Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen12g011710 Solanum pennellii HOM05D006234 ORTHO05D007813 1.8e-145 519.2 263 100.0
PGSC0003DMG401026661 Solanum tuberosum HOM05D006234 ORTHO05D007813 9.6e-131 470.3 296 84.1
Nitab4.5_0000025g0560 Nicotiana tabacum HOM05D006234 ORTHO05D007813 3.5e-117 425.2 283 78.8
Peaxi162Scf00255g01121 Petunia axillaris HOM05D006234 ORTHO05D007813 4.1e-113 411.8 285 77.2
Nitab4.5_0001514g0060 Nicotiana tabacum HOM05D006234 ORTHO05D007813 1.2e-109 400.2 279 76.7
COL.COLO4_30066 Corchorus olitorius HOM05D006234 ORTHO05D007813 4.5e-104 381.7 219 84.5
Sc10g0010120 Simmondsia chinensis HOM05D006234 ORTHO05D007813 5.0e-103 378.3 214 85.0
Hma1.2p1_0592F.1_g185420 Hydrangea macrophylla HOM05D006234 ORTHO05D007813 8.5e-103 377.5 266 73.3
vmacro16618 Vaccinium macrocarpon HOM05D006234 ORTHO05D007813 1.1e-102 377.1 246 76.8
Atru.chr9.2492 Acer truncatum HOM05D006234 ORTHO05D007813 3.2e-102 375.6 215 83.3
AUR62030948 Chenopodium quinoa HOM05D006234 ORTHO05D007813 7.9e-101 370.9 268 70.5
CSS0047520 Camellia sinensis var. sinensis HOM05D006234 ORTHO05D007813 6.7e-100 367.9 239 77.0
CSS0048541 Camellia sinensis var. sinensis HOM05D006234 ORTHO05D007813 6.7e-100 367.9 239 77.0
Glyma.17G088400 Glycine max HOM05D006234 ORTHO05D007813 1.1e-99 367.1 258 70.5
Rhsim12G0165600 Rhododendron simsii HOM05D006234 ORTHO05D007813 3.3e-99 365.5 279 68.5
Eucgr.K02833 Eucalyptus grandis HOM05D006234 ORTHO05D007813 5.7e-99 364.8 217 82.0
Glyma.05G038600 Glycine max HOM05D006234 ORTHO05D007813 5.7e-99 364.8 225 79.6
GSVIVG01007727001 Vitis vinifera HOM05D006234 ORTHO05D007813 7.4e-99 364.4 264 72.0
EL10Ac5g10733 Beta vulgaris HOM05D006234 ORTHO05D007813 2.2e-98 362.8 270 69.3
Ciclev10021475m.g Citrus clementina HOM05D006234 ORTHO05D007813 4.8e-98 361.7 217 80.2
TPR.G37565 Trifolium pratense HOM05D006234 ORTHO05D007813 1.8e-97 359.8 228 77.6
CAN.G263.4 Capsicum annuum HOM05D006234 ORTHO05D007813 2.4e-97 359.4 233 80.7
Hund09446 Selenicereus undatus HOM05D006234 ORTHO05D007813 4.1e-97 358.6 243 74.1
Lalb_Chr13g0297731 Lupinus albus HOM05D006234 ORTHO05D007813 5.3e-97 358.2 230 77.4
SalBow5G5218 Salvia bowleyana HOM05D006234 ORTHO05D007813 2.0e-96 356.3 230 77.8
Gohir.A12G274800 Gossypium hirsutum HOM05D006234 ORTHO05D007813 1.7e-95 353.2 219 79.5
Medtr4g105610 Medicago truncatula HOM05D006234 ORTHO05D007813 2.2e-95 352.8 256 70.3
Gohir.D12G275500 Gossypium hirsutum HOM05D006234 ORTHO05D007813 8.5e-95 350.9 219 79.0
Gorai.008G296000 Gossypium raimondii HOM05D006234 ORTHO05D007813 8.5e-95 350.9 219 79.0
Oeu020907.1 Olea europaea HOM05D006234 ORTHO05D007813 4.2e-94 348.6 237 75.1
Potri.012G082300 Populus trichocarpa HOM05D006234 ORTHO05D007813 9.4e-94 347.4 248 71.4
FAN08G0279 Fragaria x ananassa HOM05D006234 ORTHO05D007813 1.6e-93 346.7 224 76.3
Hund02751 Selenicereus undatus HOM05D006234 ORTHO05D007813 1.6e-93 346.7 260 68.1
Cc04_g12080 Coffea canephora HOM05D006234 ORTHO05D007813 2.7e-93 345.9 221 79.2
Lj4g0025683 Lotus japonicus HOM05D006234 ORTHO05D007813 2.7e-93 345.9 223 77.6
SGA_v2.0_scaffold114G31825 Striga asiatica HOM05D006234 ORTHO05D007813 3.0e-92 342.4 262 68.3
CANSAT80G1835 Cannabis sativa HOM05D006234 ORTHO05D007813 5.2e-92 341.7 215 78.1
Lj9A446T64 Lonicera japonica HOM05D006234 ORTHO05D007813 5.2e-92 341.7 234 73.9
Ah.02g110560 Amaranthus hybridus HOM05D006234 ORTHO05D007813 1.5e-91 340.1 221 76.0
Manes.14G064600 Manihot esculenta HOM05D006234 ORTHO05D007813 1.5e-91 340.1 221 76.9
Potri.015G078100 Populus trichocarpa HOM05D006234 ORTHO05D007813 3.3e-91 339.0 215 79.1
Zm00001eb345780 Zea mays HOM05D006234 ORTHO05D007813 7.4e-91 337.8 213 76.1
THA.LOC104809262 Tarenaya hassleriana HOM05D006234 ORTHO05D007813 9.7e-91 337.4 220 76.4
Thecc.03G014200 Theobroma cacao HOM05D006234 ORTHO05D007813 2.2e-90 336.3 217 77.0
arahy.Tifrunner.gnm1.ann1.ZL3RZ2 Arachis hypogaea HOM05D006234 ORTHO05D007813 8.2e-90 334.3 232 72.4
arahy.Tifrunner.gnm1.ann1.I5PLYK Arachis hypogaea HOM05D006234 ORTHO05D007813 1.1e-89 334.0 232 72.8
HPP92_001303 Vanilla planifolia HOM05D006234 ORTHO05D007813 1.1e-89 334.0 217 74.2
Sabra12G0058900 Salix brachista HOM05D006234 ORTHO05D007813 1.4e-89 333.6 217 77.0
CiPaw.12G027800 Carya illinoinensis HOM05D006234 ORTHO05D007813 2.4e-89 332.8 237 70.9
SGA_v2.0_scaffold90G27902 Striga asiatica HOM05D006234 ORTHO05D007813 3.1e-89 332.4 236 73.3
Phvul.003G201500 Phaseolus vulgaris HOM05D006234 ORTHO05D007813 3.5e-88 328.9 225 72.9
SalBow6G3516 Salvia bowleyana HOM05D006234 ORTHO05D007813 4.5e-88 328.6 189 84.7
unitig_60.g25412 Utricularia gibba HOM05D006234 ORTHO05D007813 4.5e-88 328.6 219 75.3
FAN13G1809 Fragaria x ananassa HOM05D006234 ORTHO05D007813 1.3e-87 327.0 199 78.4
Cfa019148 Carpinus fangiana HOM05D006234 ORTHO05D007813 1.7e-87 326.6 212 76.9
VMungo1215G2331 Vigna mungo HOM05D006234 ORTHO05D007813 2.9e-87 325.9 194 82.5
Haze_07514 Corylus avellana HOM05D006234 ORTHO05D007813 3.8e-87 325.5 212 76.4
PGR044G0892 Punica granatum HOM05D006234 ORTHO05D007813 8.5e-87 324.3 223 72.2
Migut.O00096 Erythranthe guttata HOM05D006234 ORTHO05D007813 1.1e-86 323.9 236 69.9
Sabra15G0102700 Salix brachista HOM05D006234 ORTHO05D007813 2.5e-86 322.8 245 69.0
Nn4g22716 Nelumbo nucifera HOM05D006234 ORTHO05D007813 4.2e-86 322.0 255 64.7
MD14G1178600 Malus domestica HOM05D006234 ORTHO05D007813 9.4e-86 320.9 223 71.3
Aqoxy3G02888 Aquilegia oxysepala HOM05D006234 ORTHO05D007813 1.2e-85 320.5 241 68.0
QL10p010716 Quercus lobata HOM05D006234 ORTHO05D007813 2.1e-85 319.7 244 66.8
Lsat_1_v5_gn_5_15020 Lactuca sativa HOM05D006234 ORTHO05D007813 1.0e-84 317.4 219 71.2
RcHm_v2.0_Chr7g0193391 Rosa chinensis HOM05D006234 ORTHO05D007813 1.4e-84 317.0 215 73.5
QL10p011029 Quercus lobata HOM05D006234 ORTHO05D007813 1.8e-84 316.6 213 73.7
VMungo1309G2926 Vigna mungo HOM05D006234 ORTHO05D007813 1.8e-84 316.6 212 70.3
MSTRG.9679 Avicennia marina HOM05D006234 ORTHO05D007813 3.0e-84 315.8 215 73.5
MBI10_g27998_MAGBIO Magnolia biondii HOM05D006234 ORTHO05D007813 4.0e-84 315.5 181 85.6
Sed0024030 Sechium edule HOM05D006234 ORTHO05D007813 4.0e-84 315.5 214 72.4
FAN04G0097 Fragaria x ananassa HOM05D006234 ORTHO05D007813 5.2e-84 315.1 218 71.6
PSO063G7211 Papaver somniferum HOM05D006234 ORTHO05D007813 6.7e-84 314.7 214 72.9
MD06G1172700 Malus domestica HOM05D006234 ORTHO05D007813 2.0e-83 313.2 222 70.3
PSO832G4587 Papaver somniferum HOM05D006234 ORTHO05D007813 2.0e-83 313.2 214 72.4
FvH4_5g05440 Fragaria vesca HOM05D006234 ORTHO05D007813 2.6e-83 312.8 215 72.1
FAN18G0739 Fragaria x ananassa HOM05D006234 ORTHO05D007813 2.6e-83 312.8 215 72.1
MELO3C002271.2 Cucumis melo HOM05D006234 ORTHO05D007813 4.4e-83 312.0 214 71.5
CsaV3_1G008570 Cucumis sativus L. HOM05D006234 ORTHO05D007813 4.4e-83 312.0 214 71.5
Phvul.009G177500 Phaseolus vulgaris HOM05D006234 ORTHO05D007813 1.7e-82 310.1 216 68.1
FAN18G3270 Fragaria x ananassa HOM05D006234 ORTHO05D007813 2.2e-82 309.7 215 71.6
HanXRQChr05g0155761 Helianthus annuus HOM05D006234 ORTHO05D007813 6.3e-82 308.1 209 72.2
Os05g0170800 Oryza sativa ssp. japonica HOM05D006234 ORTHO05D007813 1.6e-80 303.5 213 70.0
SalBow6G2400 Salvia bowleyana HOM05D006234 ORTHO05D007813 1.6e-80 303.5 215 71.6
ClCG01G013210 Citrullus lanatus HOM05D006234 ORTHO05D007813 4.5e-80 302.0 214 70.6
Lj1g0005957 Lotus japonicus HOM05D006234 ORTHO05D007813 5.9e-80 301.6 256 60.5
SEGI_35494 Sequoiadendron giganteum HOM05D006234 ORTHO05D007813 5.9e-80 301.6 212 71.2
arahy.Tifrunner.gnm1.ann1.HN9NVD Arachis hypogaea HOM05D006234 ORTHO05D007813 7.7e-80 301.2 252 61.1
Glyma.04G184400 Glycine max HOM05D006234 ORTHO05D007813 3.2e-78 295.8 219 65.3
Duzib205G1984 Durio zibethinus HOM05D006234 ORTHO05D007813 7.2e-78 294.7 219 67.6
TAR622G1324 Trochodendron aralioides HOM05D006234 ORTHO05D007813 1.2e-77 293.9 221 69.7
ECA246G1070 Erigeron canadensis HOM05D006234 ORTHO05D007813 4.7e-77 292.0 218 67.0
AUR62008196 Chenopodium quinoa HOM05D006234 ORTHO05D007813 1.4e-76 290.4 268 59.3
Zm00001eb124590 Zea mays HOM05D006234 ORTHO05D007813 5.2e-76 288.5 215 67.4
HanXRQChr05g0132691 Helianthus annuus HOM05D006234 ORTHO05D007813 5.7e-75 285.0 184 74.5
Nn3g16823 Nelumbo nucifera HOM05D006234 ORTHO05D007813 5.7e-75 285.0 255 59.6
TAR629G2947 Trochodendron aralioides HOM05D006234 ORTHO05D007813 5.7e-75 285.0 251 61.0
Glyma.06G181500 Glycine max HOM05D006234 ORTHO05D007813 1.8e-73 280.0 222 62.2
Manes.06G106000 Manihot esculenta HOM05D006234 ORTHO05D007813 4.1e-73 278.9 184 76.1
Cpa.g.sc685.2 Carica papaya HOM05D006234 ORTHO05D007813 2.0e-72 276.6 153 84.3
arahy.Tifrunner.gnm1.ann1.68I129 Arachis hypogaea HOM05D006234 ORTHO05D007813 2.1e-69 266.5 251 56.6
Solyc12g021360.3 Solanum lycopersicum HOM05D006234 ORTHO05D007813 1.6e-64 250.4 147 90.5
CDE04G1656 Ceratophyllum demersum HOM05D006234 ORTHO05D007813 2.7e-64 249.6 237 56.5
Dinv38575 Davidia involucrata HOM05D006234 ORTHO05D007813 7.3e-62 241.5 163 77.3
Actinidia19103 Actinidia chinensis HOM05D006234 ORTHO05D007813 2.9e-58 229.6 122 86.9
Aqoxy6G01962 Aquilegia oxysepala HOM05D006234 ORTHO05D007813 6.8e-52 208.4 134 75.4
Prupe.5G172000 Prunus persica HOM05D006234 ORTHO05D007813 4.4e-51 205.7 145 71.0
SalBow1G2571 Salvia bowleyana HOM05D006234 ORTHO05D007813 5.4e-49 198.7 191 59.7
Pp3c21_1540 Physcomitrium patens HOM05D006234 ORTHO05D007813 2.3e-47 193.4 219 48.9
MCO05G167 Micromonas commoda HOM05D006234 ORTHO05D007813 4.7e-37 159.1 176 46.6
Psat5g000720 Pisum sativum HOM05D006234 ORTHO05D007813 1.4e-36 157.5 132 62.9
Ca_21933_v3 Cicer arietinum L. HOM05D000957 ORTHO05D000754 2.9e-34 149.8 137 62.8
SalBow8G5646 Salvia bowleyana HOM05D006234 ORTHO05D007813 7.1e-33 145.2 179 48.6
Cre16.g650500 Chlamydomonas reinhardtii HOM05D006234 ORTHO05D007813 2.4e-28 130.2 199 39.2
ATR1091G013 Amborella trichopoda HOM05D006234 ORTHO05D007813 1.2e-27 127.9 96 67.7
SalBow1G3204 Salvia bowleyana HOM05D006234 ORTHO05D007813 5.1e-23 112.5 84 66.7
Lalb_Chr08g0236591 Lupinus albus HOM05D006234 ORTHO05D007813 1.6e-21 107.5 64 76.6
DCAR_026145 Daucus carota HOM05D007767 ORTHO05D010057 4.8e-21 105.9 109 56.9
Cre09.g387134 Chlamydomonas reinhardtii HOM05D006234 ORTHO05D007813 1.3e-18 97.8 133 38.3
arahy.Tifrunner.gnm1.ann1.AH97YV Arachis hypogaea HOM05D006234 ORTHO05D007813 1.8e-15 87.4 55 72.7
Lalb_Chr08g0236581 Lupinus albus HOM05D006234 ORTHO05D007813 3.0e-15 86.7 77 61.0
PRCOL_00003688 Prasinoderma coloniale HOM05D001043 ORTHO05D006432 6.7e-15 85.5 107 42.1
Actinidia19102 Actinidia chinensis HOM05D006234 ORTHO05D007813 1.5e-14 84.3 68 70.6
CSS0043871 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 5.5e-09 65.9 170 32.4
Manes.11G123700 Manihot esculenta HOM05D001043 ORTHO05D006432 9.3e-09 65.1 137 34.3
CSS0016711 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 1.2e-08 64.7 181 32.6
RcHm_v2.0_Chr6g0279701 Rosa chinensis HOM05D006234 ORTHO05D007813 3.5e-08 63.2 60 55.0
SalBow6G1357 Salvia bowleyana HOM05D003575 ORTHO05D003587 3.5e-08 63.2 44 70.5
SalBow3G0890 Salvia bowleyana HOM05D001251 ORTHO05D007813 5.1e-07 59.3 30 86.7
Atru.chr4.1261 Acer truncatum HOM05D001043 ORTHO05D006432 1.1e-06 58.2 158 29.7
CiPaw.02G052200 Carya illinoinensis HOM05D001043 ORTHO05D006432 1.1e-06 58.2 134 32.1
ECA240G3866 Erigeron canadensis HOM05D001043 ORTHO05D006432 1.1e-06 58.2 138 30.4
Glyma.12G051100 Glycine max HOM05D001043 ORTHO05D006432 1.1e-06 58.2 112 36.6
FAN07G1629 Fragaria x ananassa HOM05D001043 ORTHO05D006432 1.9e-06 57.4 116 33.6
Medtr4g068130 Medicago truncatula HOM05D001043 ORTHO05D006432 3.3e-06 56.6 137 32.8
HanXRQChr03g0092911 Helianthus annuus HOM05D001043 ORTHO05D006432 4.3e-06 56.2 137 31.4
PGR142G0751 Punica granatum HOM05D001043 ORTHO05D006432 5.6e-06 55.8 146 32.2
CiPaw.01G096300 Carya illinoinensis HOM05D001043 ORTHO05D006432 7.4e-06 55.5 101 35.6
TAR636G2727 Trochodendron aralioides HOM05D001043 ORTHO05D006432 9.6e-06 55.1 120 35.0


User provided reference genes

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