Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen12g020080 Solanum pennellii HOM05D002209 ORTHO05D004761 1.2e-141 506.5 263 100.0
Solyc12g040480.2 Solanum lycopersicum HOM05D002209 ORTHO05D004761 8.8e-84 314.3 168 96.4
Nitab4.5_0000150g0110 Nicotiana tabacum HOM05D002209 ORTHO05D004761 7.5e-67 258.1 160 81.9
Peaxi162Scf01127g00030 Petunia axillaris HOM05D002209 ORTHO05D004761 5.4e-65 251.9 161 78.3
PGSC0003DMG400015822 Solanum tuberosum HOM05D002209 ORTHO05D004761 7.0e-65 251.5 138 94.2
Nitab4.5_0001158g0020 Nicotiana tabacum HOM05D002209 ORTHO05D004761 5.7e-59 231.9 160 71.2
PGSC0003DMG402005658 Solanum tuberosum HOM05D002209 ORTHO05D004761 7.5e-59 231.5 222 59.5
Sopen03g037920 Solanum pennellii HOM05D002209 ORTHO05D004761 1.1e-57 227.6 222 57.2
Nitab4.5_0012395g0010 Nicotiana tabacum HOM05D002209 ORTHO05D004761 4.1e-57 225.7 141 80.9
CAN.G1129.31 Capsicum annuum HOM05D002209 ORTHO05D004761 5.4e-57 225.3 222 56.8
Nitab4.5_0012369g0030 Nicotiana tabacum HOM05D002209 ORTHO05D004761 1.2e-56 224.2 222 55.9
Solyc03g119030.4 Solanum lycopersicum HOM05D002209 ORTHO05D004761 1.6e-56 223.8 222 57.2
Peaxi162Scf00683g00231 Petunia axillaris HOM05D002209 ORTHO05D004761 1.9e-54 216.9 220 56.4
Dinv29939 Davidia involucrata HOM05D002209 ORTHO05D004761 1.5e-51 207.2 156 62.8
Dinv24643 Davidia involucrata HOM05D002209 ORTHO05D004761 2.0e-51 206.8 156 62.8
CSS0038011 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 2.7e-48 196.4 161 59.6
CSS0040553 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 1.7e-47 193.7 161 59.0
Actinidia35110 Actinidia chinensis HOM05D002209 ORTHO05D004761 2.3e-47 193.4 156 58.3
Rhsim07G0079200 Rhododendron simsii HOM05D002209 ORTHO05D004761 3.9e-47 192.6 161 58.4
RhsimUnG0064800 Rhododendron simsii HOM05D002209 ORTHO05D004761 5.0e-47 192.2 161 57.8
CSS0032919 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 4.3e-46 189.1 155 59.4
CSS0009925 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 7.3e-46 188.3 155 58.7
SalBow1G1036 Salvia bowleyana HOM05D002209 ORTHO05D004761 4.0e-44 182.6 160 57.5
MSTRG.4560 Avicennia marina HOM05D002209 ORTHO05D004761 6.8e-44 181.8 162 58.6
SGA_v2.0_scaffold171G38932 Striga asiatica HOM05D002209 ORTHO05D004761 1.2e-43 181.0 168 54.8
MSTRG.9285 Avicennia marina HOM05D002209 ORTHO05D004761 2.6e-43 179.9 192 52.1
TAR629G1642 Trochodendron aralioides HOM05D002209 ORTHO05D004761 1.1e-41 174.5 159 52.8
Gohir.A09G051300 Gossypium hirsutum HOM05D002209 ORTHO05D004761 2.4e-41 173.3 161 53.4
QL10p027517 Quercus lobata HOM05D002209 ORTHO05D004761 2.4e-41 173.3 160 53.8
Gorai.006G057200 Gossypium raimondii HOM05D002209 ORTHO05D004761 3.2e-41 172.9 161 53.4
Gohir.D09G052400 Gossypium hirsutum HOM05D002209 ORTHO05D004761 4.1e-41 172.6 161 53.4
Ciclev10008707m.g Citrus clementina HOM05D002209 ORTHO05D004761 2.1e-40 170.2 161 54.7
TWI81G0085 Tripterygium wilfordii HOM05D002209 ORTHO05D004761 2.1e-40 170.2 156 55.1
COL.COLO4_05870 Corchorus olitorius HOM05D002209 ORTHO05D004761 3.5e-40 169.5 161 53.4
vmacro16528 Vaccinium macrocarpon HOM05D002209 ORTHO05D004761 3.5e-40 169.5 222 46.4
Cc04_g06630 Coffea canephora HOM05D002209 ORTHO05D004761 1.7e-39 167.2 156 55.1
CANSAT80G1163 Cannabis sativa HOM05D002209 ORTHO05D004761 2.3e-39 166.8 156 48.1
CANSAT80G2224 Cannabis sativa HOM05D002209 ORTHO05D004761 2.3e-39 166.8 156 48.1
Duzib205G0470 Durio zibethinus HOM05D002209 ORTHO05D004761 3.0e-39 166.4 161 50.3
TAR622G1360 Trochodendron aralioides HOM05D002209 ORTHO05D004761 3.0e-39 166.4 164 50.0
DCAR_011382 Daucus carota HOM05D002209 ORTHO05D004761 3.9e-39 166.0 157 52.2
Thecc.03G048800 Theobroma cacao HOM05D002209 ORTHO05D004761 5.1e-39 165.6 161 50.9
Lj9A421T102 Lonicera japonica HOM05D002209 ORTHO05D004761 8.6e-39 164.9 156 52.6
Eucgr.B00855 Eucalyptus grandis HOM05D002209 ORTHO05D004761 2.5e-38 163.3 161 48.4
Potri.012G049700 Populus trichocarpa HOM05D002209 ORTHO05D004761 9.5e-38 161.4 158 53.2
Sed0007305 Sechium edule HOM05D002209 ORTHO05D004761 2.8e-37 159.8 223 42.6
HanXRQChr05g0144521 Helianthus annuus HOM05D002209 ORTHO05D004761 6.2e-37 158.7 161 51.6
Lj4g0012439 Lotus japonicus HOM05D002209 ORTHO05D004761 6.2e-37 158.7 161 49.7
VMungo0251G1482 Vigna mungo HOM05D002209 ORTHO05D004761 6.2e-37 158.7 156 50.0
CsaV3_1G004130 Cucumis sativus L. HOM05D002209 ORTHO05D004761 8.1e-37 158.3 163 49.7
Migut.D01447 Erythranthe guttata HOM05D002209 ORTHO05D004761 8.1e-37 158.3 157 51.0
Sabra15G0063000 Salix brachista HOM05D002209 ORTHO05D004761 1.1e-36 157.9 158 53.8
AUR62040790 Chenopodium quinoa HOM05D002209 ORTHO05D004761 1.4e-36 157.5 157 47.1
Manes.06G008500 Manihot esculenta HOM05D002209 ORTHO05D004761 1.4e-36 157.5 162 49.4
GSVIVG01008387001 Vitis vinifera HOM05D002209 ORTHO05D004761 1.4e-36 157.5 157 50.3
GSVIVG01008394001 Vitis vinifera HOM05D002209 ORTHO05D004761 1.4e-36 157.5 157 50.3
Glyma.05G243700 Glycine max HOM05D002209 ORTHO05D004761 1.8e-36 157.1 156 49.4
Potri.015G041700 Populus trichocarpa HOM05D002209 ORTHO05D004761 1.8e-36 157.1 158 52.5
MD00G1160600 Malus domestica HOM05D002209 ORTHO05D004761 2.4e-36 156.8 156 48.7
PGR083G2774 Punica granatum HOM05D002209 ORTHO05D004761 2.4e-36 156.8 232 41.4
Nn3g18057 Nelumbo nucifera HOM05D002209 ORTHO05D004761 3.1e-36 156.4 157 50.3
Oeu017505.1 Olea europaea HOM05D002209 ORTHO05D004761 4.0e-36 156.0 139 59.7
Phvul.002G327400 Phaseolus vulgaris HOM05D002209 ORTHO05D004761 4.0e-36 156.0 156 48.7
Hma1.2p1_0669F.1_g200340 Hydrangea macrophylla HOM05D002209 ORTHO05D004761 6.8e-36 155.2 163 47.9
Atru.chr9.949 Acer truncatum HOM05D002209 ORTHO05D004761 8.9e-36 154.8 233 43.3
Oeu053224.1 Olea europaea HOM05D002209 ORTHO05D004761 8.9e-36 154.8 135 61.5
AUR62002654 Chenopodium quinoa HOM05D002209 ORTHO05D004761 1.2e-35 154.5 157 46.5
Sabra15G0055400 Salix brachista HOM05D002209 ORTHO05D004761 1.2e-35 154.5 158 52.5
Lalb_Chr16g0387141 Lupinus albus HOM05D002209 ORTHO05D004761 1.5e-35 154.1 161 49.7
EL10Ac8g19603 Beta vulgaris HOM05D002209 ORTHO05D004761 3.4e-35 152.9 157 45.9
Glyma.08G051500 Glycine max HOM05D002209 ORTHO05D004761 4.4e-35 152.5 158 48.1
Duzib084G0729 Durio zibethinus HOM05D002209 ORTHO05D004761 9.9e-35 151.4 161 48.4
Sc12g0007380 Simmondsia chinensis HOM05D002209 ORTHO05D004761 9.9e-35 151.4 156 48.1
FAN18G1515 Fragaria x ananassa HOM05D002209 ORTHO05D004761 1.7e-34 150.6 161 50.3
MBI16_g47222_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 2.2e-34 150.2 160 50.0
Cpa.g.sc3.426 Carica papaya HOM05D002209 ORTHO05D004761 2.9e-34 149.8 160 45.6
Nn4g24077 Nelumbo nucifera HOM05D002209 ORTHO05D004761 2.9e-34 149.8 157 47.8
RcHm_v2.0_Chr7g0178801 Rosa chinensis HOM05D002209 ORTHO05D004761 2.9e-34 149.8 161 49.1
CiPaw.16G090800 Carya illinoinensis HOM05D002209 ORTHO05D004761 6.4e-34 148.7 156 48.1
unitig_0.g802 Utricularia gibba HOM05D002209 ORTHO05D004761 6.4e-34 148.7 161 46.6
MBI10_g07297_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 8.4e-34 148.3 157 48.4
FAN08G3349 Fragaria x ananassa HOM05D002209 ORTHO05D004761 1.1e-33 147.9 161 50.3
Prupe.5G229900 Prunus persica HOM05D002209 ORTHO05D004761 1.9e-33 147.1 161 49.1
FvH4_5g17050 Fragaria vesca HOM05D002209 ORTHO05D004761 3.2e-33 146.4 161 49.1
TPR.G12929 Trifolium pratense HOM05D002209 ORTHO05D004761 4.1e-33 146.0 161 46.6
THA.LOC104821836 Tarenaya hassleriana HOM05D002209 ORTHO05D004761 5.4e-33 145.6 162 47.5
AT1G48635 Arabidopsis thaliana HOM05D002209 ORTHO05D004761 9.2e-33 144.8 157 48.4
MD14G1233700 Malus domestica HOM05D002209 ORTHO05D004761 1.2e-32 144.4 160 45.0
arahy.Tifrunner.gnm1.ann1.6WJC3X Arachis hypogaea HOM05D002209 ORTHO05D004761 4.6e-32 142.5 156 44.9
A06p04280 Brassica napus HOM05D002209 ORTHO05D004761 1.0e-31 141.4 156 46.8
Lsat_1_v5_gn_3_1001 Lactuca sativa HOM05D002209 ORTHO05D004761 1.3e-31 141.0 187 44.9
Lalb_Chr09g0330521 Lupinus albus HOM05D002209 ORTHO05D004761 1.3e-31 141.0 161 47.2
Haze_18790 Corylus avellana HOM05D002209 ORTHO05D004761 1.7e-31 140.6 144 49.3
Aqoxy3G03975 Aquilegia oxysepala HOM05D002209 ORTHO05D004761 2.3e-31 140.2 160 43.8
BraA06t23631Z Brassica rapa HOM05D002209 ORTHO05D004761 2.3e-31 140.2 156 46.8
THA.LOC104820369 Tarenaya hassleriana HOM05D002209 ORTHO05D004761 5.1e-31 139.0 159 47.2
FAN13G0599 Fragaria x ananassa HOM05D002209 ORTHO05D004761 6.6e-31 138.7 154 49.4
Aa31LG10G5170 Aethionema arabicum HOM05D003754 ORTHO05D004530 8.7e-31 138.3 159 46.5
AL1G55300 Arabidopsis lyrata HOM05D002209 ORTHO05D004761 8.7e-31 138.3 157 47.1
ClCG06G014470 Citrullus lanatus HOM05D002209 ORTHO05D004761 1.5e-30 137.5 161 46.0
Medtr8g106780 Medicago truncatula HOM05D002209 ORTHO05D004761 1.9e-30 137.1 161 44.1
BcaB07g33725 Brassica carinata HOM05D002209 ORTHO05D004761 2.5e-30 136.7 156 45.5
Thhalv10011573m.g Eutrema salsugineum HOM05D002209 ORTHO05D004761 3.3e-30 136.3 158 46.8
Lalb_Chr05g0221871 Lupinus albus HOM05D002209 ORTHO05D004761 4.3e-30 136.0 162 46.3
Carub.0001s3778 Capsella rubella HOM05D002209 ORTHO05D004761 5.6e-30 135.6 157 43.9
BolC6t35461H Brassica oleracea HOM05D002209 ORTHO05D004761 7.3e-30 135.2 156 44.2
Psat7g003880 Pisum sativum HOM05D002209 ORTHO05D004761 7.3e-30 135.2 158 46.8
Sp1g35610 Schrenkiella parvula HOM05D002209 ORTHO05D004761 7.3e-30 135.2 156 44.9
BcaC08g43072 Brassica carinata HOM05D002209 ORTHO05D004761 2.8e-29 133.3 156 44.2
C06p03290 Brassica napus HOM05D002209 ORTHO05D004761 2.8e-29 133.3 156 44.2
CARHR038280 Cardamine hirsuta HOM05D002209 ORTHO05D004761 6.2e-29 132.1 157 43.9
ECA246G4025 Erigeron canadensis HOM05D002209 ORTHO05D004761 5.2e-28 129.0 149 49.0
MBI16_g47372_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 4.4e-27 125.9 160 44.4
AL3G31330 Arabidopsis lyrata HOM05D002209 ORTHO05D004761 1.3e-26 124.4 156 42.9
PSO782G2563 Papaver somniferum HOM05D002209 ORTHO05D004761 3.8e-26 122.9 162 41.4
A03p40560 Brassica napus HOM05D002209 ORTHO05D004761 4.9e-26 122.5 157 42.7
HPP92_008203 Vanilla planifolia HOM05D002209 ORTHO05D004761 6.4e-26 122.1 161 41.0
Carub.0003s1787 Capsella rubella HOM05D002209 ORTHO05D004761 8.4e-26 121.7 156 41.7
Sp3g16270 Schrenkiella parvula HOM05D002209 ORTHO05D004761 8.4e-26 121.7 157 42.7
PSO063G7528 Papaver somniferum HOM05D002209 ORTHO05D004761 1.1e-25 121.3 162 40.7
BraA03t13213Z Brassica rapa HOM05D002209 ORTHO05D004761 2.4e-25 120.2 158 42.4
AT3G18160 Arabidopsis thaliana HOM05D002209 ORTHO05D004761 4.2e-25 119.4 156 41.0
BcaB04g18980 Brassica carinata HOM05D002209 ORTHO05D004761 4.2e-25 119.4 159 40.9
BcaC01g03707 Brassica carinata HOM05D002209 ORTHO05D004761 4.2e-25 119.4 159 42.8
Zm00001eb098030 Zea mays HOM05D002209 ORTHO05D004761 4.2e-25 119.4 188 38.3
BolC3t17231H Brassica oleracea HOM05D002209 ORTHO05D004761 7.1e-25 118.6 159 42.1
Ca_17220_v3 Cicer arietinum L. HOM05D002209 ORTHO05D004761 9.3e-25 118.2 146 46.6
BcaB04g20791 Brassica carinata HOM05D002209 ORTHO05D004761 1.2e-24 117.9 157 41.4
CARHR093480 Cardamine hirsuta HOM05D002209 ORTHO05D004761 2.1e-24 117.1 156 39.1
ATR0326G049 Amborella trichopoda HOM05D002209 ORTHO05D004761 7.8e-24 115.2 163 38.7
BcaC09g48771 Brassica carinata HOM05D002209 ORTHO05D004761 1.0e-23 114.8 156 41.0
Hund22655 Selenicereus undatus HOM05D002209 ORTHO05D004761 1.7e-23 114.0 151 41.7
Aa31LG8G4990 Aethionema arabicum HOM05D002209 ORTHO05D004761 1.9e-22 110.5 146 40.4
C03p49370 Brassica napus HOM05D002209 ORTHO05D004761 1.9e-22 110.5 169 39.6
SHI19025 Sapria himalayana HOM05D002209 ORTHO05D000001 5.6e-22 109.0 161 41.6
A01p36240 Brassica napus HOM05D002209 ORTHO05D007926 2.0e-19 100.5 146 39.7
BolC1t04568H Brassica oleracea HOM05D002209 ORTHO05D007926 2.0e-19 100.5 146 39.7
BraA01t03699Z Brassica rapa HOM05D002209 ORTHO05D007926 2.0e-19 100.5 146 39.7
C01p46070 Brassica napus HOM05D002209 ORTHO05D007926 3.4e-19 99.8 146 39.7
CDE02G4061 Ceratophyllum demersum HOM05D002209 ORTHO05D004761 3.4e-19 99.8 156 35.9
Thhalv10020989m.g Eutrema salsugineum HOM05D002209 ORTHO05D004761 7.6e-19 98.6 156 37.2
Mapoly0003s0191 Marchantia polymorpha HOM05D002209 ORTHO05D004761 7.6e-19 98.6 167 34.1
PGSC0003DMG400043837 Solanum tuberosum HOM05D003150 ORTHO05D003532 1.7e-18 97.4 78 71.8
CSS0016222 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 3.2e-17 93.2 105 49.5
SEGI_04696 Sequoiadendron giganteum HOM05D002209 ORTHO05D004761 7.1e-17 92.0 170 34.7
Duzib068G1457 Durio zibethinus HOM05D002209 ORTHO05D004761 2.1e-16 90.5 143 37.8
Sed0027899 Sechium edule HOM05D002209 ORTHO05D004761 8.7e-15 85.1 76 52.6
Pp3c8_16550 Physcomitrium patens HOM05D002209 ORTHO05D004761 9.6e-14 81.6 166 31.9
Psat0s3278g0200 Pisum sativum HOM05D002209 ORTHO05D004761 9.6e-14 81.6 101 45.5
MELO3C017339.2 Cucumis melo HOM05D002209 ORTHO05D004761 1.6e-13 80.9 84 46.4
PGSC0003DMG400044411 Solanum tuberosum HOM05D003150 ORTHO05D003532 4.8e-13 79.3 78 61.5
AagrBONN_evm.TU.Sc2ySwM_344.1865 Anthoceros agrestis HOM05D002209 ORTHO05D004761 1.1e-12 78.2 218 29.4
CBR_g38112 Chara braunii HOM05D002209 ORTHO05D004761 1.1e-12 78.2 166 30.7
Pp3c24_12050 Physcomitrium patens HOM05D002209 ORTHO05D004761 1.1e-12 78.2 170 30.0
Pp3c20_5170 Physcomitrium patens HOM05D002209 ORTHO05D004761 4.0e-12 76.3 181 29.8
PGSC0003DMG400026773 Solanum tuberosum HOM05D003150 ORTHO05D003532 6.9e-12 75.5 78 62.8
PGSC0003DMG400046013 Solanum tuberosum HOM05D003150 ORTHO05D003532 5.8e-11 72.4 78 59.0
PGSC0003DMG400044226 Solanum tuberosum HOM05D003150 ORTHO05D003532 2.2e-10 70.5 78 60.3
PGSC0003DMG400044155 Solanum tuberosum HOM05D003150 ORTHO05D003532 4.2e-09 66.2 77 59.7
SMO367G0254 Selaginella moellendorffii HOM05D002209 ORTHO05D004761 2.7e-08 63.5 158 28.5
PGSC0003DMG400047275 Solanum tuberosum HOM05D003150 ORTHO05D003532 1.1e-06 58.2 60 58.3
PGSC0003DMG400046250 Solanum tuberosum HOM05D003150 ORTHO05D003532 4.3e-06 56.2 76 50.0


User provided reference genes

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