Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen12g014410 Solanum pennellii HOM05D003072 ORTHO05D008464 5.2e-54 214.2 110 100.0
Nitab4.5_0000025g0470 Nicotiana tabacum HOM05D003072 ORTHO05D008464 5.8e-21 104.4 78 74.4
Nitab4.5_0014195g0010 Nicotiana tabacum HOM05D003072 ORTHO05D008464 7.6e-21 104.0 77 74.0
PGSC0003DMG400005293 Solanum tuberosum HOM05D003072 ORTHO05D008464 1.7e-20 102.8 78 73.1
CAN.G22.19 Capsicum annuum HOM05D003072 ORTHO05D008464 1.1e-19 100.1 77 71.4
GSVIVG01007705001 Vitis vinifera HOM05D003072 ORTHO05D008464 1.4e-19 99.8 96 61.5
Cfa019166 Carpinus fangiana HOM05D003072 ORTHO05D008464 7.1e-19 97.4 74 70.3
Haze_07541 Corylus avellana HOM05D003072 ORTHO05D008464 7.1e-19 97.4 74 70.3
QL10p010881 Quercus lobata HOM05D003072 ORTHO05D008464 7.1e-19 97.4 74 70.3
CSS0018322 Camellia sinensis var. sinensis HOM05D003072 ORTHO05D008464 1.6e-18 96.3 93 59.1
CSS0033777 Camellia sinensis var. sinensis HOM05D003072 ORTHO05D008464 1.6e-18 96.3 93 59.1
TWI23G0250 Tripterygium wilfordii HOM05D003072 ORTHO05D008464 1.6e-18 96.3 76 67.1
Oeu024702.3 Olea europaea HOM05D003072 ORTHO05D008464 2.7e-18 95.5 72 70.8
vmacro16626 Vaccinium macrocarpon HOM05D003072 ORTHO05D008464 2.7e-18 95.5 74 67.6
CiPaw.12G028300 Carya illinoinensis HOM05D003072 ORTHO05D008464 3.5e-18 95.1 74 68.9
arahy.Tifrunner.gnm1.ann1.2PZF9J Arachis hypogaea HOM05D003072 ORTHO05D008464 4.6e-18 94.7 98 59.2
PSO063G3972 Papaver somniferum HOM05D003072 ORTHO05D008464 4.6e-18 94.7 94 56.4
Migut.D01960 Erythranthe guttata HOM05D003072 ORTHO05D008464 7.8e-18 94.0 72 68.1
Lsat_1_v5_gn_1_28241 Lactuca sativa HOM05D003072 ORTHO05D008464 7.8e-18 94.0 94 60.6
SGA_v2.0_scaffold25G10826 Striga asiatica HOM05D003072 ORTHO05D008464 1.0e-17 93.6 73 65.8
Aqoxy3G02847 Aquilegia oxysepala HOM05D003072 ORTHO05D008464 1.3e-17 93.2 72 69.4
Psat5g115560 Pisum sativum HOM05D003072 ORTHO05D008464 1.3e-17 93.2 73 68.5
PGR044G0204 Punica granatum HOM05D003072 ORTHO05D008464 1.3e-17 93.2 71 67.6
Actinidia19109 Actinidia chinensis HOM05D003072 ORTHO05D008464 1.7e-17 92.8 94 58.5
arahy.Tifrunner.gnm1.ann1.9W8DT5 Arachis hypogaea HOM05D003072 ORTHO05D008464 1.7e-17 92.8 77 64.9
arahy.Tifrunner.gnm1.ann1.I5Y7BI Arachis hypogaea HOM05D003072 ORTHO05D008464 1.7e-17 92.8 77 64.9
Cc04_g12330 Coffea canephora HOM05D003072 ORTHO05D008464 1.7e-17 92.8 94 59.6
Lalb_Chr11g0070411 Lupinus albus HOM05D003072 ORTHO05D008464 1.7e-17 92.8 73 68.5
Medtr3g077500 Medicago truncatula HOM05D003072 ORTHO05D008464 2.3e-17 92.4 73 67.1
Rhsim12G0166200 Rhododendron simsii HOM05D003072 ORTHO05D008464 2.3e-17 92.4 96 56.2
Ca_16157_v3 Cicer arietinum L. HOM05D003072 ORTHO05D008464 3.0e-17 92.0 72 68.1
Cpa.g.sc153.4 Carica papaya HOM05D003072 ORTHO05D008464 3.9e-17 91.7 71 67.6
Dinv38563 Davidia involucrata HOM05D003072 ORTHO05D008464 3.9e-17 91.7 74 66.2
Nn4g22691 Nelumbo nucifera HOM05D003072 ORTHO05D008464 3.9e-17 91.7 94 57.4
arahy.Tifrunner.gnm1.ann1.UB4QBN Arachis hypogaea HOM05D003072 ORTHO05D008464 5.1e-17 91.3 77 63.6
arahy.Tifrunner.gnm1.ann1.X1G4VU Arachis hypogaea HOM05D003072 ORTHO05D008464 5.1e-17 91.3 77 63.6
CANSAT80G0622 Cannabis sativa HOM05D003072 ORTHO05D008464 5.1e-17 91.3 71 69.0
Glyma.04G185500 Glycine max HOM05D003072 ORTHO05D008464 5.1e-17 91.3 73 67.1
Glyma.06G180600 Glycine max HOM05D003072 ORTHO05D008464 5.1e-17 91.3 73 67.1
COL.COLO4_30098 Corchorus olitorius HOM05D003072 ORTHO05D008464 6.6e-17 90.9 93 57.0
PSO832G3209 Papaver somniferum HOM05D003072 ORTHO05D008464 6.6e-17 90.9 64 73.4
Potri.012G088700 Populus trichocarpa HOM05D003072 ORTHO05D008464 6.6e-17 90.9 72 66.7
Sabra12G0063900 Salix brachista HOM05D003072 ORTHO05D008464 6.6e-17 90.9 72 66.7
Thecc.03G018600 Theobroma cacao HOM05D003072 ORTHO05D008464 6.6e-17 90.9 93 57.0
Phvul.009G176300 Phaseolus vulgaris HOM05D003072 ORTHO05D008464 1.1e-16 90.1 73 67.1
SalBow5G5496 Salvia bowleyana HOM05D003072 ORTHO05D008464 1.1e-16 90.1 70 68.6
Duzib068G0599 Durio zibethinus HOM05D003072 ORTHO05D008464 1.5e-16 89.7 71 67.6
ECA247G2325 Erigeron canadensis HOM05D003072 ORTHO05D008464 1.5e-16 89.7 94 58.5
Manes.06G107000 Manihot esculenta HOM05D003072 ORTHO05D008464 1.5e-16 89.7 71 66.2
Sed0027860 Sechium edule HOM05D003072 ORTHO05D008464 1.5e-16 89.7 71 66.2
Lalb_Chr23g0273311 Lupinus albus HOM05D003072 ORTHO05D008464 1.9e-16 89.4 74 66.2
Lj1g0004806 Lotus japonicus HOM05D003072 ORTHO05D008464 3.3e-16 88.6 73 67.1
TAR629G1829 Trochodendron aralioides HOM05D003072 ORTHO05D008464 3.3e-16 88.6 74 66.2
DCAR_016474 Daucus carota HOM05D003072 ORTHO05D008464 4.3e-16 88.2 65 73.8
Migut.O00122 Erythranthe guttata HOM05D003072 ORTHO05D008464 4.3e-16 88.2 73 61.6
Prupe.5G170600 Prunus persica HOM05D003072 ORTHO05D008464 4.3e-16 88.2 76 64.5
MSTRG.4363 Avicennia marina HOM05D003072 ORTHO05D008464 7.3e-16 87.4 60 76.7
ClCG06G017110 Citrullus lanatus HOM05D003072 ORTHO05D008464 7.3e-16 87.4 71 64.8
MELO3C026285.2 Cucumis melo HOM05D003072 ORTHO05D008464 7.3e-16 87.4 71 64.8
CsaV3_1G001390 Cucumis sativus L. HOM05D003072 ORTHO05D008464 7.3e-16 87.4 71 64.8
Gohir.A09G172700 Gossypium hirsutum HOM05D003072 ORTHO05D008464 7.3e-16 87.4 71 66.2
Gohir.D09G168400 Gossypium hirsutum HOM05D003072 ORTHO05D008464 7.3e-16 87.4 71 66.2
Gorai.006G190000 Gossypium raimondii HOM05D003072 ORTHO05D008464 7.3e-16 87.4 71 66.2
TPR.G14918 Trifolium pratense HOM05D003072 ORTHO05D008464 9.6e-16 87.0 73 63.0
HanXRQChr02g0035971 Helianthus annuus HOM05D003072 ORTHO05D008464 1.6e-15 86.3 94 57.4
Ciclev10020708m.g Citrus clementina HOM05D003072 ORTHO05D008464 2.1e-15 85.9 70 64.3
CDE06G1157 Ceratophyllum demersum HOM05D003072 ORTHO05D008464 2.8e-15 85.5 94 56.4
MBI10_g36534_MAGBIO Magnolia biondii HOM05D003072 ORTHO05D008464 2.8e-15 85.5 63 74.6
MD06G1171000 Malus domestica HOM05D003072 ORTHO05D008464 2.8e-15 85.5 71 67.6
MD14G1176700 Malus domestica HOM05D003072 ORTHO05D008464 2.8e-15 85.5 71 67.6
Atru.chr9.2517 Acer truncatum HOM05D003072 ORTHO05D008464 3.6e-15 85.1 70 65.7
Sc10g0010140 Simmondsia chinensis HOM05D003072 ORTHO05D008464 3.6e-15 85.1 90 55.6
FvH4_5g05620 Fragaria vesca HOM05D003072 ORTHO05D008464 6.2e-15 84.3 73 63.0
FAN04G2540 Fragaria x ananassa HOM05D003072 ORTHO05D008464 6.2e-15 84.3 73 63.0
FAN08G3219 Fragaria x ananassa HOM05D003072 ORTHO05D008464 6.2e-15 84.3 73 63.0
FAN13G2858 Fragaria x ananassa HOM05D005107 ORTHO05D008464 6.2e-15 84.3 73 63.0
FAN18G1595 Fragaria x ananassa HOM05D005107 ORTHO05D008464 6.2e-15 84.3 73 63.0
FAN18G3341 Fragaria x ananassa HOM05D003072 ORTHO05D008464 6.2e-15 84.3 73 63.0
unitig_21.g20445 Utricularia gibba HOM05D003072 ORTHO05D008464 6.2e-15 84.3 64 70.3
CsaV3_1G029060 Cucumis sativus L. HOM05D003072 ORTHO05D008464 8.1e-15 84.0 71 62.0
Lj5A126T85 Lonicera japonica HOM05D003072 ORTHO05D008464 1.1e-14 83.6 61 75.4
Eucgr.K02823 Eucalyptus grandis HOM05D003072 ORTHO05D008464 1.4e-14 83.2 71 64.8
TAR371G0662 Trochodendron aralioides HOM05D003072 ORTHO05D008464 1.4e-14 83.2 92 53.3
RcHm_v2.0_Chr7g0193191 Rosa chinensis HOM05D003072 ORTHO05D008464 2.4e-14 82.4 72 63.9
TWI14G0324 Tripterygium wilfordii HOM05D003072 ORTHO05D008464 3.1e-14 82.0 63 68.3
THA.LOC104821479 Tarenaya hassleriana HOM05D003072 ORTHO05D008464 2.6e-13 79.0 72 61.1
EL10Ac5g10715 Beta vulgaris HOM05D003072 ORTHO05D008464 7.6e-13 77.4 60 71.7
Hund09452 Selenicereus undatus HOM05D003072 ORTHO05D008464 6.4e-12 74.3 79 55.7
Sopen06g008570 Solanum pennellii HOM05D000002 ORTHO05D000001 1.1e-11 73.6 40 87.5
ATR1152G060 Amborella trichopoda HOM05D003072 ORTHO05D008464 1.9e-11 72.8 71 56.3
Sopen08g007750 Solanum pennellii HOM05D000002 ORTHO05D000001 1.9e-11 72.8 52 67.3
AUR62028765 Chenopodium quinoa HOM05D003072 ORTHO05D008464 2.4e-11 72.4 59 69.5
Aa31LG11G630 Aethionema arabicum HOM05D003072 ORTHO05D008464 3.2e-11 72.0 64 60.9
SHI17121 Sapria himalayana HOM05D003072 ORTHO05D008464 3.2e-11 72.0 73 50.7
Sopen01g009970 Solanum pennellii HOM05D000002 ORTHO05D000001 3.2e-11 72.0 40 85.0
Sopen11g015500 Solanum pennellii HOM05D000006 ORTHO05D000001 5.4e-11 71.2 40 85.0
SEGI_20742 Sequoiadendron giganteum HOM05D003072 ORTHO05D008464 1.2e-10 70.1 71 50.7
CARHR276840 Cardamine hirsuta HOM05D003072 ORTHO05D008464 2.7e-10 68.9 66 57.6
Ah.11g051460 Amaranthus hybridus HOM05D004430 ORTHO05D005088 3.5e-10 68.6 57 68.4
Sopen04g012610 Solanum pennellii HOM05D000006 ORTHO05D000001 4.6e-10 68.2 40 80.0
AagrBONN_evm.TU.Sc2ySwM_344.2078 Anthoceros agrestis HOM05D003072 ORTHO05D008464 7.8e-10 67.4 81 48.1
Sopen01g014570 Solanum pennellii HOM05D000006 ORTHO05D000001 2.3e-09 65.9 40 77.5
AUR62008185 Chenopodium quinoa HOM05D003072 ORTHO05D008464 3.0e-09 65.5 58 63.8
BcaC04g23369 Brassica carinata HOM05D003072 ORTHO05D008464 5.1e-09 64.7 72 50.0
BolC9t53817H Brassica oleracea HOM05D003072 ORTHO05D008464 5.1e-09 64.7 72 50.0
BraA09t36450Z Brassica rapa HOM05D003072 ORTHO05D008464 5.1e-09 64.7 72 50.0
Thhalv10004444m.g Eutrema salsugineum HOM05D003072 ORTHO05D008464 6.6e-09 64.3 55 67.3
Sopen11g017730 Solanum pennellii HOM05D000006 ORTHO05D000001 6.6e-09 64.3 40 77.5
Pp3c21_4590 Physcomitrium patens HOM05D003072 ORTHO05D008464 8.7e-09 63.9 71 46.5
Sp2g26170 Schrenkiella parvula HOM05D003072 ORTHO05D008464 8.7e-09 63.9 55 65.5
AL3G51110 Arabidopsis lyrata HOM05D003072 ORTHO05D008464 1.1e-08 63.5 55 65.5
AT5G63040 Arabidopsis thaliana HOM05D003072 ORTHO05D008464 4.3e-08 61.6 54 64.8
Mapoly0071s0121 Marchantia polymorpha HOM05D003072 ORTHO05D008464 5.6e-08 61.2 70 45.7
Mapoly0229s0007 Marchantia polymorpha HOM05D003072 ORTHO05D008464 5.6e-08 61.2 70 45.7
Carub.0008s2375 Capsella rubella HOM05D003072 ORTHO05D008464 1.6e-07 59.7 54 63.0
Zm00001eb155560 Zea mays HOM05D003072 ORTHO05D008464 2.8e-07 58.9 59 55.9
BcaB04g19952 Brassica carinata HOM05D003072 ORTHO05D008464 1.4e-06 56.6 55 60.0


User provided reference genes

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