Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen12g016610 Solanum pennellii HOM05D006409 ORTHO05D008250 1.7e-200 702.6 400 100.0
Solyc12g036300.3 Solanum lycopersicum HOM05D006409 ORTHO05D008250 4.5e-188 661.4 400 95.2
PGSC0003DMG400012806 Solanum tuberosum HOM05D006409 ORTHO05D008250 2.0e-180 636.0 440 82.7
Nitab4.5_0001961g0070 Nicotiana tabacum HOM05D006409 ORTHO05D008250 2.3e-160 569.3 393 78.6
Nitab4.5_0005160g0050 Nicotiana tabacum HOM05D006409 ORTHO05D008250 1.2e-148 530.4 404 74.0
Peaxi162Scf00106g00081 Petunia axillaris HOM05D006409 ORTHO05D008250 4.0e-144 515.4 399 76.7
CAN.G172.10 Capsicum annuum HOM05D006409 ORTHO05D008250 1.4e-141 506.9 359 79.4
Oeu014392.1 Olea europaea HOM05D006409 ORTHO05D006262 2.9e-102 376.3 409 53.8
Dinv38786 Davidia involucrata HOM05D006409 ORTHO05D008250 1.3e-99 367.5 396 54.5
Cc00_g02320 Coffea canephora HOM05D006409 ORTHO05D008250 1.7e-99 367.1 399 54.4
TAR629G2567 Trochodendron aralioides HOM05D006409 ORTHO05D008250 3.0e-99 366.3 389 55.0
Sabra15G0078400 Salix brachista HOM05D006409 ORTHO05D008250 5.1e-91 339.0 371 55.0
Rhsim08G0148500 Rhododendron simsii HOM05D006409 ORTHO05D008250 1.9e-90 337.0 376 52.7
Ciclev10020474m.g Citrus clementina HOM05D006409 ORTHO05D008250 9.6e-90 334.7 385 53.2
Potri.015G048900 Populus trichocarpa HOM05D006409 ORTHO05D008250 9.6e-90 334.7 384 52.9
MD14G1208800 Malus domestica HOM05D006409 ORTHO05D008250 6.9e-88 328.6 382 52.9
MSTRG.22971 Avicennia marina HOM05D006409 ORTHO05D008250 2.0e-87 327.0 384 52.1
QL10p018676 Quercus lobata HOM05D006409 ORTHO05D008250 2.0e-87 327.0 385 49.9
Thecc.03G097200 Theobroma cacao HOM05D006409 ORTHO05D008250 1.3e-86 324.3 378 52.4
CiPaw.11G050000 Carya illinoinensis HOM05D006409 ORTHO05D008250 1.7e-86 323.9 382 50.5
PGR083G0341 Punica granatum HOM05D006409 ORTHO05D008250 1.4e-85 320.9 363 54.5
CANSAT80G1113 Cannabis sativa HOM05D006409 ORTHO05D008250 4.2e-85 319.3 384 51.6
Duzib084G0027 Durio zibethinus HOM05D006409 ORTHO05D008250 1.7e-83 313.9 404 48.0
Actinidia09250 Actinidia chinensis HOM05D006409 ORTHO05D008250 1.1e-82 311.2 341 55.4
Prupe.5G201100 Prunus persica HOM05D006409 ORTHO05D008250 1.1e-82 311.2 396 48.5
Manes.14G084000 Manihot esculenta HOM05D006409 ORTHO05D008250 2.1e-81 307.0 382 49.0
Aqoxy3G03581 Aquilegia oxysepala HOM05D006409 ORTHO05D008250 3.1e-80 303.1 386 49.7
FAN18G2755 Fragaria x ananassa HOM05D006409 ORTHO05D008250 9.9e-79 298.1 388 48.2
Eucgr.B00571 Eucalyptus grandis HOM05D006409 ORTHO05D008250 7.1e-77 292.0 382 48.7
Lj4g0024886 Lotus japonicus HOM05D006409 ORTHO05D008250 1.2e-76 291.2 379 48.5
vmacro17591 Vaccinium macrocarpon HOM05D006409 ORTHO05D008250 1.2e-76 291.2 415 46.0
Cfa019299 Carpinus fangiana HOM05D006409 ORTHO05D008250 4.6e-76 289.3 404 45.0
DCAR_026015 Daucus carota HOM05D006409 ORTHO05D008250 1.0e-75 288.1 375 48.8
FAN13G1588 Fragaria x ananassa HOM05D006409 ORTHO05D008250 3.9e-75 286.2 377 47.5
GSVIVG01007923001 Vitis vinifera HOM05D006409 ORTHO05D008250 3.3e-74 283.1 391 45.3
Cpa.g.sc94.9 Carica papaya HOM05D006409 ORTHO05D008250 5.3e-72 275.8 385 45.5
Glyma.17G076800 Glycine max HOM05D006409 ORTHO05D008250 5.3e-72 275.8 384 47.7
Glyma.05G022800 Glycine max HOM05D006409 ORTHO05D008250 1.2e-71 274.6 362 48.6
Gohir.D12G183500 Gossypium hirsutum HOM05D006409 ORTHO05D008250 2.0e-71 273.9 410 44.4
Carub.0008s2186 Capsella rubella HOM05D006409 ORTHO05D008250 3.4e-71 273.1 387 45.5
TWI81G1094 Tripterygium wilfordii HOM05D006409 ORTHO05D008250 1.0e-70 271.6 404 45.8
Gorai.008G196800 Gossypium raimondii HOM05D006409 ORTHO05D008250 8.4e-70 268.5 383 45.7
PSO302G0195 Papaver somniferum HOM05D006409 ORTHO05D008250 1.4e-69 267.7 373 45.8
arahy.Tifrunner.gnm1.ann1.PS4SMH Arachis hypogaea HOM05D006409 ORTHO05D008250 2.5e-69 266.9 373 46.9
Sp6g35060 Schrenkiella parvula HOM05D006409 ORTHO05D008250 4.2e-69 266.2 391 45.3
MELO3C002015.2 Cucumis melo HOM05D006409 ORTHO05D008250 7.1e-69 265.4 380 45.8
Medtr4g109330 Medicago truncatula HOM05D006409 ORTHO05D008250 6.0e-68 262.3 320 51.6
RcHm_v2.0_Chr7g0182601 Rosa chinensis HOM05D006409 ORTHO05D008250 1.3e-67 261.2 394 44.9
arahy.Tifrunner.gnm1.ann1.4D2E4C Arachis hypogaea HOM05D006409 ORTHO05D008250 6.7e-67 258.8 373 46.6
CARHR205310 Cardamine hirsuta HOM05D006409 ORTHO05D008250 6.7e-67 258.8 388 45.1
AL6G18220 Arabidopsis lyrata HOM05D006409 ORTHO05D008250 1.1e-66 258.1 392 44.1
CsaV3_1G005860 Cucumis sativus L. HOM05D006409 ORTHO05D008250 1.1e-66 258.1 381 45.4
Actinidia04843 Actinidia chinensis HOM05D006409 ORTHO05D008250 1.5e-66 257.7 255 56.9
SalBow5G3762 Salvia bowleyana HOM05D006409 ORTHO05D008250 1.5e-66 257.7 372 46.2
AT5G07890 Arabidopsis thaliana HOM05D006409 ORTHO05D008250 3.3e-66 256.5 390 43.6
ClCG04G011930 Citrullus lanatus HOM05D006409 ORTHO05D008250 3.3e-66 256.5 376 45.2
CANSAT80G0413 Cannabis sativa HOM05D006409 ORTHO05D008250 5.7e-66 255.8 370 45.1
BcaC06g32511 Brassica carinata HOM05D001913 ORTHO05D008250 7.4e-66 255.4 392 43.6
PSO017G5610 Papaver somniferum HOM05D006409 ORTHO05D008250 9.6e-66 255.0 374 44.7
BolC9t59643H Brassica oleracea HOM05D006409 ORTHO05D008250 1.3e-65 254.6 386 45.3
Nn4g23374 Nelumbo nucifera HOM05D006409 ORTHO05D008250 3.7e-65 253.1 389 43.2
COL.COLO4_22753 Corchorus olitorius HOM05D006409 ORTHO05D008250 4.8e-65 252.7 400 42.5
Lj5A105T60 Lonicera japonica HOM05D006409 ORTHO05D008250 6.3e-65 252.3 323 48.0
Psat4g048440 Pisum sativum HOM05D006409 ORTHO05D008250 6.3e-65 252.3 318 47.8
FAN08G0388 Fragaria x ananassa HOM05D006409 ORTHO05D008250 3.1e-64 250.0 388 44.1
PSO478G4763 Papaver somniferum HOM05D006409 ORTHO05D008250 4.1e-64 249.6 374 43.9
AL8G37860 Arabidopsis lyrata HOM05D006409 ORTHO05D008250 5.3e-64 249.2 383 44.9
Gohir.A12G180800 Gossypium hirsutum HOM05D006409 ORTHO05D008250 9.0e-64 248.4 410 42.4
C03p03950 Brassica napus HOM05D006409 ORTHO05D008250 1.5e-63 247.7 388 44.6
BolC3t12932H Brassica oleracea HOM05D006409 ORTHO05D008250 1.5e-63 247.7 388 44.6
THA.LOC104818336 Tarenaya hassleriana HOM05D006409 ORTHO05D008250 1.5e-63 247.7 387 43.4
C09p68980 Brassica napus HOM05D006409 ORTHO05D006405 2.0e-63 247.3 379 44.1
Migut.I00315 Erythranthe guttata HOM05D006409 ORTHO05D008250 4.5e-63 246.1 376 44.4
ATR0064G033 Amborella trichopoda HOM05D006409 ORTHO05D008250 7.6e-63 245.4 398 42.2
FvH4_5g14277 Fragaria vesca HOM05D006409 ORTHO05D008250 1.7e-62 244.2 339 46.9
Haze_07680 Corylus avellana HOM05D006409 ORTHO05D008250 5.0e-62 242.7 329 46.2
A10p28660 Brassica napus HOM05D006409 ORTHO05D008250 8.5e-62 241.9 385 43.1
Lalb_Chr13g0302951 Lupinus albus HOM05D006409 ORTHO05D008250 1.1e-61 241.5 384 44.0
BcaB01g05645 Brassica carinata HOM05D006409 ORTHO05D008250 3.2e-61 240.0 380 44.7
VMungo1215G3198 Vigna mungo HOM05D006409 ORTHO05D008250 5.5e-61 239.2 355 43.9
BcaNung06903 Brassica carinata HOM05D006409 ORTHO05D008250 1.6e-60 237.7 384 42.7
BraA10t44915Z Brassica rapa HOM05D001913 ORTHO05D006405 4.6e-60 236.1 372 44.1
Phvul.L001604 Phaseolus vulgaris HOM05D006409 ORTHO05D008250 4.6e-60 236.1 337 46.0
AUR62021594 Chenopodium quinoa HOM05D006409 ORTHO05D008250 1.3e-59 234.6 343 43.1
AT5G61200 Arabidopsis thaliana HOM05D006409 ORTHO05D008250 1.8e-59 234.2 381 42.5
Carub.0006s0678 Capsella rubella HOM05D006409 ORTHO05D008250 2.3e-59 233.8 368 42.7
Atru.chr9.377 Acer truncatum HOM05D006409 ORTHO05D008250 5.1e-59 232.6 306 48.7
Thhalv10013673m.g Eutrema salsugineum HOM05D006409 ORTHO05D008250 6.7e-59 232.3 382 42.1
TPR.G2042 Trifolium pratense HOM05D006409 ORTHO05D008250 1.5e-58 231.1 372 42.5
HanXRQChr09g0270151 Helianthus annuus HOM05D006409 ORTHO05D008250 2.2e-57 227.3 385 40.8
A03p03510 Brassica napus HOM05D006409 ORTHO05D008250 9.0e-56 221.9 390 41.0
BraA03t09701Z Brassica rapa HOM05D006409 ORTHO05D008250 9.0e-56 221.9 390 41.0
Sed0008489 Sechium edule HOM05D006409 ORTHO05D008250 3.8e-54 216.5 400 41.0
AUR62008498 Chenopodium quinoa HOM05D006409 ORTHO05D008250 1.1e-53 214.9 390 38.2
ECA232G2526 Erigeron canadensis HOM05D006409 ORTHO05D008250 3.2e-53 213.4 382 39.5
Sc04g0003080 Simmondsia chinensis HOM05D006409 ORTHO05D008250 1.1e-48 198.4 378 38.1
CDE06G0998 Ceratophyllum demersum HOM05D006409 ORTHO05D008250 9.4e-45 185.3 337 38.9
Ca_21789_v3 Cicer arietinum L. HOM05D006409 ORTHO05D008250 9.4e-45 185.3 288 42.0
C04p51620 Brassica napus HOM05D006409 ORTHO05D008250 3.6e-44 183.3 278 45.0
Os07g0598700 Oryza sativa ssp. japonica HOM05D006409 ORTHO05D008250 3.9e-43 179.9 324 38.9
Hund02605 Selenicereus undatus HOM05D006409 ORTHO05D008250 5.2e-43 179.5 384 37.0
Ah.02g113920 Amaranthus hybridus HOM05D006409 ORTHO05D008250 1.1e-42 178.3 385 37.1
BcaC02g08700 Brassica carinata HOM05D006409 ORTHO05D008250 9.7e-42 175.3 277 43.3
Zm00001eb108440 Zea mays HOM05D006409 ORTHO05D008250 2.4e-40 170.6 324 38.0
EL10Ac5g11100 Beta vulgaris HOM05D006409 ORTHO05D008250 3.6e-36 156.8 384 33.1
HanXRQChr16g0502261 Helianthus annuus HOM05D006409 ORTHO05D008250 1.4e-32 144.8 361 33.8
BcaC02g08698 Brassica carinata HOM05D006409 ORTHO05D008250 4.5e-31 139.8 274 39.8
Duzib068G0538 Durio zibethinus HOM05D006409 ORTHO05D008250 1.5e-29 134.8 208 41.3
Lsat_1_v5_gn_4_110201 Lactuca sativa HOM05D006409 ORTHO05D008250 3.2e-29 133.7 384 32.0
SEGI_28191 Sequoiadendron giganteum HOM05D006409 ORTHO05D008250 6.3e-25 119.4 406 26.6
SEGI_37085 Sequoiadendron giganteum HOM05D006409 ORTHO05D008250 6.3e-25 119.4 406 26.6
SGA_v2.0_scaffold25G10967 Striga asiatica HOM05D006409 ORTHO05D008250 2.9e-22 110.5 342 32.2
Actinidia12838 Actinidia chinensis HOM05D006409 ORTHO05D008250 1.0e-19 102.1 82 70.7
BcaC02g08699 Brassica carinata HOM05D006409 ORTHO05D008250 1.0e-19 102.1 216 36.6
C04p51600 Brassica napus HOM05D006409 ORTHO05D008250 2.0e-15 87.8 77 67.5
arahy.Tifrunner.gnm1.ann1.LPT8KM Arachis hypogaea HOM05D006409 ORTHO05D008250 2.3e-14 84.3 73 67.1
C04p51590 Brassica napus HOM05D006409 ORTHO05D008250 1.3e-09 68.6 80 45.0
C04p51610 Brassica napus HOM05D006409 ORTHO05D008250 6.4e-09 66.2 158 36.1
AagrBONN_evm.TU.Sc2ySwM_344.1629 Anthoceros agrestis HOM05D006409 ORTHO05D008250 9.2e-08 62.4 232 25.4
Glyma.01G017150 Glycine max HOM05D006409 ORTHO05D008250 4.6e-07 60.1 74 44.6


User provided reference genes

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