Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen12g011340 Solanum pennellii HOM05D005766 ORTHO05D007002 1.3e-260 902.5 449 100.0
Peaxi162Scf00023g00720 Petunia axillaris HOM05D005766 ORTHO05D007002 3.9e-209 731.5 521 76.4
GSVIVG01028775001 Vitis vinifera HOM05D005766 ORTHO05D007002 1.6e-178 629.8 479 68.5
Cc02_g02130 Coffea canephora HOM05D005766 ORTHO05D007002 4.1e-174 615.1 462 69.5
Rhsim03G0196600 Rhododendron simsii HOM05D005766 ORTHO05D007002 5.4e-174 614.8 487 66.7
ECA238G0894 Erigeron canadensis HOM05D005766 ORTHO05D000105 1.9e-171 606.3 460 68.0
TAR629G2087 Trochodendron aralioides HOM05D005766 ORTHO05D007002 4.3e-171 605.1 474 67.1
Prupe.2G304700 Prunus persica HOM05D005766 ORTHO05D007002 6.2e-170 601.3 472 66.7
Duzib205G0439 Durio zibethinus HOM05D005766 ORTHO05D007002 8.0e-170 600.9 469 67.2
Hma1.2p1_0327F.1_g126600 Hydrangea macrophylla HOM05D005766 ORTHO05D007002 1.1e-169 600.5 457 68.7
Thecc.03G188900 Theobroma cacao HOM05D005766 ORTHO05D007002 5.2e-169 598.2 473 66.6
PSO170G0163 Papaver somniferum HOM05D005766 ORTHO05D007002 5.8e-168 594.7 467 65.5
CiPaw.05G259700 Carya illinoinensis HOM05D005766 ORTHO05D007002 7.5e-168 594.3 471 67.3
Nn1g01746 Nelumbo nucifera HOM05D005766 ORTHO05D007002 1.7e-167 593.2 480 66.0
Potri.015G026100 Populus trichocarpa HOM05D005766 ORTHO05D007002 6.4e-167 591.3 472 66.9
Gohir.A12G254600 Gossypium hirsutum HOM05D005766 ORTHO05D007002 1.4e-166 590.1 466 66.3
Gorai.008G272400 Gossypium raimondii HOM05D005766 ORTHO05D007002 3.2e-166 589.0 466 66.1
Gohir.D12G254700 Gossypium hirsutum HOM05D005766 ORTHO05D007002 7.0e-166 587.8 466 66.5
RcHm_v2.0_Chr1g0379661 Rosa chinensis HOM05D005766 ORTHO05D007002 9.2e-166 587.4 473 66.6
Dinv28359 Davidia involucrata HOM05D005766 ORTHO05D007002 2.1e-165 586.3 471 66.9
CsaV3_3G021770 Cucumis sativus L. HOM05D005766 ORTHO05D007002 3.0e-164 582.4 453 67.1
Phvul.007G077400 Phaseolus vulgaris HOM05D005766 ORTHO05D007002 1.5e-163 580.1 452 66.8
PGR004G1861 Punica granatum HOM05D005766 ORTHO05D007002 9.5e-163 577.4 462 65.6
Cfa016332 Carpinus fangiana HOM05D005766 ORTHO05D007002 1.6e-162 576.6 480 65.6
Oeu003335.2 Olea europaea HOM05D005766 ORTHO05D007002 1.6e-162 576.6 454 65.9
Glyma.20G164300 Glycine max HOM05D005766 ORTHO05D007002 2.1e-162 576.2 452 67.0
HanXRQChr14g0440231 Helianthus annuus HOM05D005766 ORTHO05D007002 8.1e-162 574.3 336 81.8
MELO3C006963.2 Cucumis melo HOM05D005766 ORTHO05D007002 1.8e-161 573.2 462 64.3
Aqoxy5G04049 Aquilegia oxysepala HOM05D005766 ORTHO05D007002 4.0e-161 572.0 480 62.9
Lsat_1_v5_gn_2_61121 Lactuca sativa HOM05D005766 ORTHO05D007002 5.2e-161 571.6 382 74.1
MD01G1212200 Malus domestica HOM05D005766 ORTHO05D007002 1.2e-160 570.5 342 78.9
Medtr1g099380 Medicago truncatula HOM05D005766 ORTHO05D007002 2.0e-160 569.7 448 66.5
Lj5g0016487 Lotus japonicus HOM05D005766 ORTHO05D007002 3.4e-160 568.9 445 66.5
Migut.F00259 Erythranthe guttata HOM05D005766 ORTHO05D007002 1.3e-159 567.0 462 64.5
Sc13g0009380 Simmondsia chinensis HOM05D005766 ORTHO05D007002 1.3e-159 567.0 472 63.3
CANSAT21G0601 Cannabis sativa HOM05D005766 ORTHO05D007002 8.3e-159 564.3 469 63.8
Glyma.10G228700 Glycine max HOM05D005766 ORTHO05D007002 8.3e-159 564.3 459 65.8
Lalb_Chr06g0161411 Lupinus albus HOM05D005766 ORTHO05D007002 1.9e-158 563.1 459 64.5
Manes.14G020100 Manihot esculenta HOM05D005766 ORTHO05D007002 3.2e-158 562.4 438 67.8
TPR.G7746 Trifolium pratense HOM05D005766 ORTHO05D007002 3.5e-157 558.9 455 65.3
MD07G1282600 Malus domestica HOM05D005766 ORTHO05D007002 1.7e-156 556.6 493 60.4
HPP92_022503 Vanilla planifolia HOM05D005766 ORTHO05D007002 4.3e-155 552.0 466 62.4
EL10Ac3g05375 Beta vulgaris HOM05D005766 ORTHO05D007002 7.3e-155 551.2 448 64.1
Psat6g194920 Pisum sativum HOM05D005766 ORTHO05D007002 9.5e-155 550.8 340 76.5
ATR1131G022 Amborella trichopoda HOM05D005766 ORTHO05D007002 1.2e-154 550.4 473 61.9
Eucgr.K00307 Eucalyptus grandis HOM05D005766 ORTHO05D007002 8.1e-154 547.7 336 79.2
vmacro06594 Vaccinium macrocarpon HOM05D005766 ORTHO05D007002 4.0e-153 545.4 531 58.2
Ca_10701_v3 Cicer arietinum L. HOM05D005766 ORTHO05D007002 5.2e-153 545.0 445 64.9
Ah.07g206240 Amaranthus hybridus HOM05D005766 ORTHO05D007002 1.5e-152 543.5 463 60.9
MBI07_g26934_MAGBIO Magnolia biondii HOM05D005766 ORTHO05D007002 4.4e-152 542.0 492 60.6
QL11p056564 Quercus lobata HOM05D005766 ORTHO05D007002 3.9e-148 528.9 330 78.2
Atru.chr1.315 Acer truncatum HOM05D005766 ORTHO05D007002 5.6e-147 525.0 433 63.3
ClCG05G008560 Citrullus lanatus HOM05D005766 ORTHO05D007002 1.4e-142 510.4 458 60.7
FvH4_7g30700 Fragaria vesca HOM05D005766 ORTHO05D007002 2.4e-142 509.6 433 63.5
Sed0015140 Sechium edule HOM05D005766 ORTHO05D007002 9.3e-142 507.7 417 65.0
SalBow4G0986 Salvia bowleyana HOM05D005766 ORTHO05D007002 2.4e-137 493.0 449 61.0
CDE02G1402 Ceratophyllum demersum HOM05D001977 ORTHO05D002246 4.9e-135 485.3 287 78.7
Lj1A1010T47 Lonicera japonica HOM05D005766 ORTHO05D007002 3.2e-134 482.6 465 59.6
Haze_00083 Corylus avellana HOM05D005766 ORTHO05D007002 4.6e-133 478.8 458 58.5
Sabra15G0019200 Salix brachista HOM05D005766 ORTHO05D007002 6.0e-133 478.4 397 64.0
arahy.Tifrunner.gnm1.ann1.M1FPNI Arachis hypogaea HOM05D005766 ORTHO05D007002 3.3e-131 472.6 434 58.8
Mapoly0113s0021 Marchantia polymorpha HOM05D005766 ORTHO05D007002 5.6e-123 445.3 469 52.5
arahy.Tifrunner.gnm1.ann1.8957SA Arachis hypogaea HOM05D005766 ORTHO05D007002 9.0e-121 438.0 471 54.4
Nitab4.5_0014657g0010 Nicotiana tabacum HOM05D005766 ORTHO05D007002 3.7e-114 416.0 258 81.8
Hund04814 Selenicereus undatus HOM05D005766 ORTHO05D007002 3.7e-114 416.0 468 52.4
SGA_v2.0_scaffold192G40599 Striga asiatica HOM05D005766 ORTHO05D007002 1.1e-113 414.5 357 63.9
Glyma.09G181880 Glycine max HOM05D005766 ORTHO05D007002 5.3e-113 412.1 244 80.3
FAN06G2288 Fragaria x ananassa HOM05D005766 ORTHO05D007002 6.5e-111 405.2 479 51.8
AagrBONN_evm.TU.Sc2ySwM_344.4899 Anthoceros agrestis HOM05D005766 ORTHO05D007002 4.2e-110 402.5 331 58.3
FAN10G0167 Fragaria x ananassa HOM05D005766 ORTHO05D007002 2.7e-109 399.8 503 49.5
FAN10G3945 Fragaria x ananassa HOM05D005766 ORTHO05D007002 2.7e-109 399.8 503 49.5
TWI39G0494 Tripterygium wilfordii HOM05D005766 ORTHO05D007002 8.2e-106 388.3 454 49.8
Nitab4.5_0000157g0190 Nicotiana tabacum HOM05D005766 ORTHO05D007002 1.1e-105 387.9 249 82.7
CSS0024367 Camellia sinensis var. sinensis HOM05D005766 ORTHO05D007002 3.1e-105 386.3 337 65.0
CSS0041625 Camellia sinensis var. sinensis HOM05D005766 ORTHO05D007002 3.1e-105 386.3 337 65.0
Cpa.g.sc3.14 Carica papaya HOM05D005766 ORTHO05D007002 2.7e-101 373.2 473 47.6
FAN03G2278 Fragaria x ananassa HOM05D005766 ORTHO05D007002 6.5e-95 352.1 490 47.3
unitig_37.g11976 Utricularia gibba HOM05D005766 ORTHO05D007002 5.5e-86 322.4 252 61.1
Ciclev10004767m.g Citrus clementina HOM05D005766 ORTHO05D007002 4.8e-82 309.3 299 58.5
SMO203G0206 Selaginella moellendorffii HOM05D005766 ORTHO05D007002 3.5e-80 303.1 441 42.0
TWI39G0059 Tripterygium wilfordii HOM05D005766 ORTHO05D007002 8.3e-74 282.0 168 76.8
QL09p011984 Quercus lobata HOM05D005766 ORTHO05D007002 2.7e-72 276.9 198 71.7
CBR_g23333 Chara braunii HOM05D005766 ORTHO05D007002 3.5e-72 276.6 243 56.4
Actinidia08607 Actinidia chinensis HOM05D005766 ORTHO05D007002 1.6e-69 267.7 152 84.2
Sabra15G0021700 Salix brachista HOM05D005766 ORTHO05D007002 3.0e-68 263.5 258 58.1
FAN06G1885 Fragaria x ananassa HOM05D005766 ORTHO05D007002 1.8e-65 254.2 277 55.2
FAN01G0765 Fragaria x ananassa HOM05D005766 ORTHO05D007002 7.8e-64 248.8 277 54.9
SEGI_39054 Sequoiadendron giganteum HOM05D005766 ORTHO05D007002 2.9e-63 246.9 248 55.6
Glyma.12G172150 Glycine max HOM05D005766 ORTHO05D007002 8.6e-55 218.8 131 79.4
Glyma.03G072901 Glycine max HOM05D005766 ORTHO05D007002 1.0e-47 195.3 115 79.1
Glyma.16G148650 Glycine max HOM05D005766 ORTHO05D007002 1.5e-46 191.4 102 83.3
Glyma.10G228301 Glycine max HOM05D005766 ORTHO05D007002 1.2e-45 188.3 100 84.0
PRCOL_00006853 Prasinoderma coloniale HOM05D005766 ORTHO05D007002 2.9e-42 177.2 358 34.9
Nitab4.5_0000327g0060 Nicotiana tabacum HOM05D005766 ORTHO05D007002 1.2e-40 171.8 88 92.0
QL09p011981 Quercus lobata HOM05D005766 ORTHO05D007002 2.1e-37 161.0 104 73.1
DCAR_008901 Daucus carota HOM05D000149 ORTHO05D000076 1.6e-29 134.8 303 33.3
CSS0010184 Camellia sinensis var. sinensis HOM05D005766 ORTHO05D007002 3.4e-27 127.1 78 78.2
Actinidia08608 Actinidia chinensis HOM05D005766 ORTHO05D007002 7.9e-24 115.9 68 79.4
CSS0002634 Camellia sinensis var. sinensis HOM05D005766 ORTHO05D007002 7.9e-24 115.9 68 82.4
Cfa000854 Carpinus fangiana HOM05D005766 ORTHO05D007002 9.6e-22 109.0 71 74.6
COL.COLO4_30253 Corchorus olitorius HOM05D005766 ORTHO05D007002 2.9e-18 97.4 186 38.7
Cre01.g002700 Chlamydomonas reinhardtii HOM05D005766 ORTHO05D007002 2.3e-15 87.8 258 25.2
Peaxi162Scf00603g00414 Petunia axillaris HOM05D007579 ORTHO05D000285 1.9e-14 84.7 60 70.0
ECA233G2827 Erigeron canadensis HOM05D000836 ORTHO05D000709 7.1e-09 66.2 225 25.8
MSTRG.25865 Avicennia marina HOM05D000836 ORTHO05D000709 2.7e-08 64.3 245 23.3
GSVIVG01035793001 Vitis vinifera HOM05D000836 ORTHO05D000709 4.6e-08 63.5 235 23.4
Cc11_g01310 Coffea canephora HOM05D000836 ORTHO05D000709 6.0e-08 63.2 181 26.0
arahy.Tifrunner.gnm1.ann1.I2WYER Arachis hypogaea HOM05D000836 ORTHO05D000709 1.0e-07 62.4 215 25.1
Hma1.2p1_0175F.1_g077110 Hydrangea macrophylla HOM05D000836 ORTHO05D000709 1.0e-07 62.4 201 25.4
SHI18603 Sapria himalayana HOM05D000836 ORTHO05D000709 1.0e-07 62.4 172 27.9
RcHm_v2.0_Chr7g0190461 Rosa chinensis HOM05D002332 ORTHO05D002509 1.8e-07 61.6 251 24.7
FAN08G0156 Fragaria x ananassa HOM05D002332 ORTHO05D002509 2.3e-07 61.2 251 25.1
FAN24G1350 Fragaria x ananassa HOM05D000836 ORTHO05D000709 2.3e-07 61.2 207 23.7
HanXRQChr13g0402111 Helianthus annuus HOM05D000836 ORTHO05D000709 2.3e-07 61.2 222 23.9
Phvul.001G166600 Phaseolus vulgaris HOM05D006183 ORTHO05D007844 2.3e-07 61.2 242 24.8
VMungo1383G1346 Vigna mungo HOM05D006183 ORTHO05D007844 2.3e-07 61.2 242 24.8
GSVIVG01035791001 Vitis vinifera HOM05D000836 ORTHO05D000709 2.3e-07 61.2 235 23.0
Migut.A00286 Erythranthe guttata HOM05D000836 ORTHO05D000709 3.0e-07 60.8 223 24.2
Solyc12g009030.2 Solanum lycopersicum HOM05D005151 ORTHO05D006322 3.0e-07 60.8 230 23.5
arahy.Tifrunner.gnm1.ann1.D7T295 Arachis hypogaea HOM05D000836 ORTHO05D000709 3.9e-07 60.5 201 25.4
ATR0751G065 Amborella trichopoda HOM05D006183 ORTHO05D007844 5.1e-07 60.1 263 23.6
ECA246G4130 Erigeron canadensis HOM05D000836 ORTHO05D000709 5.1e-07 60.1 228 24.1
Lj7C714G8 Lonicera japonica HOM05D000836 ORTHO05D000709 5.1e-07 60.1 199 25.6
Psat6g188560 Pisum sativum HOM05D000168 ORTHO05D004803 5.1e-07 60.1 324 23.1
Prupe.1G468400 Prunus persica HOM05D000836 ORTHO05D000709 5.1e-07 60.1 241 22.4
Solyc06g065640.3 Solanum lycopersicum HOM05D000836 ORTHO05D000709 5.1e-07 60.1 230 23.9
Sopen06g024040 Solanum pennellii HOM05D000836 ORTHO05D000709 5.1e-07 60.1 230 23.9
arahy.Tifrunner.gnm1.ann1.DC2VU6 Arachis hypogaea HOM05D000702 ORTHO05D007002 6.7e-07 59.7 135 34.1
Cc11_g01330 Coffea canephora HOM05D000836 ORTHO05D000709 6.7e-07 59.7 181 26.5
Nitab4.5_0002890g0020 Nicotiana tabacum HOM05D003913 ORTHO05D004803 6.7e-07 59.7 235 21.3
Sc08g0007060 Simmondsia chinensis HOM05D000836 ORTHO05D000709 6.7e-07 59.7 181 23.2
Dinv30200 Davidia involucrata HOM05D000836 ORTHO05D000709 8.7e-07 59.3 223 22.9
FvH4_5g07940 Fragaria vesca HOM05D002332 ORTHO05D002509 8.7e-07 59.3 252 24.6
FAN18G1292 Fragaria x ananassa HOM05D002332 ORTHO05D002509 8.7e-07 59.3 252 24.6
arahy.Tifrunner.gnm1.ann1.73B1UV Arachis hypogaea HOM05D006183 ORTHO05D007844 1.1e-06 58.9 247 22.7
arahy.Tifrunner.gnm1.ann1.P69TYL Arachis hypogaea HOM05D006183 ORTHO05D007844 1.1e-06 58.9 247 22.7
Lsat_1_v5_gn_6_22840 Lactuca sativa HOM05D000836 ORTHO05D000709 1.1e-06 58.9 225 23.1
Lalb_Chr11g0063901 Lupinus albus HOM05D000836 ORTHO05D000709 1.1e-06 58.9 223 24.2
Dinv11591 Davidia involucrata HOM05D000836 ORTHO05D000709 1.9e-06 58.2 223 22.4
Gohir.D13G210800 Gossypium hirsutum HOM05D000836 ORTHO05D000709 1.9e-06 58.2 233 23.6
Nitab4.5_0006206g0010 Nicotiana tabacum HOM05D000836 ORTHO05D000709 1.9e-06 58.2 172 27.3
COL.COLO4_24036 Corchorus olitorius HOM05D000836 ORTHO05D000709 2.5e-06 57.8 179 26.8
Glyma.08G252500 Glycine max HOM05D002332 ORTHO05D002509 2.5e-06 57.8 259 20.5
PGR083G1558 Punica granatum HOM05D000836 ORTHO05D000709 2.5e-06 57.8 172 26.7
SalBow2G0244 Salvia bowleyana HOM05D004669 ORTHO05D005767 2.5e-06 57.8 221 22.6
SalBow4G1671 Salvia bowleyana HOM05D006183 ORTHO05D007844 2.5e-06 57.8 256 24.6
SalBow4G2250 Salvia bowleyana HOM05D000836 ORTHO05D000709 2.5e-06 57.8 245 23.3
Sed0005148 Sechium edule HOM05D000836 ORTHO05D000709 2.5e-06 57.8 181 26.0
HPP92_004726 Vanilla planifolia HOM05D000002 ORTHO05D006339 2.5e-06 57.8 163 22.1
Zm00001eb222270 Zea mays HOM05D006183 ORTHO05D007844 2.5e-06 57.8 259 24.3
arahy.Tifrunner.gnm1.ann1.3HS4ZY Arachis hypogaea HOM05D005766 ORTHO05D007002 3.3e-06 57.4 40 67.5
Thhalv10001927m.g Eutrema salsugineum HOM05D006183 ORTHO05D007844 3.3e-06 57.4 286 22.4
FAN20G0971 Fragaria x ananassa HOM05D000836 ORTHO05D000709 3.3e-06 57.4 203 23.6
Lsat_1_v5_gn_5_32800 Lactuca sativa HOM05D000836 ORTHO05D000709 3.3e-06 57.4 223 23.3
Peaxi162Scf00545g00213 Petunia axillaris HOM05D000836 ORTHO05D000709 3.3e-06 57.4 172 27.3
PGR044G0509 Punica granatum HOM05D000836 ORTHO05D000709 3.3e-06 57.4 233 24.5
TPR.G22366 Trifolium pratense HOM05D002332 ORTHO05D002509 3.3e-06 57.4 169 23.7
Atru.chr7.2343 Acer truncatum HOM05D000836 ORTHO05D000709 4.3e-06 57.0 172 26.2
arahy.Tifrunner.gnm1.ann1.DS860L Arachis hypogaea HOM05D004669 ORTHO05D005767 4.3e-06 57.0 221 22.2
arahy.Tifrunner.gnm1.ann1.L4R828 Arachis hypogaea HOM05D004669 ORTHO05D005767 4.3e-06 57.0 221 22.2
EL10Ac5g10958 Beta vulgaris HOM05D003913 ORTHO05D004803 4.3e-06 57.0 240 23.8
CDE06G0774 Ceratophyllum demersum HOM05D000836 ORTHO05D000709 4.3e-06 57.0 223 23.8
Gohir.A13G206200 Gossypium hirsutum HOM05D000836 ORTHO05D000709 4.3e-06 57.0 233 23.2
Potri.006G248100 Populus trichocarpa HOM05D000836 ORTHO05D000709 4.3e-06 57.0 230 23.0
DCAR_022868 Daucus carota HOM05D000836 ORTHO05D000709 5.7e-06 56.6 229 21.8
Actinidia29313 Actinidia chinensis HOM05D000836 ORTHO05D000709 7.4e-06 56.2 229 21.8
CSS0035002 Camellia sinensis var. sinensis HOM05D000836 ORTHO05D000709 7.4e-06 56.2 241 22.0
FAN27G3482 Fragaria x ananassa HOM05D000836 ORTHO05D000709 7.4e-06 56.2 219 22.4
Gorai.013G240700 Gossypium raimondii HOM05D000836 ORTHO05D000709 7.4e-06 56.2 233 22.7
MD15G1117100 Malus domestica HOM05D000836 ORTHO05D000709 7.4e-06 56.2 228 22.8
Sed0026236 Sechium edule HOM05D000836 ORTHO05D000709 7.4e-06 56.2 181 26.5
Duzib168G0754 Durio zibethinus HOM05D000836 ORTHO05D000709 9.6e-06 55.8 182 26.4
FvH4_2g29940 Fragaria vesca HOM05D000836 ORTHO05D000709 9.6e-06 55.8 236 21.6
Lj4g0008004 Lotus japonicus HOM05D000836 ORTHO05D000709 9.6e-06 55.8 235 22.6
Medtr1g034785 Medicago truncatula HOM05D002332 ORTHO05D002509 9.6e-06 55.8 269 20.8
TWI34G1325 Tripterygium wilfordii HOM05D000836 ORTHO05D000709 9.6e-06 55.8 225 23.1


User provided reference genes

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