Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen12g021620 Solanum pennellii HOM05D004918 ORTHO05D005706 7.0e-130 467.2 226 100.0
Solyc12g042530.2 Solanum lycopersicum HOM05D004918 ORTHO05D005706 2.0e-124 449.1 226 95.6
PGSC0003DMG402014462 Solanum tuberosum HOM05D004918 ORTHO05D005706 1.2e-113 413.3 226 87.6
Peaxi162Scf00314g01045 Petunia axillaris HOM05D004918 ORTHO05D005706 9.6e-71 270.8 217 59.4
PGSC0003DMG400014153 Solanum tuberosum HOM05D004918 ORTHO05D005706 2.6e-68 262.7 222 59.0
CSS0025832 Camellia sinensis var. sinensis HOM05D004918 ORTHO05D005706 1.7e-67 260.0 209 58.4
Nitab4.5_0002700g0180 Nicotiana tabacum HOM05D004918 ORTHO05D005706 1.7e-67 260.0 219 58.0
Sopen03g036560 Solanum pennellii HOM05D004918 ORTHO05D005706 3.8e-67 258.8 222 58.1
Dinv23270 Davidia involucrata HOM05D004918 ORTHO05D005706 1.4e-66 256.9 219 57.5
Nitab4.5_0004738g0120 Nicotiana tabacum HOM05D004918 ORTHO05D005706 5.5e-66 255.0 225 56.9
DCAR_025541 Daucus carota HOM05D004918 ORTHO05D005706 6.0e-65 251.5 221 55.7
TAR625G0238 Trochodendron aralioides HOM05D004918 ORTHO05D005706 3.9e-64 248.8 214 55.6
CiPaw.02G163500 Carya illinoinensis HOM05D004918 ORTHO05D005706 2.5e-63 246.1 213 54.5
Manes.11G069000 Manihot esculenta HOM05D004918 ORTHO05D005706 7.4e-63 244.6 206 54.9
MD12G1013200 Malus domestica HOM05D004918 ORTHO05D005706 9.6e-63 244.2 213 53.1
Potri.003G184701 Populus trichocarpa HOM05D004918 ORTHO05D005706 9.6e-63 244.2 203 54.7
Gohir.A05G117500 Gossypium hirsutum HOM05D004918 ORTHO05D005706 2.1e-62 243.0 210 54.8
Cfa001859 Carpinus fangiana HOM05D004918 ORTHO05D005706 3.7e-62 242.3 213 52.6
Nn2g12451 Nelumbo nucifera HOM05D004918 ORTHO05D005706 4.8e-62 241.9 221 50.7
RcHm_v2.0_Chr2g0132361 Rosa chinensis HOM05D004918 ORTHO05D005706 4.8e-62 241.9 229 51.1
GSVIVG01016107001 Vitis vinifera HOM05D004918 ORTHO05D005706 4.8e-62 241.9 196 56.1
Migut.I00673 Erythranthe guttata HOM05D004918 ORTHO05D005706 8.1e-62 241.1 225 52.0
Gorai.009G122300 Gossypium raimondii HOM05D004918 ORTHO05D005706 1.1e-61 240.7 210 54.8
Prupe.3G103300 Prunus persica HOM05D004918 ORTHO05D005706 1.4e-61 240.4 213 53.5
Nn2g14031 Nelumbo nucifera HOM05D004918 ORTHO05D005706 1.8e-61 240.0 209 52.6
Sabra03G0135200 Salix brachista HOM05D004918 ORTHO05D005706 2.4e-61 239.6 203 54.2
MD14G1138800 Malus domestica HOM05D004918 ORTHO05D005706 3.1e-61 239.2 215 52.6
CsaV3_3G032650 Cucumis sativus L. HOM05D004918 ORTHO05D005706 6.9e-61 238.0 214 51.9
Ciclev10026430m.g Citrus clementina HOM05D004918 ORTHO05D005706 2.0e-60 236.5 213 53.5
Hma1.2p1_1914F.1_g307380 Hydrangea macrophylla HOM05D004918 ORTHO05D005706 2.0e-60 236.5 209 55.0
Actinidia25464 Actinidia chinensis HOM05D004918 ORTHO05D005706 4.5e-60 235.3 195 55.9
Atru.chr1.2801 Acer truncatum HOM05D004918 ORTHO05D005706 2.2e-59 233.0 209 53.6
CiPaw.01G073400 Carya illinoinensis HOM05D004918 ORTHO05D005706 2.9e-59 232.6 212 52.8
CANSAT35G0550 Cannabis sativa HOM05D004918 ORTHO05D005706 4.9e-59 231.9 205 53.2
Cpa.g.sc14.108 Carica papaya HOM05D004918 ORTHO05D005706 4.9e-59 231.9 207 51.2
Oeu004556.1 Olea europaea HOM05D004918 ORTHO05D005706 4.9e-59 231.9 209 51.7
Thecc.06G046100 Theobroma cacao HOM05D004918 ORTHO05D005706 8.4e-59 231.1 191 55.5
Duzib192G0308 Durio zibethinus HOM05D004918 ORTHO05D005706 1.1e-58 230.7 209 51.2
ECA232G4560 Erigeron canadensis HOM05D004918 ORTHO05D005706 1.4e-58 230.3 226 50.9
QL10p031453 Quercus lobata HOM05D004918 ORTHO05D005706 1.4e-58 230.3 193 54.4
Glyma.09G000800 Glycine max HOM05D004918 ORTHO05D005706 2.5e-58 229.6 214 50.5
THA.LOC104808174 Tarenaya hassleriana HOM05D004918 ORTHO05D005706 4.2e-58 228.8 199 53.3
ClCG10G012810 Citrullus lanatus HOM05D004918 ORTHO05D005706 5.5e-58 228.4 214 51.4
HanXRQChr10g0298641 Helianthus annuus HOM05D004918 ORTHO05D005706 7.1e-58 228.0 183 56.3
arahy.Tifrunner.gnm1.ann1.T9YNFF Arachis hypogaea HOM05D004918 ORTHO05D005706 9.3e-58 227.6 221 49.3
Lj6g0018730 Lotus japonicus HOM05D004918 ORTHO05D005706 9.3e-58 227.6 197 52.8
Lalb_Chr13g0301111 Lupinus albus HOM05D004918 ORTHO05D005706 1.2e-57 227.3 214 50.5
TWI12G0375 Tripterygium wilfordii HOM05D004918 ORTHO05D005706 1.2e-57 227.3 227 50.7
Atru.chr8.1159 Acer truncatum HOM05D004918 ORTHO05D005706 1.6e-57 226.9 205 52.2
BcaB03g14507 Brassica carinata HOM05D004918 ORTHO05D005706 2.1e-57 226.5 210 50.5
A09p61040 Brassica napus HOM05D004918 ORTHO05D005706 2.1e-57 226.5 210 51.0
THA.LOC104812419 Tarenaya hassleriana HOM05D004918 ORTHO05D005706 2.1e-57 226.5 201 51.7
PGR102G0155 Punica granatum HOM05D004918 ORTHO05D005706 2.7e-57 226.1 200 52.0
MSTRG.22808 Avicennia marina HOM05D004918 ORTHO05D005706 3.5e-57 225.7 211 49.8
BraA09t41477Z Brassica rapa HOM05D004918 ORTHO05D005706 6.0e-57 224.9 210 50.5
Solyc03g117650.4 Solanum lycopersicum HOM05D004918 ORTHO05D005706 6.0e-57 224.9 215 53.5
C08p44630 Brassica napus HOM05D000031 ORTHO05D007294 1.0e-56 224.2 212 49.5
VMungo1309G0542 Vigna mungo HOM05D004918 ORTHO05D005706 8.7e-56 221.1 190 54.2
FAN09G4697 Fragaria x ananassa HOM05D004918 ORTHO05D005706 1.1e-55 220.7 221 48.9
HanXRQChr17g0561891 Helianthus annuus HOM05D004918 ORTHO05D005706 1.5e-55 220.3 215 50.2
AL1G28210 Arabidopsis lyrata HOM05D004918 ORTHO05D005706 1.9e-55 219.9 217 49.3
CARHR016550 Cardamine hirsuta HOM05D004918 ORTHO05D005706 1.9e-55 219.9 217 48.8
TPR.G15094 Trifolium pratense HOM05D004918 ORTHO05D005706 2.5e-55 219.5 209 49.8
Medtr3g110270 Medicago truncatula HOM05D004918 ORTHO05D005706 3.3e-55 219.2 209 49.3
SalBow8G2778 Salvia bowleyana HOM05D004918 ORTHO05D005706 7.4e-55 218.0 216 49.1
A08p31410 Brassica napus HOM05D004918 ORTHO05D005706 9.6e-55 217.6 220 46.8
BraA08t35064Z Brassica rapa HOM05D004918 ORTHO05D005706 9.6e-55 217.6 220 46.8
Thhalv10008658m.g Eutrema salsugineum HOM05D004918 ORTHO05D005706 9.6e-55 217.6 202 50.5
BcaC05g25623 Brassica carinata HOM05D004918 ORTHO05D005706 1.3e-54 217.2 219 48.4
C05p14240 Brassica napus HOM05D004918 ORTHO05D005706 1.3e-54 217.2 219 48.4
Sp1g14360 Schrenkiella parvula HOM05D004918 ORTHO05D005706 1.3e-54 217.2 210 51.0
Sc05g0005820 Simmondsia chinensis HOM05D004918 ORTHO05D005706 1.3e-54 217.2 208 49.0
Phvul.009G194500 Phaseolus vulgaris HOM05D004918 ORTHO05D005706 1.6e-54 216.9 225 46.7
Cc04_g05650 Coffea canephora HOM05D004918 ORTHO05D005706 2.1e-54 216.5 213 50.2
A06p12070 Brassica napus HOM05D004918 ORTHO05D005706 2.8e-54 216.1 219 47.9
Psat5g020280 Pisum sativum HOM05D004918 ORTHO05D005706 2.8e-54 216.1 214 48.1
BcaC07g38802 Brassica carinata HOM05D004918 ORTHO05D005706 4.8e-54 215.3 207 49.3
Aa31LG7G620 Aethionema arabicum HOM05D004918 ORTHO05D005706 8.2e-54 214.5 195 49.7
Carub.0001s1585 Capsella rubella HOM05D004918 ORTHO05D005706 1.1e-53 214.2 219 45.7
Cc04_g05280 Coffea canephora HOM05D004918 ORTHO05D005706 1.4e-53 213.8 213 50.2
PSO724G0600 Papaver somniferum HOM05D004918 ORTHO05D005706 1.4e-53 213.8 197 49.2
PSO729G0217 Papaver somniferum HOM05D004918 ORTHO05D005706 1.4e-53 213.8 197 49.2
CDE02G0643 Ceratophyllum demersum HOM05D004918 ORTHO05D005706 2.4e-53 213.0 209 48.8
Ah.01g002790 Amaranthus hybridus HOM05D004918 ORTHO05D005706 3.1e-53 212.6 198 49.0
SGA_v2.0_scaffold419G51286 Striga asiatica HOM05D004918 ORTHO05D005706 3.1e-53 212.6 211 48.8
AT1G16040 Arabidopsis thaliana HOM05D004918 ORTHO05D005706 4.1e-53 212.2 198 49.0
PSO017G2949 Papaver somniferum HOM05D004918 ORTHO05D005706 4.1e-53 212.2 197 49.2
C08p17380 Brassica napus HOM05D004918 ORTHO05D005706 9.0e-53 211.1 207 49.3
BolC8t49364H Brassica oleracea HOM05D004918 ORTHO05D005706 9.0e-53 211.1 207 49.3
Eucgr.F03982 Eucalyptus grandis HOM05D004918 ORTHO05D005706 1.2e-52 210.7 191 53.4
BolC5t30156H Brassica oleracea HOM05D004918 ORTHO05D005706 1.5e-52 210.3 220 47.7
CAN.G276.2 Capsicum annuum HOM05D004918 ORTHO05D005706 4.5e-52 208.8 165 61.2
BraA06t24376Z Brassica rapa HOM05D004918 ORTHO05D005706 7.6e-52 208.0 220 46.8
Glyma.09G000900 Glycine max HOM05D004918 ORTHO05D005706 1.7e-51 206.8 168 56.0
Sed0025979 Sechium edule HOM05D004918 ORTHO05D005706 2.9e-51 206.1 223 43.5
HPP92_001544 Vanilla planifolia HOM05D004918 ORTHO05D005706 2.9e-51 206.1 199 50.3
BcaB02g06654 Brassica carinata HOM05D004918 ORTHO05D005706 6.5e-51 204.9 210 46.2
PSO063G6564 Papaver somniferum HOM05D004918 ORTHO05D005706 1.1e-50 204.1 179 49.2
COL.COLO4_24896 Corchorus olitorius HOM05D004918 ORTHO05D005706 1.4e-50 203.8 207 47.8
FAN02G2144 Fragaria x ananassa HOM05D004918 ORTHO05D005706 1.4e-50 203.8 232 45.7
SEGI_14369 Sequoiadendron giganteum HOM05D004918 ORTHO05D005706 2.5e-50 203.0 196 46.9
MBI19_g12142_MAGBIO Magnolia biondii HOM05D004918 ORTHO05D005706 7.2e-50 201.4 209 48.3
Rhsim08G0203200 Rhododendron simsii HOM05D004918 ORTHO05D005706 1.2e-49 200.7 172 57.0
arahy.Tifrunner.gnm1.ann1.ZUNL57 Arachis hypogaea HOM05D004918 ORTHO05D005706 7.9e-49 198.0 212 47.2
HanXRQChr16g0499441 Helianthus annuus HOM05D004918 ORTHO05D005706 1.0e-48 197.6 205 49.8
BolC8t52009H Brassica oleracea HOM05D000031 ORTHO05D007294 2.3e-48 196.4 237 43.0
SHI05687 Sapria himalayana HOM05D004918 ORTHO05D005706 6.7e-48 194.9 177 48.0
MELO3C028676.2 Cucumis melo HOM05D004918 ORTHO05D005706 8.7e-48 194.5 198 47.5
SalBow8G2909 Salvia bowleyana HOM05D004918 ORTHO05D005706 2.5e-47 193.0 187 49.7
Lsat_1_v5_gn_4_85101 Lactuca sativa HOM05D004918 ORTHO05D005706 3.3e-47 192.6 174 51.7
Zm00001eb403520 Zea mays HOM05D004918 ORTHO05D005706 1.6e-46 190.3 177 50.8
FAN09G3573 Fragaria x ananassa HOM05D004918 ORTHO05D005706 4.1e-45 185.7 230 45.7
ATR0568G024 Amborella trichopoda HOM05D004918 ORTHO05D005706 2.6e-44 183.0 168 48.8
Oeu035883.1 Olea europaea HOM05D004918 ORTHO05D005706 1.0e-43 181.0 183 48.1
Aqoxy4G02614 Aquilegia oxysepala HOM05D004918 ORTHO05D005706 2.2e-43 179.9 133 57.9
BcaB03g13048 Brassica carinata HOM05D004918 ORTHO05D005706 3.8e-43 179.1 222 42.3
Haze_16687 Corylus avellana HOM05D004918 ORTHO05D005706 1.2e-41 174.1 172 51.2
vmacro19072 Vaccinium macrocarpon HOM05D004918 ORTHO05D005706 2.1e-41 173.3 205 45.4
Os03g0129000 Oryza sativa ssp. japonica HOM05D004918 ORTHO05D005706 6.1e-41 171.8 197 41.6
CAN.G1008.5 Capsicum annuum HOM05D000348 ORTHO05D005706 1.8e-37 160.2 108 69.4
FAN14G3036 Fragaria x ananassa HOM05D004918 ORTHO05D005706 7.7e-36 154.8 250 37.6
Ca_15577_v3 Cicer arietinum L. HOM05D004918 ORTHO05D005706 2.5e-34 149.8 108 62.0
Pp3c8_15970 Physcomitrium patens HOM05D004918 ORTHO05D005706 2.5e-34 149.8 208 37.0
arahy.Tifrunner.gnm1.ann1.BN6NH6 Arachis hypogaea HOM05D004918 ORTHO05D005706 5.5e-34 148.7 217 39.6
arahy.Tifrunner.gnm1.ann1.U5XJV3 Arachis hypogaea HOM05D004918 ORTHO05D005706 1.4e-32 144.1 213 39.0
unitig_62.g23577 Utricularia gibba HOM05D004918 ORTHO05D005706 1.8e-32 143.7 240 35.4
CBR_g41678 Chara braunii HOM05D004918 ORTHO05D005706 2.3e-32 143.3 139 44.6
FvH4_6g28300 Fragaria vesca HOM05D004918 ORTHO05D005706 2.3e-32 143.3 131 50.4
Mapoly0005s0096 Marchantia polymorpha HOM05D004918 ORTHO05D005706 2.8e-30 136.3 184 37.0
EL10Ac4g09605 Beta vulgaris HOM05D004918 ORTHO05D005706 2.4e-29 133.3 186 38.7
SMO351G0301 Selaginella moellendorffii HOM05D004918 ORTHO05D005706 8.5e-19 98.2 131 37.4
Gohir.D05G118400 Gossypium hirsutum HOM05D004918 ORTHO05D005706 1.9e-18 97.1 102 47.1
Os10g0200800 Oryza sativa ssp. japonica HOM05D004918 ORTHO05D005706 2.5e-18 96.7 63 63.5
AagrBONN_evm.TU.Sc2ySwM_344.4108 Anthoceros agrestis HOM05D004918 ORTHO05D005706 2.1e-17 93.6 92 44.6
CAN.G829.5 Capsicum annuum HOM05D004534 ORTHO05D005706 1.4e-13 80.9 79 48.1
CAN.G1986.5 Capsicum annuum HOM05D004918 ORTHO05D005706 2.4e-13 80.1 61 54.1
Zm00001eb002240 Zea mays HOM05D004918 ORTHO05D005706 2.0e-12 77.0 83 45.8
CAN.G548.17 Capsicum annuum HOM05D002478 ORTHO05D005706 3.5e-12 76.3 59 61.0
BcaC05g25622 Brassica carinata HOM05D004918 ORTHO05D005706 1.0e-11 74.7 54 55.6
BcaC03g14995 Brassica carinata HOM05D004918 ORTHO05D005706 1.3e-11 74.3 65 50.8
CAN.G53.21 Capsicum annuum HOM05D002478 ORTHO05D020307 1.7e-11 73.9 53 64.2
Actinidia08937 Actinidia chinensis HOM05D004918 ORTHO05D005706 6.5e-11 72.0 50 64.0
AUR62034078 Chenopodium quinoa HOM05D004918 ORTHO05D005706 1.2e-09 67.8 70 48.6
MCO15G581 Micromonas commoda HOM05D004918 ORTHO05D005706 6.1e-09 65.5 149 30.9
MELO3C000966.2 Cucumis melo HOM05D004918 ORTHO05D005706 1.8e-08 63.9 82 40.2
AUR62012861 Chenopodium quinoa HOM05D004918 ORTHO05D005706 4.0e-08 62.8 51 54.9
Cfa026120 Carpinus fangiana HOM05D004918 ORTHO05D125238 2.8e-06 56.6 124 31.5


User provided reference genes

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