Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen12g018880 Solanum pennellii HOM05D004908 ORTHO05D006418 4.4e-178 627.9 320 100.0
Peaxi162Scf01223g00009 Petunia axillaris HOM05D004908 ORTHO05D006418 1.1e-115 420.6 336 68.2
Nitab4.5_0001797g0080 Nicotiana tabacum HOM05D004908 ORTHO05D006418 4.8e-108 395.2 350 63.4
Solyc12g038590.2 Solanum lycopersicum HOM05D004908 ORTHO05D006418 1.4e-99 367.1 196 94.4
Dinv17436 Davidia involucrata HOM05D004908 ORTHO05D006418 6.1e-95 351.7 346 56.6
Hma1.2p1_0060F.1_g032940 Hydrangea macrophylla HOM05D004908 ORTHO05D006418 8.5e-89 331.3 348 54.6
Cc00_g03370 Coffea canephora HOM05D004908 ORTHO05D006418 1.9e-88 330.1 340 56.8
Cfa019355 Carpinus fangiana HOM05D004908 ORTHO05D006418 2.1e-87 326.6 341 56.0
Oeu032097.2 Olea europaea HOM05D004908 ORTHO05D006418 1.4e-86 323.9 372 51.9
CSS0022679 Camellia sinensis var. sinensis HOM05D004908 ORTHO05D006418 8.8e-86 321.2 342 53.8
MSTRG.9592 Avicennia marina HOM05D004908 ORTHO05D006418 1.1e-85 320.9 338 55.0
CiPaw.12G009100 Carya illinoinensis HOM05D004908 ORTHO05D006418 7.4e-85 318.2 343 54.2
SGA_v2.0_scaffold51G18774 Striga asiatica HOM05D004908 ORTHO05D006418 1.3e-84 317.4 357 52.1
TAR371G0785 Trochodendron aralioides HOM05D004908 ORTHO05D006418 1.4e-83 313.9 341 54.3
QL10p019966 Quercus lobata HOM05D004908 ORTHO05D006418 5.3e-83 312.0 348 52.3
Migut.D01626 Erythranthe guttata HOM05D004908 ORTHO05D006418 1.2e-82 310.8 327 55.0
GSVIVG01008119001 Vitis vinifera HOM05D004908 ORTHO05D006418 3.4e-82 309.3 335 54.0
Haze_07746 Corylus avellana HOM05D004908 ORTHO05D006418 4.5e-82 308.9 370 51.1
Potri.006G227300 Populus trichocarpa HOM05D004908 ORTHO05D006418 7.7e-82 308.1 337 53.4
HanXRQChr05g0153521 Helianthus annuus HOM05D004908 ORTHO05D006418 3.8e-81 305.8 315 55.2
Prupe.5G207300 Prunus persica HOM05D004908 ORTHO05D006418 1.9e-80 303.5 348 51.7
Gorai.008G298500 Gossypium raimondii HOM05D004908 ORTHO05D006418 3.2e-80 302.8 338 52.1
Gohir.A12G276800 Gossypium hirsutum HOM05D004908 ORTHO05D006418 4.2e-80 302.4 338 52.1
Nitab4.5_0006506g0020 Nicotiana tabacum HOM05D004908 ORTHO05D006418 5.5e-80 302.0 231 70.1
Lsat_1_v5_gn_5_22901 Lactuca sativa HOM05D004908 ORTHO05D006418 9.4e-80 301.2 338 52.1
MD14G1214000 Malus domestica HOM05D004908 ORTHO05D006418 9.4e-80 301.2 353 52.4
Sabra06G0175900 Salix brachista HOM05D004908 ORTHO05D006418 4.7e-79 298.9 337 52.5
Manes.14G087300 Manihot esculenta HOM05D004908 ORTHO05D006418 6.1e-79 298.5 350 51.4
RcHm_v2.0_Chr7g0183321 Rosa chinensis HOM05D004908 ORTHO05D006418 1.0e-78 297.7 342 49.7
Eucgr.B00624 Eucalyptus grandis HOM05D004908 ORTHO05D006418 1.4e-78 297.4 337 53.7
Thecc.03G001900 Theobroma cacao HOM05D004908 ORTHO05D006418 2.3e-78 296.6 298 55.7
Nn4g23471 Nelumbo nucifera HOM05D004908 ORTHO05D006418 5.2e-78 295.4 341 51.6
Cpa.g.sc94.75 Carica papaya HOM05D004908 ORTHO05D006418 1.5e-77 293.9 320 53.1
Lj9C439G11 Lonicera japonica HOM05D004908 ORTHO05D006418 1.5e-77 293.9 217 70.5
Gohir.D12G277800 Gossypium hirsutum HOM05D004908 ORTHO05D006418 2.6e-77 293.1 322 54.3
CARHR019220 Cardamine hirsuta HOM05D004908 ORTHO05D006418 5.7e-77 292.0 291 55.7
Thhalv10008142m.g Eutrema salsugineum HOM05D004908 ORTHO05D006418 5.7e-77 292.0 278 56.5
ECA246G3883 Erigeron canadensis HOM05D004908 ORTHO05D006418 9.7e-77 291.2 246 62.6
Rhsim08G0143800 Rhododendron simsii HOM05D004908 ORTHO05D006418 2.2e-76 290.0 385 47.0
BolC5t30387H Brassica oleracea HOM05D004908 ORTHO05D006418 2.8e-76 289.7 322 52.2
A06p14680 Brassica napus HOM05D004908 ORTHO05D006418 3.7e-76 289.3 330 50.9
BraA06t24593Z Brassica rapa HOM05D004908 ORTHO05D006418 3.7e-76 289.3 330 50.9
BcaB07g31879 Brassica carinata HOM05D004908 ORTHO05D006418 3.1e-75 286.2 238 61.8
BcaC05g25755 Brassica carinata HOM05D004908 ORTHO05D006418 3.1e-75 286.2 238 62.6
C05p16860 Brassica napus HOM05D004908 ORTHO05D006418 3.1e-75 286.2 238 62.6
FvH4_5g13640 Fragaria vesca HOM05D004908 ORTHO05D006418 4.1e-75 285.8 346 49.7
Atru.chr9.517 Acer truncatum HOM05D004908 ORTHO05D006418 9.1e-75 284.6 340 50.6
CANSAT80G1354 Cannabis sativa HOM05D004908 ORTHO05D006418 9.1e-75 284.6 343 49.9
Prupe.5G207200 Prunus persica HOM05D004908 ORTHO05D006418 9.1e-75 284.6 349 48.7
AL1G31040 Arabidopsis lyrata HOM05D004908 ORTHO05D006418 1.2e-74 284.3 281 53.7
Glyma.05G019500 Glycine max HOM05D004908 ORTHO05D006418 3.5e-74 282.7 305 54.1
Carub.0001s1823 Capsella rubella HOM05D004908 ORTHO05D006418 4.5e-74 282.3 278 53.6
Hund02570 Selenicereus undatus HOM05D004908 ORTHO05D006418 4.5e-74 282.3 335 48.1
TWI81G0201 Tripterygium wilfordii HOM05D004908 ORTHO05D006418 7.7e-74 281.6 273 57.9
AT1G18600 Arabidopsis thaliana HOM05D004908 ORTHO05D006418 6.5e-73 278.5 332 49.1
Phvul.003G183300 Phaseolus vulgaris HOM05D004908 ORTHO05D006418 8.5e-73 278.1 300 52.3
Duzib068G0428 Durio zibethinus HOM05D004908 ORTHO05D006418 2.5e-72 276.6 353 48.7
AUR62021531 Chenopodium quinoa HOM05D004908 ORTHO05D006418 3.2e-72 276.2 345 47.0
VMungo1215G2693 Vigna mungo HOM05D004908 ORTHO05D006418 3.2e-72 276.2 230 63.0
THA.LOC104808039 Tarenaya hassleriana HOM05D004908 ORTHO05D006418 5.5e-72 275.4 315 50.5
AUR62039652 Chenopodium quinoa HOM05D004908 ORTHO05D006418 7.2e-72 275.0 335 48.7
Sp1g16570 Schrenkiella parvula HOM05D004908 ORTHO05D006418 1.6e-71 273.9 278 52.5
Ciclev10021158m.g Citrus clementina HOM05D004908 ORTHO05D006418 2.1e-71 273.5 340 49.1
CsaV3_1G006120 Cucumis sativus L. HOM05D004908 ORTHO05D006418 2.1e-71 273.5 343 47.8
unitig_699.g19027 Utricularia gibba HOM05D004908 ORTHO05D006418 6.1e-71 271.9 213 67.1
Ah.11g047620 Amaranthus hybridus HOM05D004908 ORTHO05D006418 1.0e-70 271.2 286 52.4
Lj4g0028183 Lotus japonicus HOM05D004908 ORTHO05D006418 1.8e-70 270.4 229 61.6
Aqoxy3G03654 Aquilegia oxysepala HOM05D004908 ORTHO05D006418 2.0e-69 266.9 333 49.5
Medtr4g109700 Medicago truncatula HOM05D004908 ORTHO05D006418 9.7e-69 264.6 307 48.5
Sed0013495 Sechium edule HOM05D004908 ORTHO05D006418 9.7e-69 264.6 296 52.0
ClCG04G011680 Citrullus lanatus HOM05D004908 ORTHO05D006418 2.8e-68 263.1 295 53.2
TPR.G1983 Trifolium pratense HOM05D004908 ORTHO05D006418 8.2e-68 261.5 261 54.0
Aa31LG7G3360 Aethionema arabicum HOM05D004908 ORTHO05D006418 1.8e-67 260.4 239 57.7
MBI16_g10851_MAGBIO Magnolia biondii HOM05D004908 ORTHO05D006418 7.0e-67 258.5 324 47.5
EL10Ac5g11159 Beta vulgaris HOM05D004908 ORTHO05D006418 5.9e-66 255.4 211 62.6
Solyc12g038600.2 Solanum lycopersicum HOM05D004908 ORTHO05D006418 5.9e-66 255.4 137 97.1
arahy.Tifrunner.gnm1.ann1.J6BFMQ Arachis hypogaea HOM05D004908 ORTHO05D006418 5.0e-65 252.3 282 51.8
arahy.Tifrunner.gnm1.ann1.PAN20U Arachis hypogaea HOM05D004908 ORTHO05D006418 5.0e-65 252.3 282 51.8
SalBow7G1843 Salvia bowleyana HOM05D004908 ORTHO05D006418 3.2e-64 249.6 281 48.4
Lalb_Chr07g0178341 Lupinus albus HOM05D004908 ORTHO05D006418 7.2e-64 248.4 266 53.0
Manes.14G087101 Manihot esculenta HOM05D004908 ORTHO05D006418 1.2e-63 247.7 301 48.2
Duzib205G0531 Durio zibethinus HOM05D004908 ORTHO05D006418 1.2e-61 241.1 274 49.3
PSO478G4625 Papaver somniferum HOM05D004908 ORTHO05D006418 1.5e-61 240.7 203 61.1
DCAR_011562 Daucus carota HOM05D004908 ORTHO05D006418 1.1e-59 234.6 298 49.7
MELO3C002041.2 Cucumis melo HOM05D004908 ORTHO05D006418 1.4e-59 234.2 315 47.3
PSO017G5063 Papaver somniferum HOM05D004908 ORTHO05D006418 3.1e-59 233.0 305 48.5
PSO017G6704 Papaver somniferum HOM05D004908 ORTHO05D006418 3.1e-59 233.0 303 47.9
CDE07G0469 Ceratophyllum demersum HOM05D004908 ORTHO05D006418 8.6e-57 224.9 278 45.3
FAN08G0411 Fragaria x ananassa HOM05D004908 ORTHO05D006418 2.5e-56 223.4 333 44.4
Os01g0763100 Oryza sativa ssp. japonica HOM05D004908 ORTHO05D006418 9.5e-56 221.5 203 56.2
PGR083G2541 Punica granatum HOM05D004908 ORTHO05D006418 8.0e-55 218.4 284 47.5
FAN13G3071 Fragaria x ananassa HOM05D004908 ORTHO05D006418 1.0e-54 218.0 346 42.5
FAN13G1921 Fragaria x ananassa HOM05D004908 ORTHO05D006418 1.8e-54 217.2 340 42.1
FAN08G1663 Fragaria x ananassa HOM05D004908 ORTHO05D006418 1.5e-53 214.2 342 41.5
FAN18G1888 Fragaria x ananassa HOM05D004908 ORTHO05D006418 2.6e-53 213.4 343 42.9
Sc04g0004310 Simmondsia chinensis HOM05D004908 ORTHO05D006418 2.8e-52 209.9 332 41.0
SHI17490 Sapria himalayana HOM05D004908 ORTHO05D006418 6.3e-52 208.8 246 49.6
ATR0827G189 Amborella trichopoda HOM05D004908 ORTHO05D006418 8.3e-52 208.4 198 55.1
HPP92_019201 Vanilla planifolia HOM05D004908 ORTHO05D006418 1.4e-51 207.6 217 50.7
SalBow7G4422 Salvia bowleyana HOM05D004908 ORTHO05D006418 7.8e-50 201.8 285 42.8
vmacro17622 Vaccinium macrocarpon HOM05D004908 ORTHO05D006418 7.8e-50 201.8 217 52.1
SalBow7G0217 Salvia bowleyana HOM05D004908 ORTHO05D006418 1.1e-48 198.0 300 42.7
FAN13G1644 Fragaria x ananassa HOM05D004908 ORTHO05D006418 4.3e-48 196.1 203 54.7
Carub.0002s2094 Capsella rubella HOM05D004908 ORTHO05D006418 1.2e-45 188.0 276 40.2
Pp3c22_7870 Physcomitrium patens HOM05D004908 ORTHO05D006418 9.8e-45 184.9 215 45.6
AT1G74130 Arabidopsis thaliana HOM05D004908 ORTHO05D006418 8.3e-44 181.8 273 39.9
Zm00001eb370410 Zea mays HOM05D004908 ORTHO05D006418 8.3e-44 181.8 203 52.7
CARHR067290 Cardamine hirsuta HOM05D004908 ORTHO05D006418 3.2e-43 179.9 291 40.2
PSO017G2617 Papaver somniferum HOM05D004908 ORTHO05D006418 4.1e-43 179.5 203 50.7
AL2G34040 Arabidopsis lyrata HOM05D004908 ORTHO05D006418 7.8e-42 175.3 274 41.2
FvH4_5g13620 Fragaria vesca HOM05D004908 ORTHO05D006418 5.0e-41 172.6 162 56.2
AagrBONN_evm.TU.Sc2ySwM_368.1628 Anthoceros agrestis HOM05D004908 ORTHO05D006418 4.3e-40 169.5 217 44.2
Gohir.D10G255500 Gossypium hirsutum HOM05D004908 ORTHO05D006418 4.3e-40 169.5 134 64.2
SalBow7G4769 Salvia bowleyana HOM05D004908 ORTHO05D006418 2.8e-39 166.8 316 38.0
Psat0s3566g0040 Pisum sativum HOM05D004908 ORTHO05D006418 3.6e-39 166.4 191 48.7
Carub.0002s2095 Capsella rubella HOM05D004908 ORTHO05D006418 1.1e-38 164.9 246 42.3
Mapoly0086s0048 Marchantia polymorpha HOM05D004908 ORTHO05D006418 4.0e-38 162.9 194 45.4
Prupe.3G124800 Prunus persica HOM05D004908 ORTHO05D006418 2.0e-37 160.6 356 36.0
RcHm_v2.0_Chr1g0346931 Rosa chinensis HOM05D004908 ORTHO05D006418 2.6e-37 160.2 148 58.8
BraA07t31547Z Brassica rapa HOM05D003320 ORTHO05D003941 3.4e-37 159.8 303 36.6
Thhalv10019561m.g Eutrema salsugineum HOM05D004908 ORTHO05D006418 7.5e-37 158.7 272 40.4
Glyma.17G080300 Glycine max HOM05D004908 ORTHO05D006418 7.5e-37 158.7 173 52.0
A07p40020 Brassica napus HOM05D003320 ORTHO05D003941 4.9e-36 156.0 224 41.1
BcaC08g46817 Brassica carinata HOM05D004908 ORTHO05D006418 3.2e-35 153.3 324 33.6
MCO07G692 Micromonas commoda HOM05D004908 ORTHO05D006418 3.0e-33 146.7 206 39.3
C06p48290 Brassica napus HOM05D003320 ORTHO05D003941 2.5e-32 143.7 260 37.3
BcaC08g46846 Brassica carinata HOM05D003320 ORTHO05D003941 5.6e-32 142.5 324 33.3
BolC6t39860H Brassica oleracea HOM05D004908 ORTHO05D006418 9.5e-32 141.7 215 40.5
BcaC08g46813 Brassica carinata HOM05D004908 ORTHO05D006418 6.2e-31 139.0 210 38.6
AT1G74140 Arabidopsis thaliana HOM05D004908 ORTHO05D006418 1.1e-30 138.3 277 35.4
SEGI_05482 Sequoiadendron giganteum HOM05D004908 ORTHO05D006418 2.3e-30 137.1 162 51.9
Actinidia04812 Actinidia chinensis HOM05D004908 ORTHO05D006418 1.3e-28 131.3 213 41.3
C06p48280 Brassica napus HOM05D004908 ORTHO05D006418 1.7e-28 131.0 176 41.5
vmacro17623 Vaccinium macrocarpon HOM05D004908 ORTHO05D006418 2.4e-27 127.1 91 71.4
RcHm_v2.0_Chr6g0258631 Rosa chinensis HOM05D004908 ORTHO05D006418 1.6e-26 124.4 108 61.1
RcHm_v2.0_Chr7g0183341 Rosa chinensis HOM05D004908 ORTHO05D006418 2.7e-26 123.6 115 55.7
Actinidia13428 Actinidia chinensis HOM05D004908 ORTHO05D006418 6.0e-26 122.5 103 63.1
HPP92_019191 Vanilla planifolia HOM05D004908 ORTHO05D006418 1.2e-23 114.8 109 54.1
RcHm_v2.0_Chr6g0258651 Rosa chinensis HOM05D004908 ORTHO05D006418 4.0e-22 109.8 76 68.4
Gohir.A06G087200 Gossypium hirsutum HOM05D004908 ORTHO05D006418 5.2e-22 109.4 78 66.7
CBR_g24070 Chara braunii HOM05D000019 ORTHO05D000002 7.6e-21 105.5 135 43.0
RcHm_v2.0_Chr1g0346941 Rosa chinensis HOM05D004908 ORTHO05D006418 1.1e-16 91.7 70 62.9
BolC6t39863H Brassica oleracea HOM05D004908 ORTHO05D039080 4.3e-16 89.7 174 37.9
FvH4_5g13610 Fragaria vesca HOM05D004908 ORTHO05D006418 8.1e-15 85.5 70 61.4
BcaC08g46819 Brassica carinata HOM05D004908 ORTHO05D039080 1.3e-12 78.2 69 55.1
Dinv17434 Davidia involucrata HOM05D004908 ORTHO05D006418 3.8e-12 76.6 88 48.9
Gohir.A07G149500 Gossypium hirsutum HOM05D004908 ORTHO05D006418 2.5e-08 63.9 46 63.0


User provided reference genes

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