Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen12g013690 Solanum pennellii HOM05D006320 ORTHO05D007069 8.8e-32 139.8 78 100.0
Nitab4.5_0002326g0030 Nicotiana tabacum HOM05D006320 ORTHO05D007069 1.5e-26 122.5 78 89.7
Nitab4.5_0000172g0580 Nicotiana tabacum HOM05D006320 ORTHO05D007069 1.2e-25 119.4 76 89.5
Hma1.2p1_1191F.1_g265490 Hydrangea macrophylla HOM05D006320 ORTHO05D007069 2.1e-25 118.6 74 90.5
CDE02G4101 Ceratophyllum demersum HOM05D006320 ORTHO05D007069 1.0e-24 116.3 75 88.0
RhsimMtG0004200 Rhododendron simsii HOM05D006320 ORTHO05D007069 2.3e-24 115.2 75 88.0
PGSC0003DMG400002202 Solanum tuberosum HOM05D006320 ORTHO05D007069 4.0e-24 114.4 71 93.0
Dinv06672 Davidia involucrata HOM05D001750 ORTHO05D001825 5.2e-24 114.0 75 86.7
Dinv18904 Davidia involucrata HOM05D001750 ORTHO05D001825 5.2e-24 114.0 75 86.7
Hund27557 Selenicereus undatus HOM05D001750 ORTHO05D007069 8.8e-24 113.2 75 86.7
ECA041G0001 Erigeron canadensis HOM05D001750 ORTHO05D001825 2.0e-23 112.1 75 86.7
ECA234G4202 Erigeron canadensis HOM05D006320 ORTHO05D007069 2.0e-23 112.1 75 86.7
HanXRQMTg0579361 Helianthus annuus HOM05D001750 ORTHO05D001825 2.0e-23 112.1 75 86.7
Lsat_1_v5_gn_8_111781 Lactuca sativa HOM05D006320 ORTHO05D007069 2.0e-23 112.1 75 86.7
Ah.10g028420 Amaranthus hybridus HOM05D006320 ORTHO05D007069 2.6e-23 111.7 75 85.3
Dinv06715 Davidia involucrata HOM05D006320 ORTHO05D007069 3.4e-23 111.3 71 88.7
RcHm_v2.0_MTg0498361 Rosa chinensis HOM05D006320 ORTHO05D007069 3.4e-23 111.3 75 85.3
PGR028G0009 Punica granatum HOM05D006320 ORTHO05D007069 7.5e-23 110.2 75 84.0
CANSAT16G0023 Cannabis sativa HOM05D006320 ORTHO05D007069 9.8e-23 109.8 75 85.3
Sed0021840 Sechium edule HOM05D006320 ORTHO05D007069 1.3e-22 109.4 75 84.0
CsaV3_UNG209120 Cucumis sativus L. HOM05D006320 ORTHO05D007069 2.2e-22 108.6 75 84.0
SalBow1G1899 Salvia bowleyana HOM05D006320 ORTHO05D007069 2.2e-22 108.6 74 85.1
Aqoxy12s033 Aquilegia oxysepala HOM05D006320 ORTHO05D007069 2.8e-22 108.2 74 85.1
AL5G20340 Arabidopsis lyrata HOM05D006320 ORTHO05D007069 2.8e-22 108.2 74 85.1
AT2G07671 Arabidopsis thaliana HOM05D006320 ORTHO05D007069 2.8e-22 108.2 74 85.1
ATMG01080 Arabidopsis thaliana HOM05D006320 ORTHO05D007069 2.8e-22 108.2 74 85.1
BolSC28t60384H Brassica oleracea HOM05D006320 ORTHO05D007069 2.8e-22 108.2 74 85.1
BolSC28t60392H Brassica oleracea HOM05D006320 ORTHO05D007069 2.8e-22 108.2 74 85.1
BolSC28t60418H Brassica oleracea HOM05D006320 ORTHO05D007069 2.8e-22 108.2 74 85.1
BraSC224t45817Z Brassica rapa HOM05D006320 ORTHO05D007069 2.8e-22 108.2 74 85.1
Thhalv10023008m.g Eutrema salsugineum HOM05D006320 ORTHO05D007069 2.8e-22 108.2 74 85.1
arahy.Tifrunner.gnm1.ann1.5U23EP Arachis hypogaea HOM05D006320 ORTHO05D007069 3.7e-22 107.8 74 85.1
arahy.Tifrunner.gnm1.ann1.YTYD5C Arachis hypogaea HOM05D006320 ORTHO05D007069 3.7e-22 107.8 74 85.1
CARHR287930 Cardamine hirsuta HOM05D006320 ORTHO05D007069 3.7e-22 107.8 74 83.8
Lalb_Chr00c24g0406831 Lupinus albus HOM05D006320 ORTHO05D007069 3.7e-22 107.8 74 85.1
Lalb_Chr11g0070071 Lupinus albus HOM05D006320 ORTHO05D007069 3.7e-22 107.8 74 85.1
Phvul.005G088454 Phaseolus vulgaris HOM05D006320 ORTHO05D007069 3.7e-22 107.8 74 85.1
CAN.G547.1 Capsicum annuum HOM05D006320 ORTHO05D007069 8.3e-22 106.7 67 91.0
ECA039G0010 Erigeron canadensis HOM05D001750 ORTHO05D001825 8.3e-22 106.7 72 86.1
Gohir.D07G024400 Gossypium hirsutum HOM05D006320 ORTHO05D007069 1.1e-21 106.3 76 80.3
AUR62042330 Chenopodium quinoa HOM05D006320 ORTHO05D007069 2.4e-21 105.1 72 86.1
Cfa022996 Carpinus fangiana HOM05D001750 ORTHO05D001825 3.1e-21 104.8 75 81.3
LjContig00439g0017906 Lotus japonicus HOM05D006320 ORTHO05D007069 5.4e-21 104.0 74 82.4
LjContig00446g0026709 Lotus japonicus HOM05D006320 ORTHO05D007069 5.4e-21 104.0 74 82.4
Aa31sc483G20 Aethionema arabicum HOM05D006320 ORTHO05D007069 9.1e-21 103.2 74 82.4
GSVIVG01029662001 Vitis vinifera HOM05D006320 ORTHO05D007069 9.1e-21 103.2 71 84.5
SHI40315 Sapria himalayana HOM05D006320 ORTHO05D007069 1.2e-20 102.8 74 81.1
Phvul.011G124000 Phaseolus vulgaris HOM05D006320 ORTHO05D007069 1.6e-20 102.4 74 81.1
C01p34910 Brassica napus HOM05D006320 ORTHO05D007069 2.0e-20 102.1 70 84.3
BolC1t03457H Brassica oleracea HOM05D006320 ORTHO05D007069 2.0e-20 102.1 70 84.3
SHI36772 Sapria himalayana HOM05D000743 ORTHO05D000580 2.0e-20 102.1 75 78.7
SHI36783 Sapria himalayana HOM05D000743 ORTHO05D000580 2.0e-20 102.1 75 78.7
Sc08g0004920 Simmondsia chinensis HOM05D006320 ORTHO05D007069 2.0e-20 102.1 75 80.0
arahy.Tifrunner.gnm1.ann1.XSHW5Z Arachis hypogaea HOM05D006320 ORTHO05D007069 4.5e-20 100.9 68 85.3
SHI36586 Sapria himalayana HOM05D000743 ORTHO05D000580 7.7e-20 100.1 74 77.0
C01p34830 Brassica napus HOM05D006320 ORTHO05D007069 1.0e-19 99.8 72 80.6
CANSAT21G1924 Cannabis sativa HOM05D006320 ORTHO05D007069 1.0e-19 99.8 72 81.9
Lalb_Chr10g0093911 Lupinus albus HOM05D006320 ORTHO05D007069 3.8e-19 97.8 74 78.4
SHI46272 Sapria himalayana HOM05D000743 ORTHO05D000580 3.8e-19 97.8 74 75.7
SHI39988 Sapria himalayana HOM05D006320 ORTHO05D007069 5.0e-19 97.4 71 80.3
SHI54307 Sapria himalayana HOM05D006320 ORTHO05D007069 5.0e-19 97.4 71 80.3
Nitab4.5_0002418g0080 Nicotiana tabacum HOM05D006320 ORTHO05D007069 6.6e-19 97.1 74 74.3
Nitab4.5_0001152g0710 Nicotiana tabacum HOM05D006320 ORTHO05D007069 1.1e-18 96.3 71 77.5
SHI35237 Sapria himalayana HOM05D006320 ORTHO05D007069 1.1e-18 96.3 71 78.9
SHI36018 Sapria himalayana HOM05D000743 ORTHO05D000580 1.1e-18 96.3 74 75.7
SHI46360 Sapria himalayana HOM05D006320 ORTHO05D007069 1.1e-18 96.3 71 78.9
SalBow6G3944 Salvia bowleyana HOM05D006320 ORTHO05D007069 1.5e-18 95.9 73 76.7
SHI39753 Sapria himalayana HOM05D006320 ORTHO05D007069 1.9e-18 95.5 71 78.9
SHI34605 Sapria himalayana HOM05D001560 ORTHO05D003613 3.3e-18 94.7 73 76.7
SalBow8G4348 Salvia bowleyana HOM05D006320 ORTHO05D007069 4.2e-18 94.4 74 79.7
SHI15099 Sapria himalayana HOM05D006320 ORTHO05D007069 4.2e-18 94.4 67 82.1
SHI35484 Sapria himalayana HOM05D006320 ORTHO05D007069 4.2e-18 94.4 71 78.9
SHI38846 Sapria himalayana HOM05D006320 ORTHO05D007069 4.2e-18 94.4 71 76.1
SHI37011 Sapria himalayana HOM05D000743 ORTHO05D000580 5.5e-18 94.0 74 73.0
SHI48649 Sapria himalayana HOM05D006320 ORTHO05D007069 5.5e-18 94.0 71 77.5
SHI36936 Sapria himalayana HOM05D000743 ORTHO05D000580 9.5e-18 93.2 74 73.0
Psat1g120760 Pisum sativum HOM05D012609 ORTHO05D007069 1.2e-17 92.8 67 80.6
SHI53429 Sapria himalayana HOM05D006320 ORTHO05D007069 1.6e-17 92.4 71 77.5
Lsat_1_v5_gn_7_80061 Lactuca sativa HOM05D006320 ORTHO05D007069 2.1e-17 92.0 75 72.0
SHI35327 Sapria himalayana HOM05D001560 ORTHO05D003613 2.8e-17 91.7 71 73.2
SHI36381 Sapria himalayana HOM05D001560 ORTHO05D003613 6.1e-17 90.5 67 76.1
SGA_v2.0_scaffold255G45504 Striga asiatica HOM05D006320 ORTHO05D007069 6.1e-17 90.5 60 85.0
SHI34615 Sapria himalayana HOM05D000743 ORTHO05D000580 1.0e-16 89.7 74 70.3
SHI53047 Sapria himalayana HOM05D006320 ORTHO05D007069 1.4e-16 89.4 71 74.6
SHI37852 Sapria himalayana HOM05D006320 ORTHO05D007069 1.8e-16 89.0 74 73.0
SHI27343 Sapria himalayana HOM05D006320 ORTHO05D007069 2.3e-16 88.6 71 74.6
SHI49662 Sapria himalayana HOM05D006320 ORTHO05D007069 5.2e-16 87.4 71 76.1
SHI52535 Sapria himalayana HOM05D006320 ORTHO05D007069 8.9e-16 86.7 65 75.4
CAN.G761.5 Capsicum annuum HOM05D012609 ORTHO05D007069 1.2e-15 86.3 57 87.7
SHI34625 Sapria himalayana HOM05D000743 ORTHO05D000580 1.2e-15 86.3 68 73.5
Sc08g0004610 Simmondsia chinensis HOM05D006320 ORTHO05D007069 1.2e-15 86.3 75 72.0
SHI50161 Sapria himalayana HOM05D006320 ORTHO05D007069 1.5e-15 85.9 71 73.2
SHI42051 Sapria himalayana HOM05D006320 ORTHO05D007069 3.4e-15 84.7 71 71.8
SEGI_10818 Sequoiadendron giganteum HOM05D006320 ORTHO05D007069 3.4e-15 84.7 75 70.7
SHI37138 Sapria himalayana HOM05D006320 ORTHO05D007069 5.7e-15 84.0 65 73.8
SHI41242 Sapria himalayana HOM05D006320 ORTHO05D007069 7.5e-15 83.6 70 72.9
SHI34993 Sapria himalayana HOM05D006320 ORTHO05D007069 1.3e-14 82.8 62 77.4
SHI35481 Sapria himalayana HOM05D000890 ORTHO05D007069 1.3e-14 82.8 57 82.5
SHI36574 Sapria himalayana HOM05D006320 ORTHO05D007069 1.3e-14 82.8 64 75.0
SHI39076 Sapria himalayana HOM05D006320 ORTHO05D007069 1.3e-14 82.8 71 70.4
SHI49633 Sapria himalayana HOM05D006320 ORTHO05D007069 1.3e-14 82.8 65 72.3
Nitab4.5_0000172g1200 Nicotiana tabacum HOM05D007924 ORTHO05D007069 1.7e-14 82.4 65 73.8
SHI50287 Sapria himalayana HOM05D006320 ORTHO05D007069 2.9e-14 81.6 60 76.7
Cfa021370 Carpinus fangiana HOM05D002864 ORTHO05D008485 3.7e-14 81.3 57 80.7
SHI51203 Sapria himalayana HOM05D006320 ORTHO05D007069 4.9e-14 80.9 59 78.0
SHI38465 Sapria himalayana HOM05D000743 ORTHO05D000580 8.3e-14 80.1 103 53.4
SHI39778 Sapria himalayana HOM05D006320 ORTHO05D007069 1.1e-13 79.7 62 75.8
SHI47782 Sapria himalayana HOM05D006320 ORTHO05D007069 1.1e-13 79.7 59 76.3
SHI47632 Sapria himalayana HOM05D006320 ORTHO05D007069 1.8e-13 79.0 59 76.3
SHI38101 Sapria himalayana HOM05D000743 ORTHO05D000580 2.4e-13 78.6 59 74.6
Nitab4.5_0002404g0040 Nicotiana tabacum HOM05D006320 ORTHO05D007069 4.1e-13 77.8 76 64.5
SHI37168 Sapria himalayana HOM05D006320 ORTHO05D007069 4.1e-13 77.8 65 70.8
CiPaw.06G021700 Carya illinoinensis HOM05D006320 ORTHO05D007069 9.2e-13 76.6 57 75.4
Nitab4.5_0005246g0040 Nicotiana tabacum HOM05D007924 ORTHO05D007069 2.7e-12 75.1 53 81.1
SHI36370 Sapria himalayana HOM05D006320 ORTHO05D007069 3.5e-12 74.7 60 73.3
SHI40933 Sapria himalayana HOM05D000743 ORTHO05D000580 3.5e-12 74.7 61 70.5
Manes.04G128250 Manihot esculenta HOM05D006320 ORTHO05D007069 4.6e-12 74.3 46 89.1
Cre17.g731950 Chlamydomonas reinhardtii HOM05D006320 ORTHO05D007069 1.1e-10 69.7 72 54.2
Cre17.g732000 Chlamydomonas reinhardtii HOM05D006320 ORTHO05D007069 1.1e-10 69.7 72 54.2
Haze_26208 Corylus avellana HOM05D006320 ORTHO05D007069 1.5e-10 69.3 70 55.7
Haze_26209 Corylus avellana HOM05D006320 ORTHO05D007069 1.5e-10 69.3 70 55.7
Peaxi162Scf00828g00512 Petunia axillaris HOM05D006320 ORTHO05D007069 2.5e-10 68.6 49 79.6
Peaxi162Scf03787g00001 Petunia axillaris HOM05D006320 ORTHO05D007069 2.5e-10 68.6 49 79.6
SHI25012 Sapria himalayana HOM05D006320 ORTHO05D007069 3.3e-10 68.2 74 58.1
SHI41650 Sapria himalayana HOM05D000743 ORTHO05D000580 4.3e-10 67.8 54 72.2
EL10Ac6g14143 Beta vulgaris HOM05D010007 ORTHO05D007069 7.3e-10 67.0 44 81.8
Nitab4.5_0000172g1000 Nicotiana tabacum HOM05D006320 ORTHO05D007069 7.3e-10 67.0 67 62.7
SHI39478 Sapria himalayana HOM05D006320 ORTHO05D007069 7.3e-10 67.0 53 71.7
TAR022G0003 Trochodendron aralioides HOM05D006320 ORTHO05D007069 9.5e-10 66.6 72 55.6
Os01g0899275 Oryza sativa ssp. japonica HOM05D006320 ORTHO05D007069 1.6e-09 65.9 40 90.0
SHI36078 Sapria himalayana HOM05D000743 ORTHO05D007069 1.6e-09 65.9 49 75.5
Nitab4.5_0001152g0490 Nicotiana tabacum HOM05D006320 ORTHO05D007069 3.6e-09 64.7 64 65.6
Os01g0899350 Oryza sativa ssp. japonica HOM05D006320 ORTHO05D007069 8.0e-09 63.5 40 87.5
SHI39121 Sapria himalayana HOM05D000743 ORTHO05D000580 8.0e-09 63.5 49 71.4
HanXRQChr08g0236091 Helianthus annuus HOM05D006320 ORTHO05D007069 1.4e-08 62.8 74 56.8
HanXRQMTg0579331 Helianthus annuus HOM05D006320 ORTHO05D007069 1.4e-08 62.8 74 56.8
Gorai.001G163400 Gossypium raimondii HOM05D001750 ORTHO05D001825 1.8e-08 62.4 81 56.8
Peaxi162Scf00446g00053 Petunia axillaris HOM05D006320 ORTHO05D007069 1.8e-08 62.4 37 86.5
SHI51623 Sapria himalayana HOM05D006320 ORTHO05D007069 2.3e-08 62.0 48 75.0
HanXRQChr16g0504511 Helianthus annuus HOM05D006320 ORTHO05D007069 5.2e-08 60.8 73 56.2
Mapoly3785s0001 Marchantia polymorpha HOM05D006320 ORTHO05D007069 5.2e-08 60.8 71 50.7
CiPaw.04G019500 Carya illinoinensis HOM05D006320 ORTHO05D007069 6.8e-08 60.5 73 56.2
Lsat_1_v5_gn_3_89840 Lactuca sativa HOM05D006320 ORTHO05D007069 6.8e-08 60.5 54 68.5
ATMG00040 Arabidopsis thaliana HOM05D010793 ORTHO05D011945 1.5e-07 59.3 42 83.3
CARHR282610 Cardamine hirsuta HOM05D010793 ORTHO05D011945 1.5e-07 59.3 42 83.3
Solyc10g049590.1 Solanum lycopersicum HOM05D000216 ORTHO05D007069 1.5e-07 59.3 37 91.9
C04p27420 Brassica napus HOM05D006320 ORTHO05D007069 2.6e-07 58.5 47 76.6
TAR424G0002 Trochodendron aralioides HOM05D006320 ORTHO05D007069 4.4e-07 57.8 57 57.9
SHI43389 Sapria himalayana HOM05D000743 ORTHO05D000580 2.9e-06 55.1 63 57.1
Nitab4.5_0010033g0150 Nicotiana tabacum HOM05D006320 ORTHO05D007069 6.4e-06 53.9 42 73.8
Nitab4.5_0000859g0030 Nicotiana tabacum HOM05D006604 ORTHO05D007974 8.3e-06 53.5 36 83.3


User provided reference genes

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