Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen12g019010 Solanum pennellii HOM05D005513 ORTHO05D006848 3.6e-180 634.8 318 100.0
PGSC0003DMG400004444 Solanum tuberosum HOM05D005513 ORTHO05D006848 3.7e-169 598.2 317 94.6
CAN.G575.118 Capsicum annuum HOM05D005513 ORTHO05D006848 3.7e-161 571.6 318 89.3
CAN.G2177.12 Capsicum annuum HOM05D005513 ORTHO05D006848 1.6e-159 566.2 318 88.7
Nitab4.5_0001936g0090 Nicotiana tabacum HOM05D005513 ORTHO05D006848 1.7e-158 562.8 318 87.7
CAN.G1579.15 Capsicum annuum HOM05D005513 ORTHO05D006848 1.1e-157 560.1 318 88.1
Nitab4.5_0008882g0020 Nicotiana tabacum HOM05D005513 ORTHO05D006848 1.4e-155 553.1 318 85.8
Peaxi162Scf00544g00118 Petunia axillaris HOM05D005513 ORTHO05D006848 1.6e-151 539.7 318 84.6
CAN.G575.103 Capsicum annuum HOM05D005513 ORTHO05D006848 4.5e-151 538.1 317 85.2
Peaxi162Scf00544g00117 Petunia axillaris HOM05D005513 ORTHO05D006848 6.1e-148 527.7 316 82.9
SalBow3G2273 Salvia bowleyana HOM05D005513 ORTHO05D006848 5.0e-142 508.1 320 78.8
Actinidia11441 Actinidia chinensis HOM05D005513 ORTHO05D006848 1.2e-140 503.4 330 77.6
CSS0036954 Camellia sinensis var. sinensis HOM05D005513 ORTHO05D006848 2.1e-140 502.7 318 78.0
Migut.F01838 Erythranthe guttata HOM05D005513 ORTHO05D006848 2.3e-139 499.2 320 77.5
CAN.G2107.3 Capsicum annuum HOM05D005513 ORTHO05D006848 3.0e-139 498.8 280 88.6
Manes.05G132000 Manihot esculenta HOM05D005513 ORTHO05D006848 1.2e-138 496.9 301 80.4
Cc09_g04220 Coffea canephora HOM05D005513 ORTHO05D006848 3.4e-138 495.4 307 80.5
Thecc.04G162400 Theobroma cacao HOM05D005513 ORTHO05D006848 5.8e-138 494.6 318 78.3
Gohir.D10G121000 Gossypium hirsutum HOM05D005513 ORTHO05D006848 7.5e-138 494.2 318 77.7
Gorai.011G132900 Gossypium raimondii HOM05D005513 ORTHO05D006848 7.5e-138 494.2 318 77.7
Nn7g37504 Nelumbo nucifera HOM05D005513 ORTHO05D006848 4.9e-137 491.5 318 77.0
COL.COLO4_08197 Corchorus olitorius HOM05D005513 ORTHO05D006848 6.4e-137 491.1 322 77.3
Gohir.A10G146000 Gossypium hirsutum HOM05D005513 ORTHO05D006848 6.4e-137 491.1 318 77.0
Cpa.g.sc343.3 Carica papaya HOM05D005513 ORTHO05D006848 1.1e-136 490.3 301 80.1
GSVIVG01038190001 Vitis vinifera HOM05D005513 ORTHO05D006848 1.4e-136 490.0 318 77.4
Duzib151G0764 Durio zibethinus HOM05D005513 ORTHO05D006848 3.2e-136 488.8 319 77.1
Solyc12g038820.1 Solanum lycopersicum HOM05D005513 ORTHO05D006848 4.1e-136 488.4 251 97.6
TWI38G0850 Tripterygium wilfordii HOM05D005513 ORTHO05D006848 5.4e-136 488.0 320 76.9
Atru.chr4.1482 Acer truncatum HOM05D005513 ORTHO05D006848 9.2e-136 487.3 311 77.2
Sed0010820 Sechium edule HOM05D005513 ORTHO05D006848 1.6e-135 486.5 307 77.9
MSTRG.8188 Avicennia marina HOM05D005513 ORTHO05D006848 2.7e-135 485.7 320 75.6
Cfa015273 Carpinus fangiana HOM05D005513 ORTHO05D006848 2.7e-135 485.7 320 76.2
Potri.019G099100 Populus trichocarpa HOM05D005513 ORTHO05D006848 4.6e-135 485.0 301 78.7
vmacro15699 Vaccinium macrocarpon HOM05D005513 ORTHO05D006848 1.0e-134 483.8 329 74.2
PSO675G7310 Papaver somniferum HOM05D005513 ORTHO05D006848 3.0e-134 482.3 318 74.8
TAR362G0948 Trochodendron aralioides HOM05D005513 ORTHO05D006848 3.9e-134 481.9 318 74.8
Ciclev10021262m.g Citrus clementina HOM05D005513 ORTHO05D006848 5.0e-134 481.5 318 75.8
Oeu057533.3 Olea europaea HOM05D005513 ORTHO05D006848 1.5e-133 479.9 355 69.9
CANSAT56G3287 Cannabis sativa HOM05D005513 ORTHO05D006848 1.9e-133 479.6 318 74.8
Sabra19G0110200 Salix brachista HOM05D005513 ORTHO05D006848 1.9e-133 479.6 301 77.7
FAN26G1480 Fragaria x ananassa HOM05D005513 ORTHO05D006848 2.1e-132 476.1 318 75.8
PGR042G2305 Punica granatum HOM05D005513 ORTHO05D006848 3.6e-132 475.3 318 74.5
RcHm_v2.0_Chr2g0085091 Rosa chinensis HOM05D005513 ORTHO05D006848 8.0e-132 474.2 318 76.1
PSO541G5416 Papaver somniferum HOM05D005513 ORTHO05D006848 1.1e-131 473.8 318 73.9
Prupe.7G267200 Prunus persica HOM05D005513 ORTHO05D006848 1.1e-131 473.8 318 75.2
CiPaw.01G170000 Carya illinoinensis HOM05D005513 ORTHO05D006848 1.4e-131 473.4 301 76.7
QL10p057731 Quercus lobata HOM05D005513 ORTHO05D006848 1.4e-131 473.4 314 74.8
FAN23G0174 Fragaria x ananassa HOM05D005513 ORTHO05D006848 3.1e-131 472.2 318 75.2
EL10Ac3g06111 Beta vulgaris HOM05D005513 ORTHO05D006848 4.0e-131 471.9 318 74.2
TPR.G23516 Trifolium pratense HOM05D005513 ORTHO05D006848 4.0e-131 471.9 308 75.6
Eucgr.L00024 Eucalyptus grandis HOM05D005513 ORTHO05D006848 8.9e-131 470.7 318 73.6
RhsimUnG0015400 Rhododendron simsii HOM05D005513 ORTHO05D006848 1.2e-130 470.3 352 69.0
Atru.chr4.1511 Acer truncatum HOM05D005587 ORTHO05D007287 1.5e-130 469.9 302 77.2
Sed0015185 Sechium edule HOM05D005513 ORTHO05D006848 2.6e-130 469.2 307 75.6
CSS0028849 Camellia sinensis var. sinensis HOM05D005513 ORTHO05D006848 7.5e-130 467.6 284 79.6
FvH4_1g00490 Fragaria vesca HOM05D005513 ORTHO05D006848 9.8e-130 467.2 318 73.9
HanXRQChr10g0285921 Helianthus annuus HOM05D005513 ORTHO05D006848 1.3e-129 466.8 320 73.8
CAN.G2075.11 Capsicum annuum HOM05D005513 ORTHO05D006848 1.7e-129 466.5 317 76.3
Ca_18624_v3 Cicer arietinum L. HOM05D005513 ORTHO05D006848 1.1e-128 463.8 318 72.3
Medtr4g087590 Medicago truncatula HOM05D005513 ORTHO05D006848 1.4e-128 463.4 309 74.4
AUR62002417 Chenopodium quinoa HOM05D005513 ORTHO05D006848 4.1e-128 461.8 300 75.3
CsaV3_6G032350 Cucumis sativus L. HOM05D005513 ORTHO05D006848 4.1e-128 461.8 307 75.2
Lj4g0013603 Lotus japonicus HOM05D005513 ORTHO05D006848 5.4e-128 461.5 303 74.9
Aqoxy2G04162 Aquilegia oxysepala HOM05D005513 ORTHO05D006848 7.0e-128 461.1 308 73.4
Atru.BG.100.p Acer truncatum HOM05D005513 ORTHO05D006848 9.2e-128 460.7 284 78.5
Lalb_Chr16g0384361 Lupinus albus HOM05D005513 ORTHO05D006848 1.2e-127 460.3 318 71.4
Phvul.003G059600 Phaseolus vulgaris HOM05D005513 ORTHO05D006848 2.0e-127 459.5 302 74.5
VMungo0251G3259 Vigna mungo HOM05D005513 ORTHO05D006848 2.7e-127 459.1 318 72.0
Rhsim02G0085900 Rhododendron simsii HOM05D005513 ORTHO05D006848 3.5e-127 458.8 370 65.7
FAN28G1408 Fragaria x ananassa HOM05D005513 ORTHO05D006848 4.6e-127 458.4 338 69.8
AUR62023772 Chenopodium quinoa HOM05D005513 ORTHO05D006848 3.0e-126 455.7 300 74.7
Glyma.02G138700 Glycine max HOM05D005513 ORTHO05D006848 3.9e-126 455.3 302 73.5
Lsat_1_v5_gn_2_40261 Lactuca sativa HOM05D005513 ORTHO05D006848 3.9e-126 455.3 340 69.1
Glyma.07G206300 Glycine max HOM05D005513 ORTHO05D006848 8.6e-126 454.1 317 70.7
Psat7g119320 Pisum sativum HOM05D005513 ORTHO05D006848 8.6e-126 454.1 303 74.3
QL10p057421 Quercus lobata HOM05D005513 ORTHO05D006848 3.3e-125 452.2 284 77.8
arahy.Tifrunner.gnm1.ann1.GWB5D5 Arachis hypogaea HOM05D005513 ORTHO05D006848 9.5e-125 450.7 306 72.2
arahy.Tifrunner.gnm1.ann1.GC3WT6 Arachis hypogaea HOM05D005513 ORTHO05D006848 1.6e-124 449.9 306 71.9
Hund12358 Selenicereus undatus HOM05D005513 ORTHO05D006848 3.6e-124 448.7 301 72.8
Lj6A199G41 Lonicera japonica HOM05D005513 ORTHO05D006848 4.7e-124 448.4 286 77.6
Os08g0542600 Oryza sativa ssp. japonica HOM05D005513 ORTHO05D006848 4.7e-124 448.4 309 70.2
ATR0743G005 Amborella trichopoda HOM05D005513 ORTHO05D006848 4.0e-123 445.3 301 72.1
Eucgr.G01603 Eucalyptus grandis HOM05D005513 ORTHO05D006848 1.5e-122 443.4 318 70.8
HPP92_011686 Vanilla planifolia HOM05D005513 ORTHO05D006848 9.9e-122 440.7 301 72.4
THA.LOC104801693 Tarenaya hassleriana HOM05D005513 ORTHO05D006848 1.7e-121 439.9 301 70.1
Ca_18630_v3 Cicer arietinum L. HOM05D005513 ORTHO05D006848 2.9e-121 439.1 307 71.3
HPP92_011691 Vanilla planifolia HOM05D005513 ORTHO05D006848 3.7e-121 438.7 301 72.1
MD15G1148400 Malus domestica HOM05D005513 ORTHO05D006848 8.3e-121 437.6 284 75.7
Aa31LG3G16700 Aethionema arabicum HOM05D005513 ORTHO05D006848 3.2e-120 435.6 300 69.7
Nitab4.5_0002604g0050 Nicotiana tabacum HOM05D005513 ORTHO05D006848 3.2e-120 435.6 311 72.3
CAN.G575.78 Capsicum annuum HOM05D005513 ORTHO05D006848 2.1e-119 433.0 251 85.3
CARHR202830 Cardamine hirsuta HOM05D005513 ORTHO05D006848 2.1e-119 433.0 300 69.7
Zm00001eb037350 Zea mays HOM05D005513 ORTHO05D006848 6.0e-119 431.4 298 69.8
Carub.0006s0894 Capsella rubella HOM05D005513 ORTHO05D006848 1.3e-118 430.3 300 67.7
A02p00500 Brassica napus HOM05D005513 ORTHO05D006848 1.7e-118 429.9 300 68.7
BcaB05g21485 Brassica carinata HOM05D005513 ORTHO05D006848 2.3e-118 429.5 300 68.7
C02p04480 Brassica napus HOM05D005513 ORTHO05D006848 2.3e-118 429.5 300 68.7
BraA02t05034Z Brassica rapa HOM05D005513 ORTHO05D006848 2.3e-118 429.5 300 68.0
ECA238G0802 Erigeron canadensis HOM05D005513 ORTHO05D006848 8.6e-118 427.6 293 71.7
AL6G20970 Arabidopsis lyrata HOM05D005513 ORTHO05D006848 1.9e-117 426.4 300 69.0
BolC2t06408H Brassica oleracea HOM05D005513 ORTHO05D006848 3.3e-117 425.6 300 68.0
Thhalv10014198m.g Eutrema salsugineum HOM05D005513 ORTHO05D006848 3.6e-116 422.2 300 68.7
Dinv33223 Davidia involucrata HOM05D005513 ORTHO05D006848 6.2e-116 421.4 251 81.7
SGA_v2.0_scaffold122G33215 Striga asiatica HOM05D005513 ORTHO05D006848 6.2e-116 421.4 346 64.7
MELO3C011447.2 Cucumis melo HOM05D005513 ORTHO05D006848 1.1e-115 420.6 346 64.2
Sp6g32980 Schrenkiella parvula HOM05D005513 ORTHO05D006848 1.4e-115 420.2 300 68.0
AT5G10460 Arabidopsis thaliana HOM05D005513 ORTHO05D006848 2.6e-114 416.0 300 67.3
BcaC03g13313 Brassica carinata HOM05D005513 ORTHO05D006848 1.3e-113 413.7 300 67.0
Nitab4.5_0000241g0250 Nicotiana tabacum HOM05D005513 ORTHO05D006848 4.1e-112 408.7 313 68.4
SEGI_26385 Sequoiadendron giganteum HOM05D005513 ORTHO05D006848 5.4e-112 408.3 302 63.2
ClCG08G010170 Citrullus lanatus HOM05D005513 ORTHO05D006848 8.7e-110 401.0 308 67.2
Sc19g0006410 Simmondsia chinensis HOM05D005513 ORTHO05D006848 3.8e-105 385.6 251 75.3
SMO119G0305 Selaginella moellendorffii HOM05D005513 ORTHO05D006848 2.7e-95 352.8 303 56.8
CAN.G2075.13 Capsicum annuum HOM05D005513 ORTHO05D006848 1.9e-93 346.7 227 78.9
DCAR_005450 Daucus carota HOM05D005513 ORTHO05D006848 4.3e-93 345.5 209 79.9
Lj6A58T47 Lonicera japonica HOM05D005513 ORTHO05D006848 4.2e-88 328.9 223 75.3
CAN.G181.20 Capsicum annuum HOM05D005513 ORTHO05D006848 7.9e-87 324.7 192 84.9
Haze_01354 Corylus avellana HOM05D005513 ORTHO05D006848 1.1e-85 320.9 207 75.8
CAN.G1565.3 Capsicum annuum HOM05D005513 ORTHO05D006848 1.2e-74 284.3 318 51.9
MCO04G248 Micromonas commoda HOM05D005513 ORTHO05D006848 1.1e-72 277.7 335 45.1
Medtr4g087600 Medicago truncatula HOM05D005513 ORTHO05D006848 5.1e-70 268.9 209 65.6
AUR62021707 Chenopodium quinoa HOM05D005513 ORTHO05D006848 3.3e-69 266.2 187 71.1
PRCOL_00005454 Prasinoderma coloniale HOM05D005513 ORTHO05D006848 2.8e-60 236.5 306 45.8
CAN.G1703.16 Capsicum annuum HOM05D005513 ORTHO05D006848 8.2e-60 235.0 142 83.8
Gorai.004G148900 Gossypium raimondii HOM05D005513 ORTHO05D006848 9.1e-59 231.5 167 71.9
Lj6A193T36 Lonicera japonica HOM05D005513 ORTHO05D006848 4.5e-58 229.2 178 69.7
Cre14.g609300 Chlamydomonas reinhardtii HOM05D005513 ORTHO05D006848 6.3e-52 208.8 391 35.5
SHI25989 Sapria himalayana HOM05D000105 ORTHO05D000023 4.8e-44 182.6 152 60.5
Lj6A58T48 Lonicera japonica HOM05D005513 ORTHO05D006848 3.5e-42 176.4 112 78.6
Cc00_g04390 Coffea canephora HOM05D005513 ORTHO05D006848 2.9e-41 173.3 118 72.0
Lj6A203T27 Lonicera japonica HOM05D005513 ORTHO05D006848 6.8e-38 162.2 100 76.0
CAN.G1703.15 Capsicum annuum HOM05D005513 ORTHO05D006848 7.5e-37 158.7 92 85.9
CAN.G12630.1 Capsicum annuum HOM05D005513 ORTHO05D006848 4.2e-32 142.9 80 86.2
Lj6A203G20 Lonicera japonica HOM05D005513 ORTHO05D006848 7.5e-29 132.1 176 45.5
EL10Ac7g16782 Beta vulgaris HOM05D005513 ORTHO05D006848 1.4e-22 111.3 67 79.1
Lj6C203G2 Lonicera japonica HOM05D005513 ORTHO05D006848 5.2e-22 109.4 77 71.4
RcHm_v2.0_Chr2g0085051 Rosa chinensis HOM05D005513 ORTHO05D343180 1.7e-17 94.4 86 57.0
Lj6A192T18 Lonicera japonica HOM05D005513 ORTHO05D006848 4.0e-14 83.2 57 68.4
Lj6A230T44 Lonicera japonica HOM05D005513 ORTHO05D006848 6.8e-14 82.4 53 77.4
SHI25988 Sapria himalayana HOM05D000105 ORTHO05D000023 6.4e-12 75.9 81 49.4
SHI25987 Sapria himalayana HOM05D005513 ORTHO05D006848 2.8e-07 60.5 39 66.7


User provided reference genes

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