Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen12g014450 Solanum pennellii HOM05D003072 ORTHO05D008464 9.2e-93 343.6 179 100.0
PGSC0003DMG400005293 Solanum tuberosum HOM05D003072 ORTHO05D008464 2.4e-48 196.1 130 79.2
CAN.G22.19 Capsicum annuum HOM05D003072 ORTHO05D008464 1.1e-45 187.2 137 74.5
Nitab4.5_0014195g0010 Nicotiana tabacum HOM05D003072 ORTHO05D008464 1.4e-40 170.2 129 69.8
Nitab4.5_0000025g0470 Nicotiana tabacum HOM05D003072 ORTHO05D008464 6.9e-40 167.9 130 67.7
Dinv38563 Davidia involucrata HOM05D003072 ORTHO05D008464 3.6e-28 129.0 112 58.9
TAR371G0662 Trochodendron aralioides HOM05D003072 ORTHO05D008464 4.4e-26 122.1 134 52.2
GSVIVG01007705001 Vitis vinifera HOM05D003072 ORTHO05D008464 7.4e-26 121.3 128 51.6
CSS0018322 Camellia sinensis var. sinensis HOM05D003072 ORTHO05D008464 4.1e-24 115.5 120 51.7
CSS0033777 Camellia sinensis var. sinensis HOM05D003072 ORTHO05D008464 7.0e-24 114.8 157 44.6
Lj5A126T85 Lonicera japonica HOM05D003072 ORTHO05D008464 7.7e-23 111.3 123 50.4
CANSAT80G0622 Cannabis sativa HOM05D003072 ORTHO05D008464 2.9e-22 109.4 110 53.6
Cfa019166 Carpinus fangiana HOM05D003072 ORTHO05D008464 6.5e-22 108.2 136 49.3
Prupe.5G170600 Prunus persica HOM05D003072 ORTHO05D008464 1.1e-21 107.5 123 50.4
vmacro16626 Vaccinium macrocarpon HOM05D003072 ORTHO05D008464 1.1e-21 107.5 137 43.8
Cc04_g12330 Coffea canephora HOM05D003072 ORTHO05D008464 1.9e-21 106.7 136 48.5
Oeu024702.3 Olea europaea HOM05D003072 ORTHO05D008464 5.5e-21 105.1 137 48.2
CiPaw.12G028300 Carya illinoinensis HOM05D003072 ORTHO05D008464 7.2e-21 104.8 106 52.8
Sabra12G0063900 Salix brachista HOM05D003072 ORTHO05D008464 7.2e-21 104.8 114 48.2
Potri.012G088700 Populus trichocarpa HOM05D003072 ORTHO05D008464 9.4e-21 104.4 113 46.9
MD14G1176700 Malus domestica HOM05D003072 ORTHO05D008464 1.6e-20 103.6 108 52.8
Migut.D01960 Erythranthe guttata HOM05D003072 ORTHO05D008464 4.7e-20 102.1 121 48.8
QL10p010881 Quercus lobata HOM05D003072 ORTHO05D008464 4.7e-20 102.1 117 47.9
Duzib068G0599 Durio zibethinus HOM05D003072 ORTHO05D008464 1.0e-19 100.9 153 43.8
Lalb_Chr23g0273311 Lupinus albus HOM05D003072 ORTHO05D008464 1.4e-19 100.5 120 45.8
MD06G1171000 Malus domestica HOM05D003072 ORTHO05D008464 1.4e-19 100.5 108 51.9
Thecc.03G018600 Theobroma cacao HOM05D003072 ORTHO05D008464 2.3e-19 99.8 153 43.8
Ca_16157_v3 Cicer arietinum L. HOM05D003072 ORTHO05D008464 3.0e-19 99.4 112 47.3
MSTRG.4363 Avicennia marina HOM05D003072 ORTHO05D008464 5.2e-19 98.6 114 49.1
Glyma.04G185500 Glycine max HOM05D003072 ORTHO05D008464 5.2e-19 98.6 113 46.9
Actinidia19109 Actinidia chinensis HOM05D003072 ORTHO05D008464 6.8e-19 98.2 132 40.9
FAN18G1595 Fragaria x ananassa HOM05D005107 ORTHO05D008464 6.8e-19 98.2 123 46.3
FAN18G3341 Fragaria x ananassa HOM05D003072 ORTHO05D008464 1.2e-18 97.4 159 42.1
TAR629G1829 Trochodendron aralioides HOM05D003072 ORTHO05D008464 1.2e-18 97.4 126 48.4
Medtr3g077500 Medicago truncatula HOM05D003072 ORTHO05D008464 1.5e-18 97.1 113 46.0
Phvul.009G176300 Phaseolus vulgaris HOM05D003072 ORTHO05D008464 1.5e-18 97.1 109 48.6
FAN04G2540 Fragaria x ananassa HOM05D003072 ORTHO05D008464 2.0e-18 96.7 159 40.9
Lalb_Chr11g0070411 Lupinus albus HOM05D003072 ORTHO05D008464 2.0e-18 96.7 141 44.0
TPR.G14918 Trifolium pratense HOM05D003072 ORTHO05D008464 5.7e-18 95.1 132 41.7
Lj1g0004806 Lotus japonicus HOM05D003072 ORTHO05D008464 9.8e-18 94.4 149 40.3
MBI10_g36534_MAGBIO Magnolia biondii HOM05D003072 ORTHO05D008464 9.8e-18 94.4 120 46.7
TWI23G0250 Tripterygium wilfordii HOM05D003072 ORTHO05D008464 9.8e-18 94.4 122 40.2
Ciclev10020708m.g Citrus clementina HOM05D003072 ORTHO05D008464 1.7e-17 93.6 127 40.2
Gorai.006G190000 Gossypium raimondii HOM05D003072 ORTHO05D008464 1.7e-17 93.6 153 40.5
Manes.06G107000 Manihot esculenta HOM05D003072 ORTHO05D008464 1.7e-17 93.6 157 41.4
FAN13G2858 Fragaria x ananassa HOM05D005107 ORTHO05D008464 2.2e-17 93.2 123 44.7
TWI14G0324 Tripterygium wilfordii HOM05D003072 ORTHO05D008464 2.2e-17 93.2 122 44.3
Aqoxy3G02847 Aquilegia oxysepala HOM05D003072 ORTHO05D008464 2.8e-17 92.8 121 43.8
COL.COLO4_30098 Corchorus olitorius HOM05D003072 ORTHO05D008464 3.7e-17 92.4 143 43.4
Psat5g115560 Pisum sativum HOM05D003072 ORTHO05D008464 3.7e-17 92.4 146 37.7
arahy.Tifrunner.gnm1.ann1.9W8DT5 Arachis hypogaea HOM05D003072 ORTHO05D008464 4.8e-17 92.0 109 45.0
FAN08G3219 Fragaria x ananassa HOM05D003072 ORTHO05D008464 4.8e-17 92.0 159 40.3
RcHm_v2.0_Chr7g0193191 Rosa chinensis HOM05D003072 ORTHO05D008464 4.8e-17 92.0 159 40.3
Gohir.D09G168400 Gossypium hirsutum HOM05D003072 ORTHO05D008464 8.3e-17 91.3 153 39.9
Nn4g22691 Nelumbo nucifera HOM05D003072 ORTHO05D008464 8.3e-17 91.3 114 50.0
arahy.Tifrunner.gnm1.ann1.UB4QBN Arachis hypogaea HOM05D003072 ORTHO05D008464 1.1e-16 90.9 109 45.0
Gohir.A09G172700 Gossypium hirsutum HOM05D003072 ORTHO05D008464 1.1e-16 90.9 153 40.5
Sed0027860 Sechium edule HOM05D003072 ORTHO05D008464 1.4e-16 90.5 112 47.3
arahy.Tifrunner.gnm1.ann1.X1G4VU Arachis hypogaea HOM05D003072 ORTHO05D008464 3.1e-16 89.4 109 44.0
SalBow5G5496 Salvia bowleyana HOM05D003072 ORTHO05D008464 3.1e-16 89.4 135 38.5
PGR044G0204 Punica granatum HOM05D003072 ORTHO05D008464 7.0e-16 88.2 132 44.7
Atru.chr9.2517 Acer truncatum HOM05D003072 ORTHO05D008464 1.6e-15 87.0 113 43.4
Glyma.06G180600 Glycine max HOM05D003072 ORTHO05D008464 2.7e-15 86.3 139 41.0
Cpa.g.sc153.4 Carica papaya HOM05D003072 ORTHO05D008464 3.5e-15 85.9 89 52.8
ClCG06G017110 Citrullus lanatus HOM05D003072 ORTHO05D008464 3.5e-15 85.9 121 46.3
CsaV3_1G001390 Cucumis sativus L. HOM05D003072 ORTHO05D008464 3.5e-15 85.9 123 47.2
DCAR_016474 Daucus carota HOM05D003072 ORTHO05D008464 3.5e-15 85.9 121 41.3
arahy.Tifrunner.gnm1.ann1.2PZF9J Arachis hypogaea HOM05D003072 ORTHO05D008464 4.5e-15 85.5 109 43.1
Rhsim12G0166200 Rhododendron simsii HOM05D003072 ORTHO05D008464 4.5e-15 85.5 64 60.9
SGA_v2.0_scaffold25G10821 Striga asiatica HOM05D003072 ORTHO05D008464 4.5e-15 85.5 141 43.3
SGA_v2.0_scaffold25G10826 Striga asiatica HOM05D003072 ORTHO05D008464 4.5e-15 85.5 120 47.5
ECA247G2325 Erigeron canadensis HOM05D003072 ORTHO05D008464 1.0e-14 84.3 114 42.1
CDE06G1157 Ceratophyllum demersum HOM05D003072 ORTHO05D008464 3.8e-14 82.4 128 39.1
Sc10g0010140 Simmondsia chinensis HOM05D003072 ORTHO05D008464 3.8e-14 82.4 109 43.1
Eucgr.K02823 Eucalyptus grandis HOM05D003072 ORTHO05D008464 6.5e-14 81.6 104 48.1
unitig_21.g20445 Utricularia gibba HOM05D003072 ORTHO05D008464 1.1e-13 80.9 84 51.2
MELO3C026285.2 Cucumis melo HOM05D003072 ORTHO05D008464 2.5e-13 79.7 139 40.3
Hund09452 Selenicereus undatus HOM05D003072 ORTHO05D008464 5.5e-13 78.6 74 51.4
Lsat_1_v5_gn_1_28241 Lactuca sativa HOM05D003072 ORTHO05D008464 9.4e-13 77.8 170 34.7
AUR62028765 Chenopodium quinoa HOM05D003072 ORTHO05D008464 2.1e-12 76.6 89 48.3
Ah.11g051460 Amaranthus hybridus HOM05D004430 ORTHO05D005088 4.7e-12 75.5 106 45.3
PSO063G3972 Papaver somniferum HOM05D003072 ORTHO05D008464 6.1e-12 75.1 115 42.6
THA.LOC104821479 Tarenaya hassleriana HOM05D003072 ORTHO05D008464 8.0e-12 74.7 128 37.5
HanXRQChr02g0035971 Helianthus annuus HOM05D003072 ORTHO05D008464 1.0e-11 74.3 118 39.8
EL10Ac5g10715 Beta vulgaris HOM05D003072 ORTHO05D008464 1.8e-11 73.6 143 36.4
AUR62008185 Chenopodium quinoa HOM05D003072 ORTHO05D008464 1.8e-11 73.6 65 56.9
Migut.O00122 Erythranthe guttata HOM05D003072 ORTHO05D008464 1.8e-11 73.6 126 42.1
PSO832G3209 Papaver somniferum HOM05D003072 ORTHO05D008464 1.5e-10 70.5 115 41.7
Thhalv10004444m.g Eutrema salsugineum HOM05D003072 ORTHO05D008464 2.8e-09 66.2 144 35.4
ATR1152G060 Amborella trichopoda HOM05D003072 ORTHO05D008464 3.7e-09 65.9 113 35.4
BcaB04g19952 Brassica carinata HOM05D003072 ORTHO05D008464 3.7e-09 65.9 129 34.1
arahy.Tifrunner.gnm1.ann1.I5Y7BI Arachis hypogaea HOM05D003072 ORTHO05D008464 6.3e-09 65.1 109 38.5
Sp2g26170 Schrenkiella parvula HOM05D003072 ORTHO05D008464 1.4e-08 63.9 135 33.3
Os01g0704200 Oryza sativa ssp. japonica HOM05D003072 ORTHO05D008464 1.8e-08 63.5 73 43.8
AT5G63040 Arabidopsis thaliana HOM05D003072 ORTHO05D008464 5.4e-08 62.0 141 34.0
Carub.0008s2375 Capsella rubella HOM05D003072 ORTHO05D008464 5.4e-08 62.0 137 33.6
CARHR276840 Cardamine hirsuta HOM05D003072 ORTHO05D008464 9.1e-08 61.2 149 32.2
Aa31LG11G630 Aethionema arabicum HOM05D003072 ORTHO05D008464 1.6e-07 60.5 63 46.0
BcaB04g19949 Brassica carinata HOM05D005107 ORTHO05D006200 2.0e-07 60.1 74 45.9
C09p09050 Brassica napus HOM05D005107 ORTHO05D006200 2.0e-07 60.1 74 45.9
BolC9t53817H Brassica oleracea HOM05D003072 ORTHO05D008464 2.0e-07 60.1 74 45.9
AL3G51110 Arabidopsis lyrata HOM05D003072 ORTHO05D008464 2.7e-07 59.7 141 34.0
A09p08000 Brassica napus HOM05D005107 ORTHO05D006200 7.7e-07 58.2 130 34.6
Zm00001eb155560 Zea mays HOM05D003072 ORTHO05D008464 1.0e-06 57.8 66 40.9
BraA09t36450Z Brassica rapa HOM05D003072 ORTHO05D008464 2.3e-06 56.6 130 34.6
SHI17121 Sapria himalayana HOM05D003072 ORTHO05D008464 2.3e-06 56.6 77 42.9
SEGI_20742 Sequoiadendron giganteum HOM05D003072 ORTHO05D008464 8.6e-06 54.7 92 34.8


User provided reference genes

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