Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen12g014620 Solanum pennellii HOM05D002453 ORTHO05D002107 1.8e-127 459.9 359 100.0
Solyc12g035170.3 Solanum lycopersicum HOM05D002453 ORTHO05D002107 3.8e-114 415.6 209 98.6
PGSC0003DMG402019957 Solanum tuberosum HOM05D002453 ORTHO05D002107 4.4e-102 375.6 204 90.2
Sopen06g008530 Solanum pennellii HOM05D002453 ORTHO05D002107 1.5e-81 307.4 171 87.7
Nitab4.5_0000026g0050 Nicotiana tabacum HOM05D002453 ORTHO05D002107 6.8e-79 298.5 171 84.2
CAN.G1456.8 Capsicum annuum HOM05D002453 ORTHO05D002107 5.1e-74 282.3 170 80.6
Peaxi162Scf00103g00021 Petunia axillaris HOM05D002453 ORTHO05D002107 5.6e-73 278.9 171 79.5
Nitab4.5_0005983g0010 Nicotiana tabacum HOM05D002453 ORTHO05D002107 9.9e-70 268.1 171 77.2
PGSC0003DMG400015841 Solanum tuberosum HOM05D002453 ORTHO05D002107 2.3e-66 256.9 142 88.0
Atru.chr9.2259 Acer truncatum HOM05D002453 ORTHO05D002107 1.4e-60 237.7 167 70.1
Glyma.17G099400 Glycine max HOM05D002453 ORTHO05D002107 3.5e-59 233.0 187 62.6
Lj5C111T12 Lonicera japonica HOM05D002453 ORTHO05D002107 6.6e-58 228.8 167 67.7
Ca_21825_v3 Cicer arietinum L. HOM05D002453 ORTHO05D002107 3.3e-57 226.5 167 66.5
Lalb_Chr07g0177921 Lupinus albus HOM05D002453 ORTHO05D002107 2.8e-56 223.4 171 64.3
Manes.14G077600 Manihot esculenta HOM05D002453 ORTHO05D002107 2.4e-55 220.3 167 64.7
ECA247G2160 Erigeron canadensis HOM05D002453 ORTHO05D002107 5.8e-54 215.7 166 64.5
FAN18G2707 Fragaria x ananassa HOM05D002453 ORTHO05D002107 9.9e-54 214.9 208 53.4
FvH4_5g15040 Fragaria vesca HOM05D002453 ORTHO05D002107 1.3e-53 214.5 208 53.4
FAN08G1232 Fragaria x ananassa HOM05D002453 ORTHO05D002107 1.7e-53 214.2 208 53.4
Psat4g051440 Pisum sativum HOM05D002453 ORTHO05D002107 1.7e-53 214.2 167 63.5
RcHm_v2.0_Chr7g0181161 Rosa chinensis HOM05D002453 ORTHO05D002107 1.9e-52 210.7 171 62.0
Lsat_1_v5_gn_1_13300 Lactuca sativa HOM05D002453 ORTHO05D002107 5.4e-52 209.1 169 62.1
MELO3C001976.2 Cucumis melo HOM05D002453 ORTHO05D002107 6.0e-51 205.7 173 58.4
Sc04g0002590 Simmondsia chinensis HOM05D002453 ORTHO05D002107 7.9e-51 205.3 167 58.7
Sed0001810 Sechium edule HOM05D002453 ORTHO05D002107 1.3e-50 204.5 184 57.1
Sed0019268 Sechium edule HOM05D002453 ORTHO05D002107 1.3e-50 204.5 184 57.1
Oeu016166.1 Olea europaea HOM05D002453 ORTHO05D002107 1.8e-50 204.1 171 57.3
Phvul.008G197400 Phaseolus vulgaris HOM05D002453 ORTHO05D002107 6.7e-50 202.2 167 61.1
BcaC08g46890 Brassica carinata HOM05D002453 ORTHO05D002107 1.6e-48 197.6 165 58.8
C06p48690 Brassica napus HOM05D002453 ORTHO05D002107 1.6e-48 197.6 165 58.8
Cc04_g16730 Coffea canephora HOM05D002453 ORTHO05D002107 1.6e-48 197.6 167 58.7
Ah.11g048530 Amaranthus hybridus HOM05D002453 ORTHO05D002107 8.1e-48 195.3 177 54.2
VMungo0647G1609 Vigna mungo HOM05D002453 ORTHO05D002107 8.1e-48 195.3 167 58.7
MSTRG.23026 Avicennia marina HOM05D002453 ORTHO05D002107 4.0e-47 193.0 167 58.1
Actinidia37632 Actinidia chinensis HOM05D002453 ORTHO05D002107 1.3e-45 188.0 172 54.7
ECA247G1303 Erigeron canadensis HOM05D002453 ORTHO05D002107 6.7e-42 175.6 137 64.2
AUR62021699 Chenopodium quinoa HOM05D002453 ORTHO05D002107 4.8e-40 169.5 168 50.0
Hma1.2p1_0735F.1_g210570 Hydrangea macrophylla HOM05D002453 ORTHO05D002107 1.4e-39 167.9 167 55.1
Hma1.2p1_0735F.1_g210580 Hydrangea macrophylla HOM05D002453 ORTHO05D002107 5.3e-39 166.0 167 54.5
AUR62008396 Chenopodium quinoa HOM05D002453 ORTHO05D002107 1.5e-38 164.5 168 48.8
Migut.I00174 Erythranthe guttata HOM05D002453 ORTHO05D002107 7.1e-36 155.6 114 64.9
PGR083G0367 Punica granatum HOM05D002453 ORTHO05D002107 3.5e-35 153.3 167 50.9
TPR.G9250 Trifolium pratense HOM05D002453 ORTHO05D002107 5.1e-34 149.4 183 46.4
Medtr4g108650 Medicago truncatula HOM05D002453 ORTHO05D002107 9.7e-33 145.2 167 49.7
DCAR_016546 Daucus carota HOM05D002453 ORTHO05D002107 1.4e-31 141.4 163 47.2
EL10Ac5g10989 Beta vulgaris HOM05D002453 ORTHO05D002107 3.4e-30 136.7 167 44.9
Ciclev10018977m.g Citrus clementina HOM05D002453 ORTHO05D002107 2.2e-29 134.0 165 47.3
Gorai.008G192600 Gossypium raimondii HOM05D002453 ORTHO05D002107 8.5e-29 132.1 168 45.8
CiPaw.11G043600 Carya illinoinensis HOM05D002453 ORTHO05D002107 1.4e-28 131.3 171 43.9
CSS0042446 Camellia sinensis var. sinensis HOM05D002453 ORTHO05D002107 3.2e-28 130.2 162 45.7
Cpa.g.sc17.235 Carica papaya HOM05D002453 ORTHO05D002107 7.2e-28 129.0 167 45.5
COL.COLO4_24521 Corchorus olitorius HOM05D002453 ORTHO05D002107 9.4e-28 128.6 168 45.2
CsaV3_1G005400 Cucumis sativus L. HOM05D002453 ORTHO05D002107 1.2e-27 128.3 188 42.0
CSS0000495 Camellia sinensis var. sinensis HOM05D002453 ORTHO05D002107 1.6e-27 127.9 162 45.1
BcaC08g46987 Brassica carinata HOM05D002453 ORTHO05D002107 6.1e-27 125.9 162 45.1
Rhsim08G0155900 Rhododendron simsii HOM05D002453 ORTHO05D002107 1.0e-26 125.2 167 44.3
Dinv38703 Davidia involucrata HOM05D002453 ORTHO05D002107 1.4e-26 124.8 161 46.0
Gohir.A12G177000 Gossypium hirsutum HOM05D002453 ORTHO05D002107 3.0e-26 123.6 168 44.0
Duzib205G1690 Durio zibethinus HOM05D002453 ORTHO05D002107 1.1e-25 121.7 171 42.7
Aa31LG4G4820 Aethionema arabicum HOM05D002453 ORTHO05D002107 2.0e-25 120.9 102 56.9
QL10p016708 Quercus lobata HOM05D002453 ORTHO05D002107 2.0e-25 120.9 206 40.3
HanXRQChr16g0518411 Helianthus annuus HOM05D002453 ORTHO05D002107 4.3e-25 119.8 82 73.2
TAR371G0278 Trochodendron aralioides HOM05D002453 ORTHO05D002107 5.7e-25 119.4 167 43.1
TWI81G0810 Tripterygium wilfordii HOM05D002453 ORTHO05D002107 7.4e-25 119.0 167 43.1
Eucgr.B00492 Eucalyptus grandis HOM05D002453 ORTHO05D002107 9.7e-25 118.6 174 42.0
Lj4g0004352 Lotus japonicus HOM05D002453 ORTHO05D002107 9.7e-25 118.6 167 41.9
Thecc.03G085300 Theobroma cacao HOM05D002453 ORTHO05D002107 9.7e-25 118.6 168 44.0
MD06G1192500 Malus domestica HOM05D002453 ORTHO05D002107 4.8e-24 116.3 180 40.6
Cfa018952 Carpinus fangiana HOM05D002453 ORTHO05D002107 6.3e-24 115.9 179 41.9
Haze_07333 Corylus avellana HOM05D002453 ORTHO05D002107 1.4e-23 114.8 179 41.3
Potri.010G234500 Populus trichocarpa HOM05D002453 ORTHO05D002107 2.4e-23 114.0 167 43.1
ClCG04G012320 Citrullus lanatus HOM05D002453 ORTHO05D002107 3.1e-23 113.6 164 39.0
arahy.Tifrunner.gnm1.ann1.M3LQ04 Arachis hypogaea HOM05D002453 ORTHO05D002107 4.1e-23 113.2 187 39.0
arahy.Tifrunner.gnm1.ann1.SFY2YX Arachis hypogaea HOM05D002453 ORTHO05D002107 4.1e-23 113.2 187 39.0
Prupe.5G192300 Prunus persica HOM05D002453 ORTHO05D002107 4.1e-23 113.2 173 39.9
GSVIVG01008016001 Vitis vinifera HOM05D002453 ORTHO05D002107 5.3e-23 112.8 167 41.3
Aqoxy3G03369 Aquilegia oxysepala HOM05D002453 ORTHO05D002107 1.2e-22 111.7 167 41.3
ATR0564G099 Amborella trichopoda HOM05D002453 ORTHO05D002107 1.5e-22 111.3 88 63.6
BcaC08g46889 Brassica carinata HOM05D002453 ORTHO05D002107 2.0e-22 110.9 83 57.8
THA.LOC104813874 Tarenaya hassleriana HOM05D002453 ORTHO05D002107 1.9e-20 104.4 171 38.6
CANSAT80G2218 Cannabis sativa HOM05D002453 ORTHO05D002107 2.7e-19 100.5 81 59.3
HPP92_026434 Vanilla planifolia HOM05D002453 ORTHO05D002107 4.7e-19 99.8 75 62.7
SHI14130 Sapria himalayana HOM05D002453 ORTHO05D002107 7.9e-19 99.0 169 37.9
CARHR067850 Cardamine hirsuta HOM05D002453 ORTHO05D002107 1.4e-18 98.2 167 37.7
PSO478G4167 Papaver somniferum HOM05D002453 ORTHO05D002107 5.1e-18 96.3 178 33.7
Thhalv10018169m.g Eutrema salsugineum HOM05D002453 ORTHO05D002107 6.7e-18 95.9 167 37.1
Carub.0002s2137 Capsella rubella HOM05D002453 ORTHO05D002107 1.5e-17 94.7 167 36.5
AL2G34470 Arabidopsis lyrata HOM05D002453 ORTHO05D002107 2.6e-17 94.0 166 36.7
AT1G74580 Arabidopsis thaliana HOM05D002453 ORTHO05D002107 2.6e-17 94.0 166 36.7
BraA07t31576Z Brassica rapa HOM05D002453 ORTHO05D002107 1.1e-15 88.6 160 36.2
A07p40350 Brassica napus HOM05D002453 ORTHO05D002107 1.4e-15 88.2 160 35.6
BolC6t39902H Brassica oleracea HOM05D002453 ORTHO05D002107 1.4e-15 88.2 164 35.4
Os07g0101200 Oryza sativa ssp. japonica HOM05D002453 ORTHO05D002107 1.0e-13 82.0 67 59.7
Actinidia04897 Actinidia chinensis HOM05D002453 ORTHO05D002107 2.9e-13 80.5 51 70.6
Sabra10G0181800 Salix brachista HOM05D002453 ORTHO05D002107 1.2e-11 75.1 160 34.4
CDE06G2834 Ceratophyllum demersum HOM05D002453 ORTHO05D002107 1.0e-10 72.0 42 81.0
CDE08G0247 Ceratophyllum demersum HOM05D007486 ORTHO05D003673 7.4e-09 65.9 167 26.9
Nn1g09793 Nelumbo nucifera HOM05D002453 ORTHO05D002107 6.3e-08 62.8 141 32.6
Zm00001eb118400 Zea mays HOM05D002453 ORTHO05D002107 2.4e-07 60.8 68 50.0
Solyc02g085650.4 Solanum lycopersicum HOM05D001985 ORTHO05D000761 4.1e-07 60.1 116 28.4
MD05G1166500 Malus domestica HOM05D007486 ORTHO05D003673 9.1e-07 58.9 137 32.1
CANSAT01G2277 Cannabis sativa HOM05D007486 ORTHO05D003673 1.2e-06 58.5 151 31.1
CANSAT01G2464 Cannabis sativa HOM05D007486 ORTHO05D003673 1.2e-06 58.5 151 31.1
Sabra02G0188800 Salix brachista HOM05D007486 ORTHO05D003673 1.2e-06 58.5 107 29.9
SEGI_33348 Sequoiadendron giganteum HOM05D002453 ORTHO05D002107 1.2e-06 58.5 50 56.0
Ciclev10025762m.g Citrus clementina HOM05D000891 ORTHO05D000761 2.6e-06 57.4 127 26.8
Mapoly0001s0556 Marchantia polymorpha HOM05D006877 ORTHO05D008735 3.5e-06 57.0 117 27.4
Glyma.04G155800 Glycine max HOM05D006258 ORTHO05D007961 5.9e-06 56.2 129 28.7
CDE09G0204 Ceratophyllum demersum HOM05D002986 ORTHO05D007611 7.7e-06 55.8 65 40.0
Lj8P583T10 Lonicera japonica HOM05D004670 ORTHO05D008020 7.7e-06 55.8 149 25.5


User provided reference genes

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