Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen12g020650 Solanum pennellii HOM05D005869 ORTHO05D007229 2.9e-168 595.1 297 100.0
Solyc12g041880.2 Solanum lycopersicum HOM05D005869 ORTHO05D007229 8.8e-165 583.6 297 99.0
PGSC0003DMG400014477 Solanum tuberosum HOM05D005869 ORTHO05D007229 1.3e-160 569.7 300 96.0
Nitab4.5_0002899g0010 Nicotiana tabacum HOM05D005869 ORTHO05D007229 9.2e-138 493.8 297 83.2
Peaxi162Scf00128g01773 Petunia axillaris HOM05D005869 ORTHO05D007229 8.9e-125 450.7 273 83.9
Hma1.2p1_1834F.1_g304595 Hydrangea macrophylla HOM05D005869 ORTHO05D007229 7.8e-105 384.4 294 67.0
CSS0039203 Camellia sinensis var. sinensis HOM05D005869 ORTHO05D007229 6.2e-102 374.8 304 65.8
Cc11_g15130 Coffea canephora HOM05D005869 ORTHO05D007229 9.0e-101 370.9 279 67.7
GSVIVG01004938001 Vitis vinifera HOM05D005869 ORTHO05D007229 9.0e-101 370.9 295 64.4
Migut.K01077 Erythranthe guttata HOM05D005869 ORTHO05D007229 4.4e-100 368.6 293 65.9
Actinidia09599 Actinidia chinensis HOM05D005869 ORTHO05D007229 1.3e-99 367.1 279 68.5
TAR622G0237 Trochodendron aralioides HOM05D005869 ORTHO05D007229 1.7e-99 366.7 299 62.9
Potri.003G163800 Populus trichocarpa HOM05D005869 ORTHO05D007229 3.2e-98 362.5 296 64.9
TWI36G0175 Tripterygium wilfordii HOM05D005869 ORTHO05D007229 5.4e-98 361.7 299 62.9
PSO017G3988 Papaver somniferum HOM05D005869 ORTHO05D007229 2.7e-97 359.4 292 63.7
Ciclev10032244m.g Citrus clementina HOM05D005869 ORTHO05D007229 3.5e-97 359.0 298 64.1
Oeu044507.2 Olea europaea HOM05D005869 ORTHO05D007229 4.6e-97 358.6 299 62.5
Nn4g22166 Nelumbo nucifera HOM05D005869 ORTHO05D007229 6.6e-96 354.8 296 63.2
Potri.001G066000 Populus trichocarpa HOM05D005869 ORTHO05D007229 8.7e-96 354.4 291 64.9
Atru.chr11.2424 Acer truncatum HOM05D005869 ORTHO05D007229 1.5e-95 353.6 292 63.0
PSO478G4440 Papaver somniferum HOM05D005869 ORTHO05D007229 1.5e-95 353.6 288 62.8
BcaC06g35333 Brassica carinata HOM05D005869 ORTHO05D007229 4.3e-95 352.1 288 61.5
Gohir.D02G175000 Gossypium hirsutum HOM05D005869 ORTHO05D007229 4.3e-95 352.1 288 63.2
Gorai.005G196600 Gossypium raimondii HOM05D005869 ORTHO05D007229 7.3e-95 351.3 288 63.2
Sabra01G0045900 Salix brachista HOM05D005869 ORTHO05D007229 7.3e-95 351.3 296 64.2
Manes.08G102300 Manihot esculenta HOM05D005869 ORTHO05D007229 9.6e-95 350.9 293 62.8
RcHm_v2.0_Chr4g0429061 Rosa chinensis HOM05D005869 ORTHO05D007229 1.3e-94 350.5 293 61.4
Gohir.A03G152800 Gossypium hirsutum HOM05D005869 ORTHO05D007229 1.6e-94 350.1 288 62.5
FvH4_4g22830 Fragaria vesca HOM05D005869 ORTHO05D007229 4.8e-94 348.6 289 60.9
Duzib132G0160 Durio zibethinus HOM05D005869 ORTHO05D007229 8.1e-94 347.8 285 62.8
Rhsim12G0098100 Rhododendron simsii HOM05D005869 ORTHO05D007229 1.1e-93 347.4 312 63.8
A07p11480 Brassica napus HOM05D005869 ORTHO05D007229 5.3e-93 345.1 297 59.9
THA.LOC104820535 Tarenaya hassleriana HOM05D005869 ORTHO05D007229 6.9e-93 344.7 289 61.2
Thecc.02G194400 Theobroma cacao HOM05D005869 ORTHO05D007229 1.2e-92 344.0 288 61.5
CARHR027570 Cardamine hirsuta HOM05D005869 ORTHO05D007229 1.5e-92 343.6 290 61.7
Thhalv10008411m.g Eutrema salsugineum HOM05D005869 ORTHO05D007229 2.0e-92 343.2 288 61.5
Duzib052G0289 Durio zibethinus HOM05D005869 ORTHO05D007229 2.6e-92 342.8 278 64.0
Carub.0001s2653 Capsella rubella HOM05D005869 ORTHO05D007229 3.4e-92 342.4 284 61.6
vmacro16076 Vaccinium macrocarpon HOM05D005869 ORTHO05D007229 4.5e-92 342.0 314 61.5
Sp1g24290 Schrenkiella parvula HOM05D005869 ORTHO05D007229 1.3e-91 340.5 288 61.1
MSTRG.8047 Avicennia marina HOM05D005869 ORTHO05D007229 1.7e-91 340.1 291 60.5
Prupe.1G217100 Prunus persica HOM05D005869 ORTHO05D007229 1.7e-91 340.1 288 61.1
C07p17290 Brassica napus HOM05D005869 ORTHO05D007229 2.2e-91 339.7 288 60.4
Glyma.13G264200 Glycine max HOM05D005869 ORTHO05D007229 6.4e-91 338.2 297 60.3
BraA07t28937Z Brassica rapa HOM05D005869 ORTHO05D007229 1.1e-90 337.4 306 58.2
AT1G28100 Arabidopsis thaliana HOM05D005869 ORTHO05D007229 3.2e-90 335.9 288 60.4
CiPaw.05G102600 Carya illinoinensis HOM05D005869 ORTHO05D007229 5.4e-90 335.1 318 57.2
AL1G41620 Arabidopsis lyrata HOM05D005869 ORTHO05D007229 1.2e-89 334.0 288 60.4
MD13G1129300 Malus domestica HOM05D005869 ORTHO05D007229 1.2e-89 334.0 293 60.4
Phvul.005G075700 Phaseolus vulgaris HOM05D005869 ORTHO05D007229 2.1e-89 333.2 287 59.2
Aqoxy5G03171 Aquilegia oxysepala HOM05D005869 ORTHO05D007229 4.6e-89 332.0 282 59.6
BolC7t42232H Brassica oleracea HOM05D005869 ORTHO05D007229 1.0e-88 330.9 297 58.2
MD16G1129300 Malus domestica HOM05D005869 ORTHO05D007229 5.1e-88 328.6 287 61.0
arahy.Tifrunner.gnm1.ann1.WRPQ8T Arachis hypogaea HOM05D005869 ORTHO05D007229 4.3e-87 325.5 295 60.0
arahy.Tifrunner.gnm1.ann1.3C70LE Arachis hypogaea HOM05D005869 ORTHO05D007229 9.6e-87 324.3 295 60.0
EL10Ac6g13596 Beta vulgaris HOM05D005869 ORTHO05D007229 8.1e-86 321.2 285 57.2
Lj3g0004461 Lotus japonicus HOM05D005869 ORTHO05D007229 1.8e-85 320.1 292 57.5
CDE05G0434 Ceratophyllum demersum HOM05D005869 ORTHO05D007229 3.1e-85 319.3 289 57.4
Eucgr.B03550 Eucalyptus grandis HOM05D005869 ORTHO05D007229 9.0e-85 317.8 272 62.1
BcaB07g32415 Brassica carinata HOM05D005869 ORTHO05D007229 1.5e-84 317.0 282 59.6
Psat1g007680 Pisum sativum HOM05D005869 ORTHO05D007229 2.0e-84 316.6 288 57.3
CsaV3_4G002340 Cucumis sativus L. HOM05D005869 ORTHO05D007229 2.6e-84 316.2 291 58.1
PGR102G3220 Punica granatum HOM05D005869 ORTHO05D007229 7.6e-84 314.7 285 57.9
TPR.G35001 Trifolium pratense HOM05D005869 ORTHO05D007229 7.6e-84 314.7 287 59.2
A09p37960 Brassica napus HOM05D005869 ORTHO05D007229 9.9e-84 314.3 293 56.7
BraA09t39308Z Brassica rapa HOM05D005869 ORTHO05D007229 9.9e-84 314.3 310 54.5
Lalb_Chr25g0285611 Lupinus albus HOM05D005869 ORTHO05D007229 9.9e-84 314.3 297 56.6
MELO3C017808.2 Cucumis melo HOM05D005869 ORTHO05D007229 6.4e-83 311.6 291 57.0
Medtr2g072940 Medicago truncatula HOM05D005869 ORTHO05D007229 6.4e-83 311.6 287 60.3
C05p26800 Brassica napus HOM05D005869 ORTHO05D007229 1.4e-82 310.5 303 55.4
Sed0007329 Sechium edule HOM05D005869 ORTHO05D007229 1.2e-81 307.4 295 55.3
ClCG07G011870 Citrullus lanatus HOM05D005869 ORTHO05D007229 6.0e-81 305.1 293 54.6
VMungo1080G1469 Vigna mungo HOM05D005869 ORTHO05D007229 1.0e-80 304.3 274 59.1
Zm00001eb044420 Zea mays HOM05D005869 ORTHO05D007229 3.9e-80 302.4 290 55.2
BcaC05g26814 Brassica carinata HOM05D005869 ORTHO05D007229 8.7e-80 301.2 269 59.1
ECA233G2015 Erigeron canadensis HOM05D005869 ORTHO05D007229 2.5e-79 299.7 299 54.5
ATR0829G022 Amborella trichopoda HOM05D005869 ORTHO05D007229 3.3e-79 299.3 291 53.6
Ah.03g135600 Amaranthus hybridus HOM05D005869 ORTHO05D007229 5.6e-79 298.5 293 53.2
BolC5t31401H Brassica oleracea HOM05D005869 ORTHO05D007229 1.6e-78 297.0 278 57.2
Manes.09G187100 Manihot esculenta HOM05D005869 ORTHO05D007229 2.1e-78 296.6 218 66.5
HanXRQChr08g0210441 Helianthus annuus HOM05D005869 ORTHO05D007229 4.0e-77 292.4 295 54.2
HPP92_000723 Vanilla planifolia HOM05D005869 ORTHO05D007229 4.0e-77 292.4 276 56.9
Nitab4.5_0000608g0060 Nicotiana tabacum HOM05D005869 ORTHO05D007229 6.9e-77 291.6 190 78.9
HanXRQChr12g0363371 Helianthus annuus HOM05D005869 ORTHO05D007229 1.3e-75 287.3 295 53.2
Lj6A836G36 Lonicera japonica HOM05D005869 ORTHO05D007229 6.7e-72 275.0 290 54.5
Aa31sc1106G20 Aethionema arabicum HOM05D005869 ORTHO05D007229 6.3e-70 268.5 343 45.2
Pp3c14_12070 Physcomitrium patens HOM05D005869 ORTHO05D007229 6.1e-65 251.9 280 49.3
CANSAT01G1948 Cannabis sativa HOM05D005869 ORTHO05D007229 3.9e-64 249.2 248 54.0
Sed0028093 Sechium edule HOM05D005869 ORTHO05D007229 1.1e-63 247.7 310 47.7
MBI11_g11870_MAGBIO Magnolia biondii HOM05D000422 ORTHO05D001248 4.3e-63 245.7 297 47.8
Cpa.g.sc498.3 Carica papaya HOM05D005869 ORTHO05D007229 1.3e-62 244.2 173 69.4
BcaB03g13954 Brassica carinata HOM05D005869 ORTHO05D007229 2.8e-62 243.0 174 67.2
QL03p049767 Quercus lobata HOM05D005869 ORTHO05D007229 3.7e-62 242.7 174 70.1
HanXRQChr08g0210391 Helianthus annuus HOM05D005869 ORTHO05D007229 4.1e-61 239.2 293 48.1
AagrBONN_evm.TU.Sc2ySwM_368.1764 Anthoceros agrestis HOM05D005869 ORTHO05D007229 1.9e-58 230.3 296 46.3
Mapoly0153s0008 Marchantia polymorpha HOM05D005869 ORTHO05D007229 3.2e-58 229.6 280 46.1
Migut.K01075 Erythranthe guttata HOM05D005869 ORTHO05D007229 1.4e-56 224.2 304 44.4
SGA_v2.0_scaffold201G41354 Striga asiatica HOM05D005869 ORTHO05D007229 1.4e-56 224.2 298 48.0
Migut.K01074 Erythranthe guttata HOM05D005869 ORTHO05D007229 1.8e-56 223.8 166 65.7
Haze_12488 Corylus avellana HOM05D005869 ORTHO05D007229 1.1e-55 221.1 279 49.1
Sabra03G0119100 Salix brachista HOM05D005869 ORTHO05D007229 5.7e-55 218.8 149 73.8
Oeu019435.1 Olea europaea HOM05D005869 ORTHO05D007229 8.2e-54 214.9 279 48.4
MSTRG.8048 Avicennia marina HOM05D005869 ORTHO05D007229 1.9e-50 203.8 283 43.8
Sc04g0000040 Simmondsia chinensis HOM05D005869 ORTHO05D007229 7.2e-50 201.8 119 79.8
Sc04g0000100 Simmondsia chinensis HOM05D005869 ORTHO05D007229 7.2e-50 201.8 119 79.8
SalBow7G3994 Salvia bowleyana HOM05D005869 ORTHO05D007229 3.0e-48 196.4 304 44.4
SalBow2G1918 Salvia bowleyana HOM05D005869 ORTHO05D007229 6.7e-48 195.3 322 42.9
AUR62005704 Chenopodium quinoa HOM05D005869 ORTHO05D007229 9.7e-47 191.4 274 43.8
MCO09G131 Micromonas commoda HOM05D005869 ORTHO05D007229 4.1e-45 186.0 293 39.2
BcaC05g26813 Brassica carinata HOM05D005869 ORTHO05D007229 3.5e-44 183.0 105 82.9
Cre03.g194450 Chlamydomonas reinhardtii HOM05D005869 ORTHO05D007229 1.7e-43 180.6 295 39.0
Dinv19137 Davidia involucrata HOM05D005869 ORTHO05D007229 4.2e-42 176.0 176 55.1
Hund16126 Selenicereus undatus HOM05D005869 ORTHO05D007229 7.2e-42 175.3 218 49.1
PRCOL_00000815 Prasinoderma coloniale HOM05D005869 ORTHO05D007229 6.1e-41 172.2 291 36.4
Os10g0499600 Oryza sativa ssp. japonica HOM05D005869 ORTHO05D007229 8.0e-41 171.8 104 75.0
FAN12G1770 Fragaria x ananassa HOM05D000001 ORTHO05D010470 2.3e-40 170.2 324 36.1
FAN07G2435 Fragaria x ananassa HOM05D000001 ORTHO05D010470 1.5e-39 167.5 325 36.3
FAN17G1058 Fragaria x ananassa HOM05D000001 ORTHO05D010470 3.7e-38 162.9 325 36.0
Migut.O00624 Erythranthe guttata HOM05D005869 ORTHO05D007229 1.4e-37 161.0 210 44.8
Migut.K01072 Erythranthe guttata HOM05D005869 ORTHO05D007229 9.1e-37 158.3 116 62.9
CBR_g3946 Chara braunii HOM05D005869 ORTHO05D007229 2.0e-36 157.1 300 35.0
SMO115G0111 Selaginella moellendorffii HOM05D005869 ORTHO05D007229 3.5e-36 156.4 95 78.9
Lsat_1_v5_gn_4_151180 Lactuca sativa HOM05D005869 ORTHO05D007229 2.3e-32 143.7 229 39.3
unitig_26.g10430 Utricularia gibba HOM05D005869 ORTHO05D007229 1.6e-28 131.0 204 42.2
COL.COLO4_06415 Corchorus olitorius HOM05D005869 ORTHO05D007229 5.9e-28 129.0 156 48.7
QL03p049770 Quercus lobata HOM05D005869 ORTHO05D007229 2.9e-27 126.7 118 61.0
Migut.K01076 Erythranthe guttata HOM05D005869 ORTHO05D007229 2.1e-25 120.6 102 57.8
Ca_03922_v3 Cicer arietinum L. HOM05D005869 ORTHO05D007229 3.6e-25 119.8 157 44.6
Sc04g0000090 Simmondsia chinensis HOM05D005869 ORTHO05D007229 3.0e-24 116.7 140 44.3
Sc04g0000050 Simmondsia chinensis HOM05D005869 ORTHO05D007229 4.0e-24 116.3 144 45.8
Actinidia34002 Actinidia chinensis HOM05D005869 ORTHO05D007229 4.5e-20 102.8 55 85.5
Hund16125 Selenicereus undatus HOM05D005869 ORTHO05D007229 1.0e-16 91.7 50 84.0
Glyma.12G234900 Glycine max HOM05D005869 ORTHO05D007229 3.5e-12 76.6 43 79.1
Migut.K01073 Erythranthe guttata HOM05D005869 ORTHO05D007229 8.6e-11 72.0 107 38.3
arahy.Tifrunner.gnm1.ann1.6GV0UE Arachis hypogaea HOM05D001662 ORTHO05D005318 1.8e-08 64.3 71 47.9
COL.COLO4_06414 Corchorus olitorius HOM05D005869 ORTHO05D007229 5.2e-08 62.8 64 50.0
Pp3c14_11090 Physcomitrium patens HOM05D005869 ORTHO05D007229 4.4e-07 59.7 107 36.4
SEGI_05009 Sequoiadendron giganteum HOM05D005869 ORTHO05D007229 1.7e-06 57.8 98 39.8
arahy.Tifrunner.gnm1.ann1.G1CRI5 Arachis hypogaea HOM05D000992 ORTHO05D001928 3.7e-06 56.6 62 50.0
arahy.Tifrunner.gnm1.ann1.KDZ9D9 Arachis hypogaea HOM05D005557 ORTHO05D001928 4.9e-06 56.2 60 51.7
arahy.Tifrunner.gnm1.ann1.B62L7G Arachis hypogaea HOM05D000992 ORTHO05D001928 8.3e-06 55.5 50 60.0


User provided reference genes

Program Settings