Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc12g044280.2 Solanum lycopersicum HOM05D003870 ORTHO05D004567 1.9e-72 275.8 143 100.0
Sopen12g022520 Solanum pennellii HOM05D003870 ORTHO05D004567 1.9e-72 275.8 143 100.0
PGSC0003DMG400007571 Solanum tuberosum HOM05D003870 ORTHO05D004567 6.7e-70 267.3 144 97.2
Nitab4.5_0002859g0140 Nicotiana tabacum HOM05D003870 ORTHO05D004567 2.8e-68 261.9 146 93.8
Peaxi162Scf00015g00032 Petunia axillaris HOM05D003870 ORTHO05D004567 3.1e-67 258.5 146 92.5
PGSC0003DMG400002626 Solanum tuberosum HOM05D003870 ORTHO05D004567 4.1e-67 258.1 146 92.5
Nitab4.5_0018837g0020 Nicotiana tabacum HOM05D003870 ORTHO05D004567 5.3e-67 257.7 146 91.8
Nitab4.5_0001315g0130 Nicotiana tabacum HOM05D003870 ORTHO05D004567 6.9e-67 257.3 146 91.8
Solyc06g066640.3 Solanum lycopersicum HOM05D003870 ORTHO05D004567 9.1e-67 256.9 146 91.8
PGSC0003DMG400016504 Solanum tuberosum HOM05D003870 ORTHO05D004567 1.5e-66 256.1 146 91.1
CAN.G438.27 Capsicum annuum HOM05D003870 ORTHO05D004567 2.0e-66 255.8 146 91.1
Solyc03g120640.3 Solanum lycopersicum HOM05D003870 ORTHO05D004567 2.0e-66 255.8 146 91.8
Nitab4.5_0003418g0030 Nicotiana tabacum HOM05D003870 ORTHO05D004567 2.6e-66 255.4 146 91.1
Nitab4.5_0000351g0060 Nicotiana tabacum HOM05D003870 ORTHO05D004567 4.5e-66 254.6 146 91.1
Sopen06g024910 Solanum pennellii HOM05D003870 ORTHO05D004567 5.9e-66 254.2 146 90.4
CAN.G1152.5 Capsicum annuum HOM05D003870 ORTHO05D004567 7.7e-66 253.8 146 89.7
Hma1.2p1_1195F.1_g265780 Hydrangea macrophylla HOM05D003870 ORTHO05D004567 1.6e-63 246.1 146 88.4
Hma1.2p1_3147F.1_g333153 Hydrangea macrophylla HOM05D003870 ORTHO05D004567 1.6e-63 246.1 146 88.4
PGR102G1204 Punica granatum HOM05D003870 ORTHO05D004567 6.1e-63 244.2 145 87.6
Peaxi162Scf00034g00513 Petunia axillaris HOM05D003870 ORTHO05D004567 3.0e-62 241.9 143 89.5
Sabra03G0026800 Salix brachista HOM05D003870 ORTHO05D004567 3.0e-62 241.9 145 86.2
Glyma.07G019700 Glycine max HOM05D003870 ORTHO05D004567 3.9e-62 241.5 145 87.6
Glyma.08G204800 Glycine max HOM05D003870 ORTHO05D004567 5.2e-62 241.1 145 87.6
Phvul.010G148800 Phaseolus vulgaris HOM05D003870 ORTHO05D004567 6.7e-62 240.7 145 86.9
arahy.Tifrunner.gnm1.ann1.71HCYD Arachis hypogaea HOM05D003870 ORTHO05D004567 8.8e-62 240.4 145 86.9
arahy.Tifrunner.gnm1.ann1.YBSA05 Arachis hypogaea HOM05D003870 ORTHO05D004567 8.8e-62 240.4 145 86.9
Dinv38024 Davidia involucrata HOM05D003870 ORTHO05D004567 1.1e-61 240.0 145 85.5
Potri.003G052500 Populus trichocarpa HOM05D003870 ORTHO05D004567 2.6e-61 238.8 145 84.8
Ciclev10026722m.g Citrus clementina HOM05D003870 ORTHO05D004567 3.3e-61 238.4 145 84.8
TAR383G0495 Trochodendron aralioides HOM05D003870 ORTHO05D004567 4.4e-61 238.0 145 86.9
VMungo0331G0764 Vigna mungo HOM05D003870 ORTHO05D004567 7.4e-61 237.3 145 85.5
Manes.11G038100 Manihot esculenta HOM05D003870 ORTHO05D004567 1.3e-60 236.5 145 84.1
Lj3g0012525 Lotus japonicus HOM05D003870 ORTHO05D004567 2.2e-60 235.7 149 83.9
Manes.04G129900 Manihot esculenta HOM05D003870 ORTHO05D004567 2.2e-60 235.7 145 84.1
Nitab4.5_0001968g0090 Nicotiana tabacum HOM05D003870 ORTHO05D004567 2.8e-60 235.3 146 87.7
CSS0035581 Camellia sinensis var. sinensis HOM05D003870 ORTHO05D004567 3.7e-60 235.0 145 84.1
Cc04_g03050 Coffea canephora HOM05D003870 ORTHO05D004567 4.8e-60 234.6 145 84.8
PSO782G2129 Papaver somniferum HOM05D003870 ORTHO05D004567 4.8e-60 234.6 146 84.2
PSO832G3918 Papaver somniferum HOM05D003870 ORTHO05D004567 4.8e-60 234.6 146 84.2
Cfa002093 Carpinus fangiana HOM05D003870 ORTHO05D004567 6.3e-60 234.2 145 84.1
Haze_16364 Corylus avellana HOM05D003870 ORTHO05D004567 6.3e-60 234.2 145 84.1
SGA_v2.0_scaffold5G02558 Striga asiatica HOM05D003870 ORTHO05D004567 8.2e-60 233.8 145 82.8
Nn2g11696 Nelumbo nucifera HOM05D003870 ORTHO05D004567 1.1e-59 233.4 145 84.8
Migut.D01017 Erythranthe guttata HOM05D003870 ORTHO05D004567 1.4e-59 233.0 145 82.8
Lalb_Chr14g0373231 Lupinus albus HOM05D003870 ORTHO05D004567 1.4e-59 233.0 145 83.4
Nn3g18073 Nelumbo nucifera HOM05D003870 ORTHO05D004567 1.4e-59 233.0 146 84.9
TAR626G1423 Trochodendron aralioides HOM05D003870 ORTHO05D004567 1.4e-59 233.0 145 84.8
TAR636G2531 Trochodendron aralioides HOM05D003870 ORTHO05D004567 1.4e-59 233.0 145 84.8
Psat5g298080 Pisum sativum HOM05D003870 ORTHO05D004567 1.8e-59 232.6 147 83.0
Actinidia21679 Actinidia chinensis HOM05D003870 ORTHO05D004567 2.4e-59 232.3 145 81.4
Eucgr.F03038 Eucalyptus grandis HOM05D003870 ORTHO05D004567 2.4e-59 232.3 144 83.3
Medtr2g101820 Medicago truncatula HOM05D003870 ORTHO05D004567 3.1e-59 231.9 148 85.1
Sed0024359 Sechium edule HOM05D003870 ORTHO05D004567 4.1e-59 231.5 145 81.4
Aqoxy7G01609 Aquilegia oxysepala HOM05D003870 ORTHO05D004567 5.3e-59 231.1 145 82.8
CSS0004601 Camellia sinensis var. sinensis HOM05D003870 ORTHO05D004567 9.1e-59 230.3 145 81.4
CSS0022866 Camellia sinensis var. sinensis HOM05D003870 ORTHO05D004567 9.1e-59 230.3 145 81.4
CANSAT56G1465 Cannabis sativa HOM05D003870 ORTHO05D004567 1.6e-58 229.6 145 82.8
Lsat_1_v5_gn_5_130901 Lactuca sativa HOM05D003870 ORTHO05D004567 1.6e-58 229.6 143 82.5
CiPaw.01G235900 Carya illinoinensis HOM05D003870 ORTHO05D004567 2.6e-58 228.8 145 81.4
Oeu029644.1 Olea europaea HOM05D003870 ORTHO05D004567 3.5e-58 228.4 145 82.8
Ah.01g021620 Amaranthus hybridus HOM05D003870 ORTHO05D004567 4.5e-58 228.0 145 79.3
Migut.I00942 Erythranthe guttata HOM05D003870 ORTHO05D004567 4.5e-58 228.0 145 80.7
DCAR_023061 Daucus carota HOM05D003870 ORTHO05D004567 5.9e-58 227.6 145 81.4
SGA_v2.0_scaffold69G23361 Striga asiatica HOM05D003870 ORTHO05D004567 5.9e-58 227.6 146 82.2
Prupe.3G067400 Prunus persica HOM05D003870 ORTHO05D004567 7.7e-58 227.3 145 82.1
MD09G1209500 Malus domestica HOM05D003870 ORTHO05D004567 1.3e-57 226.5 145 80.0
Sed0005638 Sechium edule HOM05D003870 ORTHO05D004567 1.3e-57 226.5 145 80.0
CsaV3_3G025000 Cucumis sativus L. HOM05D003870 ORTHO05D004567 1.7e-57 226.1 145 80.0
MBI01_g07179_MAGBIO Magnolia biondii HOM05D003870 ORTHO05D004567 1.7e-57 226.1 145 81.4
Eucgr.J02958 Eucalyptus grandis HOM05D003870 ORTHO05D004567 2.2e-57 225.7 146 81.5
MELO3C012971.2 Cucumis melo HOM05D003870 ORTHO05D004567 2.9e-57 225.3 145 79.3
Lalb_Chr25g0279971 Lupinus albus HOM05D003870 ORTHO05D004567 5.0e-57 224.6 146 80.8
QL05p021780 Quercus lobata HOM05D003870 ORTHO05D004567 5.0e-57 224.6 144 79.9
Rhsim08G0223300 Rhododendron simsii HOM05D003870 ORTHO05D004567 5.0e-57 224.6 146 80.1
RcHm_v2.0_Chr2g0138931 Rosa chinensis HOM05D003870 ORTHO05D004567 5.0e-57 224.6 145 80.0
ClCG07G013150 Citrullus lanatus HOM05D003870 ORTHO05D004567 8.5e-57 223.8 145 79.3
HanXRQChr12g0360771 Helianthus annuus HOM05D003870 ORTHO05D004567 8.5e-57 223.8 145 79.3
GSVIVG01017071001 Vitis vinifera HOM05D003870 ORTHO05D004567 8.5e-57 223.8 145 80.7
FAN05G2130 Fragaria x ananassa HOM05D003870 ORTHO05D004567 1.1e-56 223.4 145 79.3
Glyma.15G016300 Glycine max HOM05D003870 ORTHO05D004567 1.1e-56 223.4 143 81.8
Cpa.g.sc1182.1 Carica papaya HOM05D003870 ORTHO05D004567 1.5e-56 223.0 145 78.6
Duzib160G0587 Durio zibethinus HOM05D003870 ORTHO05D004567 1.5e-56 223.0 145 80.7
FAN14G2389 Fragaria x ananassa HOM05D003870 ORTHO05D004567 1.5e-56 223.0 145 79.3
AUR62011659 Chenopodium quinoa HOM05D003870 ORTHO05D004567 1.9e-56 222.6 145 79.3
FAN02G0928 Fragaria x ananassa HOM05D003870 ORTHO05D004567 2.5e-56 222.2 145 79.3
MSTRG.11054 Avicennia marina HOM05D003870 ORTHO05D004567 3.2e-56 221.9 145 77.2
Thecc.06G092200 Theobroma cacao HOM05D003870 ORTHO05D004567 3.2e-56 221.9 145 80.0
COL.COLO4_30434 Corchorus olitorius HOM05D003870 ORTHO05D004567 4.2e-56 221.5 145 80.0
VMungo1080G1700 Vigna mungo HOM05D003870 ORTHO05D004567 4.2e-56 221.5 138 83.3
EL10Ac9g22029 Beta vulgaris HOM05D003870 ORTHO05D004567 5.5e-56 221.1 145 77.9
Gohir.A05G131700 Gossypium hirsutum HOM05D003870 ORTHO05D004567 5.5e-56 221.1 145 80.0
FvH4_6g31740 Fragaria vesca HOM05D003870 ORTHO05D004567 1.2e-55 219.9 145 78.6
FAN09G1730 Fragaria x ananassa HOM05D003870 ORTHO05D004567 1.6e-55 219.5 145 77.9
Gohir.D05G131200 Gossypium hirsutum HOM05D003870 ORTHO05D004567 1.6e-55 219.5 145 79.3
Gorai.009G134900 Gossypium raimondii HOM05D003870 ORTHO05D004567 1.6e-55 219.5 145 79.3
Lsat_1_v5_gn_1_35241 Lactuca sativa HOM05D003870 ORTHO05D004567 1.6e-55 219.5 144 79.2
BcaB04g18888 Brassica carinata HOM05D003870 ORTHO05D004567 2.1e-55 219.2 146 76.7
CiPaw.02G148900 Carya illinoinensis HOM05D003870 ORTHO05D004567 2.1e-55 219.2 145 78.6
Duzib235G0817 Durio zibethinus HOM05D003870 ORTHO05D004567 2.1e-55 219.2 145 78.6
Sp3g14500 Schrenkiella parvula HOM05D003870 ORTHO05D004567 2.1e-55 219.2 146 76.7
Actinidia32731 Actinidia chinensis HOM05D003870 ORTHO05D004567 2.7e-55 218.8 139 78.4
AT1G52230 Arabidopsis thaliana HOM05D003870 ORTHO05D004567 2.7e-55 218.8 146 75.3
A05p33360 Brassica napus HOM05D003870 ORTHO05D004567 3.6e-55 218.4 146 76.7
BraA05t22161Z Brassica rapa HOM05D003870 ORTHO05D004567 3.6e-55 218.4 146 76.7
BraA08t32272Z Brassica rapa HOM05D003870 ORTHO05D004567 3.6e-55 218.4 146 76.0
AT3G16140 Arabidopsis thaliana HOM05D003870 ORTHO05D004567 4.7e-55 218.0 146 76.0
ECA234G4669 Erigeron canadensis HOM05D003870 ORTHO05D004567 4.7e-55 218.0 142 77.5
Sp1g38770 Schrenkiella parvula HOM05D003870 ORTHO05D004567 4.7e-55 218.0 146 75.3
BcaC05g28907 Brassica carinata HOM05D003870 ORTHO05D004567 6.1e-55 217.6 146 76.7
C05p50360 Brassica napus HOM05D003870 ORTHO05D004567 6.1e-55 217.6 146 76.7
BolC5t33784H Brassica oleracea HOM05D003870 ORTHO05D004567 6.1e-55 217.6 146 76.7
A08p02270 Brassica napus HOM05D003870 ORTHO05D004567 8.0e-55 217.2 146 76.0
BcaB06g25707 Brassica carinata HOM05D003870 ORTHO05D004567 1.4e-54 216.5 146 76.0
C06p07460 Brassica napus HOM05D003870 ORTHO05D004567 1.4e-54 216.5 146 75.3
BolC6t35835H Brassica oleracea HOM05D003870 ORTHO05D004567 1.4e-54 216.5 146 75.3
CARHR042360 Cardamine hirsuta HOM05D003870 ORTHO05D004567 1.4e-54 216.5 146 75.3
BraA01t03856Z Brassica rapa HOM05D003870 ORTHO05D004567 1.8e-54 216.1 146 76.0
Carub.0001s4120 Capsella rubella HOM05D003870 ORTHO05D004567 1.8e-54 216.1 146 75.3
vmacro16969 Vaccinium macrocarpon HOM05D003870 ORTHO05D004567 1.8e-54 216.1 145 78.6
BcaC01g01311 Brassica carinata HOM05D003870 ORTHO05D004567 3.0e-54 215.3 146 74.7
BcaC01g01313 Brassica carinata HOM05D003870 ORTHO05D004567 3.0e-54 215.3 146 74.7
C03p90500 Brassica napus HOM05D003870 ORTHO05D004567 3.0e-54 215.3 146 75.3
BolC3t21374H Brassica oleracea HOM05D003870 ORTHO05D004567 3.0e-54 215.3 146 75.3
Thhalv10021715m.g Eutrema salsugineum HOM05D003870 ORTHO05D004567 3.0e-54 215.3 146 76.0
vmacro18888 Vaccinium macrocarpon HOM05D003870 ORTHO05D004567 3.0e-54 215.3 146 77.4
AL3G28820 Arabidopsis lyrata HOM05D003870 ORTHO05D004567 4.0e-54 214.9 146 75.3
A06p01960 Brassica napus HOM05D003870 ORTHO05D004567 4.0e-54 214.9 146 75.3
BraA06t23412Z Brassica rapa HOM05D003870 ORTHO05D004567 4.0e-54 214.9 146 75.3
Carub.0003s1588 Capsella rubella HOM05D003870 ORTHO05D004567 4.0e-54 214.9 146 76.0
TWI12G1021 Tripterygium wilfordii HOM05D003870 ORTHO05D004567 4.0e-54 214.9 145 77.9
CARHR091300 Cardamine hirsuta HOM05D003870 ORTHO05D004567 5.2e-54 214.5 146 74.0
Thhalv10011814m.g Eutrema salsugineum HOM05D003870 ORTHO05D004567 5.2e-54 214.5 146 75.3
THA.LOC104810527 Tarenaya hassleriana HOM05D003870 ORTHO05D004567 6.7e-54 214.2 147 77.6
Sc15g0001350 Simmondsia chinensis HOM05D003870 ORTHO05D004567 8.8e-54 213.8 143 76.9
A01p37960 Brassica napus HOM05D003870 ORTHO05D004567 1.2e-53 213.4 146 75.3
Aa31LG10G2680 Aethionema arabicum HOM05D003870 ORTHO05D004567 1.5e-53 213.0 146 74.7
THA.LOC104817982 Tarenaya hassleriana HOM05D003870 ORTHO05D004567 2.0e-53 212.6 146 76.0
Rhsim12G0200100 Rhododendron simsii HOM05D003870 ORTHO05D004567 3.3e-53 211.8 145 76.6
ATR0315G019 Amborella trichopoda HOM05D003870 ORTHO05D004567 5.7e-53 211.1 144 77.8
CDE02G4568 Ceratophyllum demersum HOM05D003870 ORTHO05D004567 5.7e-53 211.1 146 76.7
unitig_0.g2124 Utricularia gibba HOM05D003870 ORTHO05D004567 5.7e-53 211.1 145 77.9
Oeu024071.1 Olea europaea HOM05D003870 ORTHO05D004567 9.7e-53 210.3 136 80.1
Hund00643 Selenicereus undatus HOM05D003870 ORTHO05D004567 6.3e-52 207.6 147 74.8
Sopen00g011820 Solanum pennellii HOM05D003870 ORTHO05D004567 8.2e-52 207.2 104 97.1
TWI75G1362 Tripterygium wilfordii HOM05D003870 ORTHO05D004567 1.1e-51 206.8 146 76.0
CDE04G3706 Ceratophyllum demersum HOM05D003870 ORTHO05D004567 1.4e-51 206.5 146 75.3
Glyma.13G357300 Glycine max HOM05D003870 ORTHO05D004567 1.4e-51 206.5 135 80.0
BcaB04g17164 Brassica carinata HOM05D003870 ORTHO05D004567 1.8e-51 206.1 144 73.6
Os05g0560000 Oryza sativa ssp. japonica HOM05D003870 ORTHO05D004567 3.5e-50 201.8 143 74.1
Zm00001eb295610 Zea mays HOM05D003870 ORTHO05D004567 1.1e-48 196.8 146 74.0
AUR62016482 Chenopodium quinoa HOM05D003870 ORTHO05D004567 4.2e-48 194.9 145 73.1
TPR.G37200 Trifolium pratense HOM05D003870 ORTHO05D004567 5.2e-46 188.0 147 72.8
AL1G60400 Arabidopsis lyrata HOM05D003870 ORTHO05D004567 2.6e-45 185.7 103 84.5
SEGI_14279 Sequoiadendron giganteum HOM05D003870 ORTHO05D004567 1.1e-43 180.3 143 67.8
BcaC08g43379 Brassica carinata HOM05D003870 ORTHO05D004567 1.4e-43 179.9 102 83.3
Pp3c15_19390 Physcomitrium patens HOM05D003870 ORTHO05D004567 9.8e-37 157.1 138 55.1
Pp3c9_19520 Physcomitrium patens HOM05D003870 ORTHO05D004567 2.2e-36 156.0 137 56.9
HPP92_021482 Vanilla planifolia HOM05D003870 ORTHO05D004567 2.2e-36 156.0 136 64.7
Mapoly0009s0008 Marchantia polymorpha HOM05D003870 ORTHO05D004567 5.4e-35 151.4 143 55.2
CBR_g31512 Chara braunii HOM05D003870 ORTHO05D004567 2.3e-33 146.0 145 57.2
Duzib192G0641 Durio zibethinus HOM05D003870 ORTHO05D004567 3.3e-32 142.1 98 78.6
Peaxi162Scf00207g00951 Petunia axillaris HOM05D003870 ORTHO05D004567 5.6e-32 141.4 146 63.0
BolC1t04783H Brassica oleracea HOM05D003870 ORTHO05D004567 1.0e-30 137.1 143 55.9
C01p48190 Brassica napus HOM05D003870 ORTHO05D004567 3.0e-30 135.6 143 56.6
Dinv30483 Davidia involucrata HOM05D003870 ORTHO05D004567 4.1e-27 125.2 85 76.5
MD17G1191200 Malus domestica HOM05D003870 ORTHO05D004567 1.3e-25 120.2 85 74.1
MD17G1191400 Malus domestica HOM05D003870 ORTHO05D004567 3.6e-23 112.1 60 91.7
HanXRQChr10g0313451 Helianthus annuus HOM05D003870 ORTHO05D004567 4.7e-23 111.7 84 69.0
ECA247G2331 Erigeron canadensis HOM05D003870 ORTHO05D004567 4.0e-22 108.6 80 68.8
MCO07G351 Micromonas commoda HOM05D003870 ORTHO05D004567 1.1e-16 90.5 126 41.3
MD10G1187500 Malus domestica HOM05D003870 ORTHO05D004567 9.9e-13 77.4 62 62.9
MD14G1193300 Malus domestica HOM05D003870 ORTHO05D004567 1.3e-12 77.0 62 66.1
unitig_747.g21485 Utricularia gibba HOM05D003870 ORTHO05D004567 1.7e-12 76.6 140 40.7
Zm00001eb343540 Zea mays HOM05D003870 ORTHO05D004567 1.1e-11 73.9 123 43.1
Cre07.g330250 Chlamydomonas reinhardtii HOM05D003870 ORTHO05D004567 2.4e-11 72.8 116 37.9
MD02G1178900 Malus domestica HOM05D003870 ORTHO05D004567 5.1e-09 65.1 33 87.9


User provided reference genes

Program Settings