Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen12g021240 Solanum pennellii HOM05D003971 ORTHO05D004762 0.0e+00 1164.1 588 100.0
Solyc12g042200.2 Solanum lycopersicum HOM05D003971 ORTHO05D004762 0.0e+00 1130.2 588 97.4
Nitab4.5_0008403g0010 Nicotiana tabacum HOM05D003971 ORTHO05D004762 1.2e-274 949.5 592 82.1
Peaxi162Scf01168g00013 Petunia axillaris HOM05D003971 ORTHO05D004762 3.5e-274 948.0 573 83.9
Nitab4.5_0002584g0020 Nicotiana tabacum HOM05D003971 ORTHO05D004762 1.8e-270 935.6 592 81.8
PGSC0003DMG400014242 Solanum tuberosum HOM05D003971 ORTHO05D004762 1.7e-204 716.5 560 66.1
Sopen03g037130 Solanum pennellii HOM05D003971 ORTHO05D004762 4.4e-200 701.8 558 64.7
Migut.I00618 Erythranthe guttata HOM05D003971 ORTHO05D004762 1.3e-199 700.3 564 64.2
CSS0040569 Camellia sinensis var. sinensis HOM05D003971 ORTHO05D004762 3.7e-199 698.7 595 61.2
Cc04_g05880 Coffea canephora HOM05D003971 ORTHO05D004762 4.8e-199 698.4 553 64.2
MSTRG.22849 Avicennia marina HOM05D003971 ORTHO05D004762 1.6e-194 683.3 571 62.2
Aqoxy1G00170 Aquilegia oxysepala HOM05D003971 ORTHO05D004762 1.4e-193 680.2 575 60.2
TAR622G0096 Trochodendron aralioides HOM05D003971 ORTHO05D004762 1.8e-193 679.9 588 61.1
Lsat_1_v5_gn_5_10121 Lactuca sativa HOM05D003971 ORTHO05D004762 8.9e-193 677.6 568 62.1
Peaxi162Scf00314g00638 Petunia axillaris HOM05D003971 ORTHO05D004762 3.4e-192 675.6 573 61.4
Ciclev10031176m.g Citrus clementina HOM05D003971 ORTHO05D004762 4.4e-192 675.2 557 61.2
ECA246G0638 Erigeron canadensis HOM05D003971 ORTHO05D004762 6.3e-191 671.4 561 62.7
Lj9C486T6 Lonicera japonica HOM05D003971 ORTHO05D004762 1.4e-190 670.2 598 59.4
Cpa.g.sc13.168 Carica papaya HOM05D003971 ORTHO05D004762 1.2e-189 667.2 553 60.0
Phvul.009G161300 Phaseolus vulgaris HOM05D003971 ORTHO05D004762 5.9e-189 664.8 572 59.8
GSVIVG01008647001 Vitis vinifera HOM05D003971 ORTHO05D004762 6.6e-188 661.4 574 58.9
Cfa018707 Carpinus fangiana HOM05D003971 ORTHO05D004762 1.5e-187 660.2 559 61.4
Actinidia18301 Actinidia chinensis HOM05D003971 ORTHO05D004762 4.3e-187 658.7 588 59.2
Atru.chr6.1916 Acer truncatum HOM05D003971 ORTHO05D004762 9.5e-187 657.5 550 60.0
Glyma.06G163900 Glycine max HOM05D003971 ORTHO05D004762 1.6e-186 656.8 561 61.0
Nn4g22021 Nelumbo nucifera HOM05D003971 ORTHO05D004762 2.3e-185 652.9 562 60.0
Lalb_Chr11g0069181 Lupinus albus HOM05D003971 ORTHO05D004762 3.1e-185 652.5 576 59.0
Duzib084G0567 Durio zibethinus HOM05D003971 ORTHO05D004762 4.0e-185 652.1 560 60.5
HanXRQChr05g0155401 Helianthus annuus HOM05D003971 ORTHO05D004762 1.2e-184 650.6 567 60.8
arahy.Tifrunner.gnm1.ann1.9UH1TF Arachis hypogaea HOM05D003971 ORTHO05D004762 1.5e-184 650.2 582 59.6
Thecc.03G140300 Theobroma cacao HOM05D003971 ORTHO05D004762 1.5e-184 650.2 578 58.7
MD06G1130900 Malus domestica HOM05D003971 ORTHO05D004762 2.6e-184 649.4 571 58.5
Rhsim08G0197300 Rhododendron simsii HOM05D003971 ORTHO05D004762 3.4e-184 649.0 604 56.8
Lj1g0015188 Lotus japonicus HOM05D003971 ORTHO05D004762 2.2e-183 646.4 571 59.2
arahy.Tifrunner.gnm1.ann1.86AC6C Arachis hypogaea HOM05D003971 ORTHO05D004762 3.7e-183 645.6 602 58.5
Prupe.5G142100 Prunus persica HOM05D003971 ORTHO05D004762 2.4e-182 642.9 559 59.0
MD14G1147500 Malus domestica HOM05D003971 ORTHO05D004762 5.4e-182 641.7 555 58.6
Potri.012G108100 Populus trichocarpa HOM05D003971 ORTHO05D004762 5.4e-182 641.7 581 57.3
PSO384G2792 Papaver somniferum HOM05D003971 ORTHO05D004762 9.2e-182 641.0 574 57.8
CANSAT56G1634 Cannabis sativa HOM05D003971 ORTHO05D004762 1.6e-181 640.2 562 60.7
Gohir.D03G110400 Gossypium hirsutum HOM05D003971 ORTHO05D004762 2.7e-181 639.4 554 59.9
QL10p000509 Quercus lobata HOM05D003971 ORTHO05D004762 1.3e-180 637.1 638 54.7
Lj5C87G6 Lonicera japonica HOM05D003971 ORTHO05D004762 5.0e-180 635.2 534 61.6
FvH4_5g09480 Fragaria vesca HOM05D003971 ORTHO05D004762 6.6e-180 634.8 556 58.5
DCAR_021401 Daucus carota HOM05D003971 ORTHO05D004762 8.6e-180 634.4 585 57.6
PSO339G4968 Papaver somniferum HOM05D003971 ORTHO05D004762 1.1e-179 634.0 565 58.8
FAN18G1571 Fragaria x ananassa HOM05D003971 ORTHO05D004762 9.5e-179 630.9 556 58.3
FAN13G1049 Fragaria x ananassa HOM05D003971 ORTHO05D004762 1.2e-178 630.6 556 58.1
Gohir.A03G056200 Gossypium hirsutum HOM05D003971 ORTHO05D004762 2.1e-178 629.8 574 57.7
MELO3C002386.2 Cucumis melo HOM05D003971 ORTHO05D004762 3.1e-177 625.9 558 58.1
Gorai.003G116700 Gossypium raimondii HOM05D003971 ORTHO05D004762 8.9e-177 624.4 565 58.1
CsaV3_1G009920 Cucumis sativus L. HOM05D003971 ORTHO05D004762 2.0e-176 623.2 558 58.1
vmacro19182 Vaccinium macrocarpon HOM05D003971 ORTHO05D004762 3.4e-176 622.5 569 58.0
Medtr3g098600 Medicago truncatula HOM05D003971 ORTHO05D004762 4.4e-176 622.1 567 58.7
FAN04G0277 Fragaria x ananassa HOM05D003971 ORTHO05D004762 1.3e-175 620.5 556 57.4
Oeu046606.1 Olea europaea HOM05D003971 ORTHO05D004762 1.3e-175 620.5 514 62.6
RcHm_v2.0_Chr7g0188721 Rosa chinensis HOM05D003971 ORTHO05D004762 8.3e-175 617.8 539 58.1
Sed0008211 Sechium edule HOM05D003971 ORTHO05D004762 3.2e-174 615.9 557 57.3
Psat5g055040 Pisum sativum HOM05D003971 ORTHO05D004762 2.1e-173 613.2 582 55.8
Sabra12G0079300 Salix brachista HOM05D003971 ORTHO05D004762 2.3e-172 609.8 594 56.1
CiPaw.11G001000 Carya illinoinensis HOM05D003971 ORTHO05D004762 8.6e-172 607.8 525 60.4
TWI39G0398 Tripterygium wilfordii HOM05D003971 ORTHO05D004762 1.2e-170 604.0 556 57.4
ClCG03G004040 Citrullus lanatus HOM05D003971 ORTHO05D004762 1.1e-169 600.9 571 56.0
Nitab4.5_0000976g0020 Nicotiana tabacum HOM05D003971 ORTHO05D004762 1.1e-169 600.9 484 65.9
Gorai.001G054100 Gossypium raimondii HOM05D003971 ORTHO05D004762 2.6e-168 596.3 560 55.9
Gohir.D07G051000 Gossypium hirsutum HOM05D003971 ORTHO05D004762 3.4e-168 595.9 560 55.5
Gohir.A07G046700 Gossypium hirsutum HOM05D003971 ORTHO05D004762 5.8e-168 595.1 560 55.0
PGR083G2644 Punica granatum HOM05D003971 ORTHO05D004762 2.9e-167 592.8 589 54.5
Ca_10878_v3 Cicer arietinum L. HOM05D003971 ORTHO05D004762 1.9e-166 590.1 447 65.1
MBI07_g41261_MAGBIO Magnolia biondii HOM05D003971 ORTHO05D004762 9.2e-166 587.8 589 55.2
Hund02509 Selenicereus undatus HOM05D003971 ORTHO05D004762 1.0e-164 584.3 591 53.3
Glyma.04G201300 Glycine max HOM05D003971 ORTHO05D004762 2.3e-164 583.2 561 55.3
Sabra15G0126400 Salix brachista HOM05D003971 ORTHO05D004762 1.5e-163 580.5 622 51.3
Manes.06G126801 Manihot esculenta HOM05D003971 ORTHO05D004762 3.3e-163 579.3 508 58.9
FAN08G0744 Fragaria x ananassa HOM05D003971 ORTHO05D004762 5.6e-163 578.6 586 52.4
THA.LOC104825039 Tarenaya hassleriana HOM05D003971 ORTHO05D004762 4.7e-162 575.5 583 54.2
TWI23G0486 Tripterygium wilfordii HOM05D003971 ORTHO05D004762 6.2e-162 575.1 589 53.3
Hund10040 Selenicereus undatus HOM05D003971 ORTHO05D004762 8.1e-162 574.7 591 51.4
Sc22g0003380 Simmondsia chinensis HOM05D003971 ORTHO05D004762 2.4e-161 573.2 554 54.0
ClCG06G018370 Citrullus lanatus HOM05D003971 ORTHO05D004762 8.9e-161 571.2 586 53.8
Haze_07098 Corylus avellana HOM05D003971 ORTHO05D004762 9.9e-160 567.8 642 51.6
Eucgr.K00065 Eucalyptus grandis HOM05D003971 ORTHO05D004762 1.3e-159 567.4 563 53.3
Lsat_1_v5_gn_4_84501 Lactuca sativa HOM05D003971 ORTHO05D004762 1.4e-158 563.9 566 54.2
DCAR_016341 Daucus carota HOM05D003971 ORTHO05D004762 1.6e-157 560.5 633 49.0
AUR62041703 Chenopodium quinoa HOM05D003971 ORTHO05D004762 1.9e-155 553.5 478 58.6
AUR62009537 Chenopodium quinoa HOM05D003971 ORTHO05D004762 3.3e-155 552.7 635 50.7
BraA03t10933Z Brassica rapa HOM05D003971 ORTHO05D004762 9.6e-155 551.2 561 52.8
EL10Ac5g11286 Beta vulgaris HOM05D003971 ORTHO05D004762 1.6e-154 550.4 588 50.3
Thhalv10013209m.g Eutrema salsugineum HOM05D003971 ORTHO05D004762 2.1e-154 550.1 558 53.6
BolC3t14318H Brassica oleracea HOM05D003971 ORTHO05D004762 2.8e-154 549.7 562 51.8
AUR62041701 Chenopodium quinoa HOM05D003971 ORTHO05D004762 4.8e-154 548.9 369 69.9
C03p19320 Brassica napus HOM05D003971 ORTHO05D004762 1.4e-153 547.4 557 51.7
Carub.0008s1099 Capsella rubella HOM05D003971 ORTHO05D004762 2.6e-152 543.1 561 52.4
AT5G50970 Arabidopsis thaliana HOM05D003971 ORTHO05D004762 3.4e-152 542.7 577 52.0
Sp6g13140 Schrenkiella parvula HOM05D003971 ORTHO05D004762 4.4e-152 542.3 569 51.7
CsaV3_1G000070 Cucumis sativus L. HOM05D003971 ORTHO05D004762 9.9e-152 541.2 557 50.3
AL8G25160 Arabidopsis lyrata HOM05D003971 ORTHO05D004762 2.9e-151 539.7 577 51.3
Sed0022051 Sechium edule HOM05D003971 ORTHO05D004762 4.9e-151 538.9 555 51.5
A03p16430 Brassica napus HOM05D003971 ORTHO05D004762 3.2e-150 536.2 558 51.6
CARHR257220 Cardamine hirsuta HOM05D003971 ORTHO05D004762 7.8e-149 531.6 577 52.3
Lj4g0027413 Lotus japonicus HOM05D003971 ORTHO05D004762 3.9e-148 529.3 558 51.1
MBI03_g13042_MAGBIO Magnolia biondii HOM05D003971 ORTHO05D004762 1.9e-147 526.9 370 66.8
Solyc03g118220.3 Solanum lycopersicum HOM05D003971 ORTHO05D004762 4.8e-146 522.3 453 61.8
VMungo0251G1950 Vigna mungo HOM05D000512 ORTHO05D000861 1.3e-143 514.2 574 50.7
unitig_21.g20335 Utricularia gibba HOM05D003971 ORTHO05D004762 8.4e-143 511.5 562 49.1
MELO3C026159.2 Cucumis melo HOM05D003971 ORTHO05D004762 1.1e-142 511.1 414 58.9
ATR0582G269 Amborella trichopoda HOM05D003971 ORTHO05D004762 3.2e-142 509.6 471 53.9
BcaC01g06062 Brassica carinata HOM05D003971 ORTHO05D004762 4.2e-142 509.2 557 49.0
TPR.G25960 Trifolium pratense HOM05D003971 ORTHO05D004762 8.1e-138 495.0 558 51.1
Zm00001eb210690 Zea mays HOM05D003971 ORTHO05D004762 1.4e-137 494.2 598 48.3
Medtr8g100180 Medicago truncatula HOM05D003971 ORTHO05D004762 3.1e-137 493.0 558 47.3
Phvul.002G281600 Phaseolus vulgaris HOM05D003971 ORTHO05D004762 2.0e-136 490.3 566 49.1
Cc03_g15560 Coffea canephora HOM05D003971 ORTHO05D004762 7.6e-136 488.4 571 50.1
TPR.G12938 Trifolium pratense HOM05D003971 ORTHO05D004762 2.9e-135 486.5 360 61.9
VMungo1309G0830 Vigna mungo HOM05D003971 ORTHO05D004762 4.2e-134 482.6 299 73.2
HPP92_028338 Vanilla planifolia HOM05D003971 ORTHO05D004762 6.7e-132 475.3 589 47.7
SEGI_34710 Sequoiadendron giganteum HOM05D003971 ORTHO05D004762 2.5e-131 473.4 347 64.6
Zm00001eb064630 Zea mays HOM05D003971 ORTHO05D004762 7.4e-131 471.9 558 47.7
SHI34430 Sapria himalayana HOM05D003971 ORTHO05D004762 4.8e-130 469.2 549 46.6
Potri.015G106300 Populus trichocarpa HOM05D003971 ORTHO05D004762 2.3e-124 450.3 474 51.3
Ah.11g046910 Amaranthus hybridus HOM05D001469 ORTHO05D001648 1.6e-122 444.1 338 62.7
Sc04g0000200 Simmondsia chinensis HOM05D003971 ORTHO05D004762 4.3e-115 419.5 450 50.4
Aa31LG3G7450 Aethionema arabicum HOM05D003971 ORTHO05D004762 1.3e-114 417.9 389 56.8
Mapoly0008s0248 Marchantia polymorpha HOM05D003971 ORTHO05D004762 2.8e-114 416.8 349 55.9
AL6G31450 Arabidopsis lyrata HOM05D003971 ORTHO05D004762 3.1e-113 413.3 364 52.5
AT5G19920 Arabidopsis thaliana HOM05D003971 ORTHO05D004762 1.2e-112 411.4 364 51.4
COL.COLO4_37254 Corchorus olitorius HOM05D003971 ORTHO05D004762 4.5e-112 409.5 530 44.5
BcaC04g19398 Brassica carinata HOM05D003971 ORTHO05D004762 3.2e-110 403.3 353 51.8
Carub.0006s1829 Capsella rubella HOM05D003971 ORTHO05D004762 1.6e-109 401.0 385 49.1
C09p56130 Brassica napus HOM05D003971 ORTHO05D004762 2.7e-109 400.2 354 52.0
BolC9t58480H Brassica oleracea HOM05D003971 ORTHO05D004762 2.7e-109 400.2 354 52.0
HanXRQChr17g0565911 Helianthus annuus HOM05D003971 ORTHO05D004762 2.7e-109 400.2 316 62.3
Sp6g24460 Schrenkiella parvula HOM05D003971 ORTHO05D004762 1.0e-108 398.3 590 36.6
Aa31LG10G8100 Aethionema arabicum HOM05D003971 ORTHO05D004762 2.3e-108 397.1 347 52.7
BraA10t44057Z Brassica rapa HOM05D003971 ORTHO05D004762 6.7e-108 395.6 563 39.8
A10p19810 Brassica napus HOM05D003971 ORTHO05D004762 2.6e-107 393.7 563 39.6
BcaB08g36556 Brassica carinata HOM05D003971 ORTHO05D004762 5.7e-107 392.5 600 38.3
SEGI_10226 Sequoiadendron giganteum HOM05D003971 ORTHO05D004762 9.7e-107 391.7 280 61.4
Thhalv10013007m.g Eutrema salsugineum HOM05D003971 ORTHO05D004762 2.2e-106 390.6 585 38.8
RcHm_v2.0_Chr1g0373351 Rosa chinensis HOM05D003971 ORTHO05D004762 1.4e-105 387.9 311 59.2
CARHR192940 Cardamine hirsuta HOM05D003971 ORTHO05D004762 3.8e-103 379.8 299 55.9
A02p05920 Brassica napus HOM05D003971 ORTHO05D004762 3.2e-102 376.7 581 37.2
BraA02t05544Z Brassica rapa HOM05D003971 ORTHO05D004762 3.2e-102 376.7 581 37.2
BNapus_Darmor_BZH_scaffold_38p01950 Brassica napus HOM05D003971 ORTHO05D004762 8.0e-101 372.1 579 37.0
BolC2t06996H Brassica oleracea HOM05D003971 ORTHO05D004762 8.0e-101 372.1 579 37.0
HPP92_011657 Vanilla planifolia HOM05D003971 ORTHO05D004762 8.0e-101 372.1 228 73.7
AagrBONN_evm.TU.Sc2ySwM_117.1595 Anthoceros agrestis HOM05D003971 ORTHO05D004762 1.4e-100 371.3 351 49.3
Pp3c11_18210 Physcomitrium patens HOM05D003971 ORTHO05D004762 2.0e-99 367.5 413 46.7
Actinidia25522 Actinidia chinensis HOM05D000512 ORTHO05D004762 1.1e-94 351.7 396 51.0
Eucgr.L01129 Eucalyptus grandis HOM05D003971 ORTHO05D004762 4.1e-89 333.2 208 74.5
Eucgr.L01124 Eucalyptus grandis HOM05D003971 ORTHO05D004762 1.7e-87 327.8 208 73.1
Oeu061253.1 Olea europaea HOM05D003971 ORTHO05D004762 2.9e-87 327.0 363 53.2
CBR_g3752 Chara braunii HOM05D003971 ORTHO05D004762 1.4e-81 308.1 298 49.7
SGA_v2.0_scaffold74G24722 Striga asiatica HOM05D003971 ORTHO05D004762 2.3e-79 300.8 566 38.7
Dinv13723 Davidia involucrata HOM05D003971 ORTHO05D004762 2.0e-75 287.7 330 50.6
SalBow7G2108 Salvia bowleyana HOM05D003971 ORTHO05D004762 2.7e-64 250.8 583 35.2
Dinv23223 Davidia involucrata HOM05D003971 ORTHO05D004762 2.3e-60 237.7 274 52.6
CDE02G0369 Ceratophyllum demersum HOM05D003971 ORTHO05D004762 4.1e-57 226.9 577 33.3
Lalb_Chr12g0202501 Lupinus albus HOM05D003971 ORTHO05D004762 2.4e-49 201.1 166 57.2
HPP92_011707 Vanilla planifolia HOM05D003971 ORTHO05D004762 6.6e-47 193.0 353 38.8
Hma1.2p1_0664F.1_g199006 Hydrangea macrophylla HOM05D003971 ORTHO05D004762 3.1e-44 184.1 125 66.4
Solyc03g118210.3 Solanum lycopersicum HOM05D003971 ORTHO05D004762 1.7e-42 178.3 104 76.9
Oeu012846.1 Olea europaea HOM05D003971 ORTHO05D004433 2.4e-41 174.5 197 48.7
SMO334G0050 Selaginella moellendorffii HOM05D003971 ORTHO05D004762 6.0e-40 169.9 285 35.4
CSS0006697 Camellia sinensis var. sinensis HOM05D003971 ORTHO05D004762 4.4e-35 153.7 83 86.7
CSS0040784 Camellia sinensis var. sinensis HOM05D003971 ORTHO05D004762 8.7e-31 139.4 83 73.5
Dinv13722 Davidia involucrata HOM05D000475 ORTHO05D000343 6.4e-26 123.2 69 84.1
Dinv23224 Davidia involucrata HOM05D000475 ORTHO05D000343 8.4e-26 122.9 65 89.2
Lalb_Chr12g0202511 Lupinus albus HOM05D003971 ORTHO05D004762 7.9e-24 116.3 100 52.0
Os08g0511500 Oryza sativa ssp. japonica HOM05D003971 ORTHO05D004762 2.3e-23 114.8 94 56.4
CDE02G2184 Ceratophyllum demersum HOM05D003971 ORTHO05D004762 8.4e-18 96.3 282 31.2
Os03g0851600 Oryza sativa ssp. japonica HOM05D003971 ORTHO05D004762 1.9e-14 85.1 272 31.2
SEGI_28594 Sequoiadendron giganteum HOM05D003971 ORTHO05D004762 1.9e-09 68.6 288 26.4
Ah.11g046900 Amaranthus hybridus HOM05D003971 ORTHO05D004762 5.1e-07 60.5 202 29.7


User provided reference genes

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