006052 ORTHO05D007319 6.3e-43 177.6 91 90.1
Peaxi162Scf00038g00824 Petunia axillaris HOM05D006052 ORTHO05D007319 8.2e-43 177.2 91 90.1
Solyc03g120820.4 Solanum lycopersicum HOM05D006052 ORTHO05D007319 1.1e-42 176.8 91 91.2
PGSC0003DMG402002538 Solanum tuberosum HOM05D006052 ORTHO05D007319 1.1e-42 176.8 91 91.2
CSS0026597 Camellia sinensis var. sinensis HOM05D006052 ORTHO05D007319 4.5e-41 171.4 93 86.0
CAN.G203.53 Capsicum annuum HOM05D006052 ORTHO05D007319 2.2e-40 169.1 88 89.8
CsaV3_7G033550 Cucumis sativus L. HOM05D006052 ORTHO05D007319 1.4e-39 166.4 94 81.9
ClCG09G001790 Citrullus lanatus HOM05D006052 ORTHO05D007319 3.2e-39 165.2 108 74.1
CSS0014721 Camellia sinensis var. sinensis HOM05D006052 ORTHO05D007319 7.2e-39 164.1 91 83.5
CiPaw.01G233600 Carya illinoinensis HOM05D006052 ORTHO05D007319 9.4e-39 163.7 94 81.9
Actinidia39148 Actinidia chinensis HOM05D006052 ORTHO05D007319 1.2e-38 163.3 93 82.8
Dinv32171 Davidia involucrata HOM05D006052 ORTHO05D007319 1.2e-38 163.3 91 83.5
Dinv37999 Davidia involucrata HOM05D006052 ORTHO05D007319 1.2e-38 163.3 91 83.5
CANSAT56G3932 Cannabis sativa HOM05D006052 ORTHO05D007319 1.6e-38 162.9 91 85.7
MBI04_g27065_MAGBIO Magnolia biondii HOM05D006052 ORTHO05D007319 1.6e-38 162.9 90 82.2
Manes.04G131832 Manihot esculenta HOM05D006052 ORTHO05D007319 2.7e-38 162.2 94 79.8
Thecc.06G096200 Theobroma cacao HOM05D006052 ORTHO05D007319 7.9e-38 160.6 94 79.8
TAR626G0898 Trochodendron aralioides HOM05D006052 ORTHO05D007319 7.9e-38 160.6 94 79.8
TAR636G2101 Trochodendron aralioides HOM05D006052 ORTHO05D007319 7.9e-38 160.6 94 79.8
Haze_16332 Corylus avellana HOM05D006052 ORTHO05D007319 1.0e-37 160.2 94 80.9
Cc04_g02780 Coffea canephora HOM05D006052 ORTHO05D007319 1.8e-37 159.5 86 86.0
ECA232G3158 Erigeron canadensis HOM05D006052 ORTHO05D007319 3.9e-37 158.3 92 80.4
DCAR_026339 Daucus carota HOM05D006052 ORTHO05D007319 5.1e-37 157.9 91 81.3
Gohir.A05G128200 Gossypium hirsutum HOM05D006052 ORTHO05D007319 5.1e-37 157.9 88 81.8
vmacro16981 Vaccinium macrocarpon HOM05D006052 ORTHO05D007319 5.1e-37 157.9 90 82.2
FAN05G1983 Fragaria x ananassa HOM05D002582 ORTHO05D002781 6.7e-37 157.5 95 77.9
Hma1.2p1_1689F.1_g297700 Hydrangea macrophylla HOM05D006052 ORTHO05D007319 1.1e-36 156.8 88 83.0
Nn3g18169 Nelumbo nucifera HOM05D006052 ORTHO05D007319 1.1e-36 156.8 94 75.5
PSO566G0324 Papaver somniferum HOM05D006052 ORTHO05D007319 1.1e-36 156.8 90 80.0
Potri.001G187200 Populus trichocarpa HOM05D006052 ORTHO05D007319 1.5e-36 156.4 91 80.2
FAN02G3299 Fragaria x ananassa HOM05D006052 ORTHO05D007319 2.0e-36 156.0 92 79.3
Gohir.D05G132700 Gossypium hirsutum HOM05D006052 ORTHO05D007319 2.0e-36 156.0 88 80.7
Gorai.009G136400 Gossypium raimondii HOM05D006052 ORTHO05D007319 2.0e-36 156.0 88 80.7
FAN14G5158 Fragaria x ananassa HOM05D002582 ORTHO05D002781 2.5e-36 155.6 94 77.7
Eucgr.F03060 Eucalyptus grandis HOM05D006052 ORTHO05D007319 3.3e-36 155.2 90 81.1
PGR102G0387 Punica granatum HOM05D006052 ORTHO05D007319 3.3e-36 155.2 94 78.7
MD17G1187600 Malus domestica HOM05D006052 ORTHO05D007319 4.3e-36 154.8 94 76.6
Prupe.3G063000 Prunus persica HOM05D006052 ORTHO05D007319 4.3e-36 154.8 94 77.7
HanXRQChr16g0501261 Helianthus annuus HOM05D006052 ORTHO05D007319 5.7e-36 154.5 93 77.4
Migut.I00924 Erythranthe guttata HOM05D006052 ORTHO05D007319 1.3e-35 153.3 93 75.3
HanXRQChr02g0032361 Helianthus annuus HOM05D006052 ORTHO05D007319 1.3e-35 153.3 91 79.1
PSO782G5494 Papaver somniferum HOM05D006052 ORTHO05D007319 1.3e-35 153.3 90 78.9
Rhsim12G0201800 Rhododendron simsii HOM05D006052 ORTHO05D007319 2.8e-35 152.1 112 67.9
Sed0023726 Sechium edule HOM05D006052 ORTHO05D007319 2.8e-35 152.1 94 74.5
TWI18G1030 Tripterygium wilfordii HOM05D006052 ORTHO05D007319 4.8e-35 151.4 91 78.0
Ah.01g021850 Amaranthus hybridus HOM05D007180 ORTHO05D009028 6.3e-35 151.0 85 80.0
MSTRG.22652 Avicennia marina HOM05D006052 ORTHO05D007319 6.3e-35 151.0 96 75.0
Lj3g0026702 Lotus japonicus HOM05D006052 ORTHO05D007319 6.3e-35 151.0 87 80.5
Ciclev10026826m.g Citrus clementina HOM05D006052 ORTHO05D007319 8.2e-35 150.6 91 78.0
Eucgr.E01716 Eucalyptus grandis HOM05D006052 ORTHO05D007319 8.2e-35 150.6 86 80.2
arahy.Tifrunner.gnm1.ann1.69I5GX Arachis hypogaea HOM05D006052 ORTHO05D007319 1.1e-34 150.2 87 80.5
arahy.Tifrunner.gnm1.ann1.NZ5FDW Arachis hypogaea HOM05D006052 ORTHO05D007319 1.1e-34 150.2 87 80.5
arahy.Tifrunner.gnm1.ann1.S0BGA2 Arachis hypogaea HOM05D006052 ORTHO05D007319 1.1e-34 150.2 87 80.5
Sc15g0001990 Simmondsia chinensis HOM05D006052 ORTHO05D007319 1.1e-34 150.2 88 78.4
EL10Ac9g22109 Beta vulgaris HOM05D006052 ORTHO05D007319 1.4e-34 149.8 103 70.9
Ca_11523_v3 Cicer arietinum L. HOM05D007180 ORTHO05D009028 1.4e-34 149.8 87 80.5
TPR.G14815 Trifolium pratense HOM05D006052 ORTHO05D007319 1.8e-34 149.4 87 80.5
Thhalv10019223m.g Eutrema salsugineum HOM05D006052 ORTHO05D007319 3.1e-34 148.7 100 70.0
RcHm_v2.0_Chr2g0139621 Rosa chinensis HOM05D006052 ORTHO05D007319 4.1e-34 148.3 94 74.5
Medtr3g112340 Medicago truncatula HOM05D006052 ORTHO05D007319 5.3e-34 147.9 88 79.5
Medtr8g013760 Medicago truncatula HOM05D006052 ORTHO05D007319 5.3e-34 147.9 87 80.5
AL2G28930 Arabidopsis lyrata HOM05D006052 ORTHO05D007319 6.9e-34 147.5 99 72.7
AL1G38650 Arabidopsis lyrata HOM05D006052 ORTHO05D007319 1.2e-33 146.7 79 83.5
AT1G66590 Arabidopsis thaliana HOM05D006052 ORTHO05D007319 1.2e-33 146.7 91 72.5
AT1G69750 Arabidopsis thaliana HOM05D006052 ORTHO05D007319 1.2e-33 146.7 91 72.5
Sp5g24870 Schrenkiella parvula HOM05D006052 ORTHO05D007319 1.2e-33 146.7 79 83.5
Carub.0002s1643 Capsella rubella HOM05D006052 ORTHO05D007319 1.5e-33 146.4 94 69.1
Glyma.07G017500 Glycine max HOM05D006052 ORTHO05D007319 1.5e-33 146.4 86 79.1
Phvul.010G146800 Phaseolus vulgaris HOM05D006052 ORTHO05D007319 1.5e-33 146.4 86 77.9
TWI12G0943 Tripterygium wilfordii HOM05D006052 ORTHO05D007319 1.5e-33 146.4 91 73.6
BcaB03g15501 Brassica carinata HOM05D006052 ORTHO05D007319 2.0e-33 146.0 79 83.5
Lalb_Chr01g0013101 Lupinus albus HOM05D006052 ORTHO05D007319 2.0e-33 146.0 97 72.2
Lalb_Chr01g0013121 Lupinus albus HOM05D006052 ORTHO05D007319 2.0e-33 146.0 97 72.2
BcaB03g14752 Brassica carinata HOM05D006052 ORTHO05D007319 3.4e-33 145.2 94 70.2
unitig_748.g8097 Utricularia gibba HOM05D003052 ORTHO05D007319 4.5e-33 144.8 92 71.7
CDE02G2125 Ceratophyllum demersum HOM05D006052 ORTHO05D007319 5.9e-33 144.4 91 73.6
CDE08G0656 Ceratophyllum demersum HOM05D006052 ORTHO05D007319 5.9e-33 144.4 88 76.1
SGA_v2.0_scaffold69G23334 Striga asiatica HOM05D006052 ORTHO05D007319 7.7e-33 144.1 88 75.0
THA.LOC104800715 Tarenaya hassleriana HOM05D006052 ORTHO05D007319 7.7e-33 144.1 89 75.3
HPP92_024167 Vanilla planifolia HOM05D006052 ORTHO05D007319 7.7e-33 144.1 81 81.5
VMungo0331G0139 Vigna mungo HOM05D007180 ORTHO05D009028 7.7e-33 144.1 87 75.9
VMungo1309G2952 Vigna mungo HOM05D006052 ORTHO05D007319 7.7e-33 144.1 96 70.8
Zm00001eb002070 Zea mays HOM05D006052 ORTHO05D007319 7.7e-33 144.1 94 74.5
Glyma.08G202700 Glycine max HOM05D006052 ORTHO05D007319 1.0e-32 143.7 86 77.9
Zm00001eb295530 Zea mays HOM05D006052 ORTHO05D007319 1.0e-32 143.7 91 74.7
A07p36160 Brassica napus HOM05D006052 ORTHO05D007319 1.3e-32 143.3 92 70.7
C06p43560 Brassica napus HOM05D006052 ORTHO05D007319 1.3e-32 143.3 92 70.7
BolC6t39428H Brassica oleracea HOM05D006052 ORTHO05D007319 1.3e-32 143.3 92 70.7
BraA07t31192Z Brassica rapa HOM05D006052 ORTHO05D007319 1.3e-32 143.3 92 70.7
CARHR062820 Cardamine hirsuta HOM05D006052 ORTHO05D007319 1.3e-32 143.3 91 70.3
AUR62031876 Chenopodium quinoa HOM05D006052 ORTHO05D007319 2.2e-32 142.5 88 75.0
GSVIVG01017036001 Vitis vinifera HOM05D006052 ORTHO05D007319 2.9e-32 142.1 88 75.0
AUR62022170 Chenopodium quinoa HOM05D006052 ORTHO05D007319 8.5e-32 140.6 88 73.9
Aa31LG7G8230 Aethionema arabicum HOM05D006052 ORTHO05D007319 1.4e-31 139.8 88 72.7
BcaC03g15114 Brassica carinata HOM05D006052 ORTHO05D007319 1.9e-31 139.4 79 78.5
BolC2t08748H Brassica oleracea HOM05D006052 ORTHO05D007319 1.9e-31 139.4 79 78.5
QL05p021035 Quercus lobata HOM05D006052 ORTHO05D007319 1.9e-31 139.4 114 61.4
BraA07t30774Z Brassica rapa HOM05D006052 ORTHO05D007319 1.6e-30 136.3 83 74.7
A07p31390 Brassica napus HOM05D006052 ORTHO05D007319 7.9e-30 134.0 75 78.7
Nitab4.5_0001315g0290 Nicotiana tabacum HOM05D006052 ORTHO05D007319 1.0e-29 133.7 79 79.7
QL05p020889 Quercus lobata HOM05D006052 ORTHO05D007319 2.3e-29 132.5 68 88.2
C02p26750 Brassica napus HOM05D006052 ORTHO05D007319 1.1e-28 130.2 86 68.6
Oeu063940.2 Olea europaea HOM05D004680 ORTHO05D007319 2.6e-28 129.0 65 86.2
SalBow6G3458 Salvia bowleyana HOM05D006052 ORTHO05D007319 2.8e-27 125.6 66 83.3
Psat4g197560 Pisum sativum HOM05D006052 ORTHO05D007319 4.8e-27 124.8 66 84.8
arahy.Tifrunner.gnm1.ann1.Q44M57 Arachis hypogaea HOM05D006052 ORTHO05D007319 1.1e-26 123.6 66 81.8
SMO271G0187 Selaginella moellendorffii HOM05D006052 ORTHO05D007319 1.4e-26 123.2 82 65.9
Mapoly0075s0024 Marchantia polymorpha HOM05D006052 ORTHO05D007319 2.0e-25 119.4 89 61.8
SEGI_14426 Sequoiadendron giganteum HOM05D006052 ORTHO05D007319 1.3e-24 116.7 73 74.0
Nitab4.5_0008606g0020 Nicotiana tabacum HOM05D006052 ORTHO05D007319 1.7e-24 116.3 53 96.2
MELO3C024266.2 Cucumis melo HOM05D006052 ORTHO05D007319 3.2e-23 112.1 67 77.6
RcHm_v2.0_Chr5g0082611 Rosa chinensis HOM05D006052 ORTHO05D007319 4.2e-23 111.7 63 77.8
Pp3c14_6840 Physcomitrium patens HOM05D006052 ORTHO05D007319 9.4e-23 110.5 74 66.2
AagrBONN_evm.TU.Sc2ySwM_344.4288 Anthoceros agrestis HOM05D006052 ORTHO05D007319 8.0e-22 107.5 86 55.8
MD09G1206900 Malus domestica HOM05D006052 ORTHO05D007319 1.0e-21 107.1 91 60.4
RcHm_v2.0_Chr5g0082321 Rosa chinensis HOM05D006052 ORTHO05D007319 1.4e-21 106.7 63 74.6
Atru.ctg114.13 Acer truncatum HOM05D006052 ORTHO05D007319 4.0e-21 105.1 66 72.7
CBR_g27938 Chara braunii HOM05D006052 ORTHO05D007319 6.7e-21 104.4 91 52.7
RcHm_v2.0_Chr4g0404221 Rosa chinensis HOM05D006052 ORTHO05D007319 6.7e-21 104.4 62 74.2
BraA02t06670Z Brassica rapa HOM05D006052 ORTHO05D007319 1.5e-20 103.2 63 71.4
A02p16100 Brassica napus HOM05D006052 ORTHO05D007319 4.4e-20 101.7 64 70.3
Lsat_1_v5_gn_1_34740 Lactuca sativa HOM05D006052 ORTHO05D007319 2.8e-19 99.0 67 68.7
Manes.11G036000 Manihot esculenta HOM05D006052 ORTHO05D007319 3.1e-18 95.5 59 72.9
vmacro16174 Vaccinium macrocarpon HOM05D006052 ORTHO05D007319 7.7e-17 90.9 59 72.9
Sp2g00570 Schrenkiella parvula HOM05D006052 ORTHO05D007319 4.2e-15 85.1 61 65.6
MCO15G075 Micromonas commoda HOM05D006052 ORTHO05D007319 4.7e-14 81.6 77 50.6
Nn2g12137 Nelumbo nucifera HOM05D006052 ORTHO05D007319 1.0e-13 80.5 50 70.0
Cre10.g454550 Chlamydomonas reinhardtii HOM05D006052 ORTHO05D007319 3.0e-13 79.0 73 52.1
PRCOL_00001792 Prasinoderma coloniale HOM05D006052 ORTHO05D007319 1.2e-12 77.0 79 48.1
TPR.G20406 Trifolium pratense HOM05D006052 ORTHO05D007319 7.5e-12 74.3 33 93.9
Cfa026674 Carpinus fangiana HOM05D006052 ORTHO05D007319 3.7e-11 72.0 80 48.8
CBR_g29697 Chara braunii HOM05D035488 ORTHO05D007319 1.5e-07 60.1 56 44.6


User provided reference genes

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