Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen12g009810 Solanum pennellii HOM05D007607 ORTHO05D009603 2.0e-46 189.1 124 100.0
Solyc12g019550.2 Solanum lycopersicum HOM05D007607 ORTHO05D009603 9.4e-44 180.3 124 96.0
PGSC0003DMG400029159 Solanum tuberosum HOM05D007607 ORTHO05D009603 3.0e-34 148.7 124 86.3
Peaxi162Scf00883g00099 Petunia axillaris HOM05D007607 ORTHO05D009603 6.5e-29 131.0 119 75.6
CAN.G1237.5 Capsicum annuum HOM05D007607 ORTHO05D009603 7.5e-25 117.5 124 75.0
Nitab4.5_0008331g0020 Nicotiana tabacum HOM05D001883 ORTHO05D002184 1.0e-18 97.1 126 69.0
Nitab4.5_0000575g0080 Nicotiana tabacum HOM05D007607 ORTHO05D009603 2.0e-17 92.8 127 66.1
CiPaw.01G169900 Carya illinoinensis HOM05D007607 ORTHO05D009603 3.1e-15 85.5 126 54.8
CANSAT56G1551 Cannabis sativa HOM05D007607 ORTHO05D009603 7.7e-14 80.9 116 51.7
Dinv18311 Davidia involucrata HOM05D007607 ORTHO05D009603 1.0e-13 80.5 129 55.0
FvH4_1g00500 Fragaria vesca HOM05D007607 ORTHO05D009603 1.7e-13 79.7 117 57.3
Haze_01353 Corylus avellana HOM05D007607 ORTHO05D009603 2.9e-13 79.0 126 53.2
Ciclev10022842m.g Citrus clementina HOM05D007607 ORTHO05D009603 3.8e-13 78.6 132 50.8
Duzib212G0637 Durio zibethinus HOM05D007607 ORTHO05D009603 3.8e-13 78.6 133 46.6
MD02G1004100 Malus domestica HOM05D007607 ORTHO05D009603 3.8e-13 78.6 124 58.1
QL10p057428 Quercus lobata HOM05D007607 ORTHO05D009603 3.8e-13 78.6 130 52.3
RcHm_v2.0_Chr2g0085131 Rosa chinensis HOM05D007607 ORTHO05D009603 5.0e-13 78.2 125 56.0
Cc03_g14540 Coffea canephora HOM05D007607 ORTHO05D009603 1.1e-12 77.0 128 49.2
Cfa015274 Carpinus fangiana HOM05D007607 ORTHO05D009603 1.9e-12 76.3 127 44.1
Gohir.D10G121500 Gossypium hirsutum HOM05D007607 ORTHO05D009603 4.2e-12 75.1 134 50.7
Gorai.011G133600 Gossypium raimondii HOM05D007607 ORTHO05D009603 4.2e-12 75.1 134 50.7
RhsimUnG0015300 Rhododendron simsii HOM05D007607 ORTHO05D009603 5.5e-12 74.7 83 69.9
QL10p057723 Quercus lobata HOM05D007607 ORTHO05D009603 9.4e-12 73.9 130 52.3
Rhsim02G0085800 Rhododendron simsii HOM05D007607 ORTHO05D009603 9.4e-12 73.9 129 54.3
Thecc.04G162800 Theobroma cacao HOM05D007607 ORTHO05D009603 1.2e-11 73.6 128 50.0
MD15G1147800 Malus domestica HOM05D007607 ORTHO05D009603 2.1e-11 72.8 87 67.8
Migut.N03053 Erythranthe guttata HOM05D007607 ORTHO05D009603 2.7e-11 72.4 114 50.9
Manes.05G131900 Manihot esculenta HOM05D007607 ORTHO05D009603 4.7e-11 71.6 127 50.4
CiPaw.02G100000 Carya illinoinensis HOM05D007607 ORTHO05D009603 8.0e-11 70.9 125 48.0
Gohir.A10G145500 Gossypium hirsutum HOM05D007607 ORTHO05D009603 8.0e-11 70.9 136 48.5
Potri.013G128700 Populus trichocarpa HOM05D007607 ORTHO05D009603 8.0e-11 70.9 131 51.9
Actinidia28975 Actinidia chinensis HOM05D007607 ORTHO05D009603 1.4e-10 70.1 123 43.9
GSVIVG01038189001 Vitis vinifera HOM05D007607 ORTHO05D009603 3.0e-10 68.9 121 49.6
MSTRG.22043 Avicennia marina HOM05D007607 ORTHO05D009603 6.8e-10 67.8 87 52.9
ECA233G0487 Erigeron canadensis HOM05D007607 ORTHO05D009603 6.8e-10 67.8 122 41.8
Lsat_1_v5_gn_8_9141 Lactuca sativa HOM05D007607 ORTHO05D009603 6.8e-10 67.8 122 45.9
Atru.chr4.1481 Acer truncatum HOM05D007607 ORTHO05D009603 8.8e-10 67.4 84 58.3
Atru.chr4.1510 Acer truncatum HOM05D007607 ORTHO05D009603 8.8e-10 67.4 84 58.3
CSS0042213 Camellia sinensis var. sinensis HOM05D007607 ORTHO05D009603 8.8e-10 67.4 80 63.8
AUR62002416 Chenopodium quinoa HOM05D007607 ORTHO05D009603 8.8e-10 67.4 75 52.0
Eucgr.H00285 Eucalyptus grandis HOM05D007607 ORTHO05D009603 8.8e-10 67.4 116 55.2
Prupe.7G267000 Prunus persica HOM05D007607 ORTHO05D009603 1.2e-09 67.0 84 63.1
MSTRG.24562 Avicennia marina HOM05D007607 ORTHO05D009603 1.5e-09 66.6 116 53.4
SalBow6G6796 Salvia bowleyana HOM05D007607 ORTHO05D009603 1.5e-09 66.6 118 46.6
MELO3C011848.2 Cucumis melo HOM05D007607 ORTHO05D009603 2.0e-09 66.2 134 44.0
PSO017G0391 Papaver somniferum HOM05D007607 ORTHO05D009603 2.0e-09 66.2 127 37.8
TAR362G0213 Trochodendron aralioides HOM05D007607 ORTHO05D009603 2.0e-09 66.2 132 48.5
Glyma.07G206400 Glycine max HOM05D007607 ORTHO05D009603 2.6e-09 65.9 43 83.7
CSS0037895 Camellia sinensis var. sinensis HOM05D007607 ORTHO05D009603 4.4e-09 65.1 80 62.5
HanXRQChr02g0059081 Helianthus annuus HOM05D007607 ORTHO05D009603 4.4e-09 65.1 120 50.8
PSO675G5570 Papaver somniferum HOM05D007607 ORTHO05D009603 5.7e-09 64.7 129 37.2
Aqoxy2G03795 Aquilegia oxysepala HOM05D007607 ORTHO05D009603 7.5e-09 64.3 109 56.9
Carub.0001s2092 Capsella rubella HOM05D007607 ORTHO05D009603 7.5e-09 64.3 80 65.0
CsaV3_5G030090 Cucumis sativus L. HOM05D007607 ORTHO05D009603 7.5e-09 64.3 134 46.3
Hund12359 Selenicereus undatus HOM05D007607 ORTHO05D009603 7.5e-09 64.3 75 56.0
Lj4g0023803 Lotus japonicus HOM05D007607 ORTHO05D009603 9.8e-09 63.9 131 46.6
ClCG11G013470 Citrullus lanatus HOM05D007607 ORTHO05D009603 1.3e-08 63.5 135 45.2
Sed0020904 Sechium edule HOM05D007607 ORTHO05D009603 1.3e-08 63.5 131 38.2
arahy.Tifrunner.gnm1.ann1.RJI6AK Arachis hypogaea HOM05D007607 ORTHO05D009603 1.7e-08 63.2 42 76.2
BcaC06g34863 Brassica carinata HOM05D007607 ORTHO05D009603 1.7e-08 63.2 84 60.7
BolC7t42778H Brassica oleracea HOM05D007607 ORTHO05D009603 1.7e-08 63.2 84 60.7
Zm00001eb318610 Zea mays HOM05D007607 ORTHO05D009603 1.7e-08 63.2 37 86.5
Aa31LG7G5390 Aethionema arabicum HOM05D007607 ORTHO05D009603 2.8e-08 62.4 39 87.2
PGR142G0203 Punica granatum HOM05D007607 ORTHO05D009603 2.8e-08 62.4 131 51.1
Lalb_Chr16g0384371 Lupinus albus HOM05D007607 ORTHO05D009603 4.9e-08 61.6 139 43.2
Sc13g0006620 Simmondsia chinensis HOM05D007607 ORTHO05D009603 4.9e-08 61.6 106 39.6
TWI15G0968 Tripterygium wilfordii HOM05D007607 ORTHO05D009603 4.9e-08 61.6 76 63.2
BraA06t24849Z Brassica rapa HOM05D007607 ORTHO05D009603 6.3e-08 61.2 79 62.0
Os09g0517000 Oryza sativa ssp. japonica HOM05D007607 ORTHO05D009603 6.3e-08 61.2 40 77.5
BcaB07g32146 Brassica carinata HOM05D007607 ORTHO05D009603 8.3e-08 60.8 79 60.8
A06p17530 Brassica napus HOM05D007607 ORTHO05D009603 8.3e-08 60.8 79 62.0
C05p20400 Brassica napus HOM05D007607 ORTHO05D009603 8.3e-08 60.8 79 62.0
Cpa.g.sc343.4 Carica papaya HOM05D007607 ORTHO05D009603 8.3e-08 60.8 127 47.2
AUR62023773 Chenopodium quinoa HOM05D007607 ORTHO05D009603 8.3e-08 60.8 75 58.7
THA.LOC104813690 Tarenaya hassleriana HOM05D007607 ORTHO05D009603 8.3e-08 60.8 77 59.7
BcaB03g14267 Brassica carinata HOM05D007607 ORTHO05D009603 1.4e-07 60.1 84 59.5
A07p15130 Brassica napus HOM05D007607 ORTHO05D009603 1.4e-07 60.1 45 77.8
C07p22190 Brassica napus HOM05D007607 ORTHO05D009603 2.4e-07 59.3 84 59.5
Ca_18631_v3 Cicer arietinum L. HOM05D004461 ORTHO05D005543 2.4e-07 59.3 137 40.1
Sp1g19030 Schrenkiella parvula HOM05D007607 ORTHO05D009603 4.1e-07 58.5 36 86.1
AL1G34640 Arabidopsis lyrata HOM05D007607 ORTHO05D009603 5.4e-07 58.2 79 62.0
Thhalv10009074m.g Eutrema salsugineum HOM05D007607 ORTHO05D009603 5.4e-07 58.2 79 59.5
Nn7g37525 Nelumbo nucifera HOM05D007607 ORTHO05D009603 5.4e-07 58.2 44 75.0
VMungo0251G2348 Vigna mungo HOM05D007607 ORTHO05D009603 7.0e-07 57.8 43 72.1
MBI10_g16327_MAGBIO Magnolia biondii HOM05D007607 ORTHO05D009603 9.2e-07 57.4 130 46.2
AT1G21500 Arabidopsis thaliana HOM05D007607 ORTHO05D009603 1.2e-06 57.0 79 62.0
EL10Ac3g06110 Beta vulgaris HOM05D007607 ORTHO05D009603 1.2e-06 57.0 131 38.2
Ah.13g073390 Amaranthus hybridus HOM05D007607 ORTHO05D009603 1.6e-06 56.6 43 69.8
BcaC05g26059 Brassica carinata HOM05D007607 ORTHO05D009603 1.6e-06 56.6 79 58.2
BolC5t30734H Brassica oleracea HOM05D007607 ORTHO05D009603 1.6e-06 56.6 79 58.2
Glyma.02G138600 Glycine max HOM05D007607 ORTHO05D009603 2.0e-06 56.2 148 44.6
Psat7g119360 Pisum sativum HOM05D007607 ORTHO05D009603 3.5e-06 55.5 44 70.5
DCAR_005451 Daucus carota HOM05D007607 ORTHO05D009603 5.9e-06 54.7 103 45.6
unitig_22.g5705 Utricularia gibba HOM05D007607 ORTHO05D009603 5.9e-06 54.7 113 42.5
TPR.G23536 Trifolium pratense HOM05D007607 ORTHO05D009603 7.7e-06 54.3 35 77.1


User provided reference genes

Program Settings