Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen12g008740 Solanum pennellii HOM05D015401 ORTHO05D000921 9.7e-112 406.8 196 100.0
PGSC0003DMG400043600 Solanum tuberosum HOM05D015401 ORTHO05D020302 4.0e-41 172.2 169 52.1
CAN.G1393.21 Capsicum annuum HOM05D015401 ORTHO05D020302 1.9e-27 126.7 110 53.6
CANSAT64G2197 Cannabis sativa HOM05D003171 ORTHO05D000921 5.0e-15 85.5 150 37.3
CANSAT11G0381 Cannabis sativa HOM05D003171 ORTHO05D000921 9.4e-14 81.3 157 35.7
CiPaw.01G106700 Carya illinoinensis HOM05D003171 ORTHO05D000921 1.6e-13 80.5 167 32.9
Atru.chr5.3274 Acer truncatum HOM05D003171 ORTHO05D000921 3.0e-12 76.3 147 29.3
RcHm_v2.0_Chr1g0354771 Rosa chinensis HOM05D003171 ORTHO05D000921 5.1e-12 75.5 151 28.5
Nn3g16139 Nelumbo nucifera HOM05D000665 ORTHO05D000285 2.0e-11 73.6 150 28.7
Nn3g20404 Nelumbo nucifera HOM05D000665 ORTHO05D000285 2.0e-11 73.6 150 28.7
Peaxi162Scf00519g00615 Petunia axillaris HOM05D015401 ORTHO05D020302 3.3e-11 72.8 142 28.9
CSS0048883 Camellia sinensis var. sinensis HOM05D003171 ORTHO05D000921 9.7e-11 71.2 159 30.2
Ciclev10006620m.g Citrus clementina HOM05D003171 ORTHO05D000921 9.7e-11 71.2 150 28.7
vmacro16933 Vaccinium macrocarpon HOM05D003171 ORTHO05D000037 9.7e-11 71.2 156 29.5
Lj7A726T26 Lonicera japonica HOM05D008338 ORTHO05D000921 2.2e-10 70.1 132 33.3
Ciclev10028952m.g Citrus clementina HOM05D003171 ORTHO05D000921 2.8e-10 69.7 151 28.5
FvH4_7g00340 Fragaria vesca HOM05D003171 ORTHO05D000921 2.8e-10 69.7 134 29.9
TWI38G0708 Tripterygium wilfordii HOM05D000876 ORTHO05D000285 3.7e-10 69.3 133 31.6
PGR142G0886 Punica granatum HOM05D003171 ORTHO05D000921 6.3e-10 68.6 165 29.1
TWI34G1784 Tripterygium wilfordii HOM05D000876 ORTHO05D000285 6.3e-10 68.6 132 30.3
TWI38G1661 Tripterygium wilfordii HOM05D000876 ORTHO05D000285 6.3e-10 68.6 132 30.3
Ciclev10018241m.g Citrus clementina HOM05D003171 ORTHO05D000921 8.2e-10 68.2 150 28.7
Nn1g02527 Nelumbo nucifera HOM05D000665 ORTHO05D000921 8.2e-10 68.2 129 28.7
Rhsim07G0109100 Rhododendron simsii HOM05D021294 ORTHO05D000921 8.2e-10 68.2 139 31.7
TWI38G1581 Tripterygium wilfordii HOM05D000876 ORTHO05D000285 1.4e-09 67.4 176 24.4
TWI75G1494 Tripterygium wilfordii HOM05D000876 ORTHO05D000285 1.4e-09 67.4 149 27.5
CSS0041232 Camellia sinensis var. sinensis HOM05D003171 ORTHO05D000921 1.8e-09 67.0 137 32.1
Lj3A995G65 Lonicera japonica HOM05D008338 ORTHO05D000921 1.8e-09 67.0 149 30.2
Lj6g0024631 Lotus japonicus HOM05D003171 ORTHO05D000921 1.8e-09 67.0 160 31.2
PGR119G2496 Punica granatum HOM05D003171 ORTHO05D000921 1.8e-09 67.0 165 29.1
PSO700G0266 Papaver somniferum HOM05D003171 ORTHO05D000921 2.4e-09 66.6 149 29.5
Rhsim09G0057100 Rhododendron simsii HOM05D021294 ORTHO05D000921 2.4e-09 66.6 155 31.0
CARHR004570 Cardamine hirsuta HOM05D001678 ORTHO05D001698 3.1e-09 66.2 147 28.6
TWI23G0996 Tripterygium wilfordii HOM05D000876 ORTHO05D000285 4.1e-09 65.9 149 26.8
TWI34G1578 Tripterygium wilfordii HOM05D000876 ORTHO05D000285 4.1e-09 65.9 149 26.8
Eucgr.H04051 Eucalyptus grandis HOM05D000665 ORTHO05D000285 5.3e-09 65.5 139 25.9
Lj5g0008420 Lotus japonicus HOM05D003171 ORTHO05D000921 5.3e-09 65.5 160 30.6
Dinv39109 Davidia involucrata HOM05D000665 ORTHO05D000921 9.1e-09 64.7 141 27.7
Lj4A464T6 Lonicera japonica HOM05D008338 ORTHO05D000921 1.2e-08 64.3 149 31.5
Lju1319C4G9 Lonicera japonica HOM05D008338 ORTHO05D000921 1.2e-08 64.3 132 31.1
TWI31G1090 Tripterygium wilfordii HOM05D000876 ORTHO05D000285 1.2e-08 64.3 175 25.1
Aqoxy5G02246 Aquilegia oxysepala HOM05D000034 ORTHO05D000037 1.5e-08 63.9 161 29.2
Medtr1g073440 Medicago truncatula HOM05D009922 ORTHO05D000285 1.5e-08 63.9 173 26.0
Phvul.002G065100 Phaseolus vulgaris HOM05D005504 ORTHO05D002688 1.5e-08 63.9 152 27.0
Prupe.6G193000 Prunus persica HOM05D003171 ORTHO05D000921 1.5e-08 63.9 83 41.0
PSO724G0339 Papaver somniferum HOM05D003171 ORTHO05D000921 2.0e-08 63.5 149 28.9
Phvul.002G169500 Phaseolus vulgaris HOM05D005504 ORTHO05D000585 2.0e-08 63.5 157 26.8
Phvul.006G022100 Phaseolus vulgaris HOM05D005504 ORTHO05D002688 2.0e-08 63.5 157 28.0
CiPaw.08G101500 Carya illinoinensis HOM05D003171 ORTHO05D000921 2.6e-08 63.2 153 30.1
CiPaw.15G091800 Carya illinoinensis HOM05D003171 ORTHO05D000921 2.6e-08 63.2 153 30.1
Lj1A366G18 Lonicera japonica HOM05D008338 ORTHO05D000921 2.6e-08 63.2 132 31.1
Phvul.008G129400 Phaseolus vulgaris HOM05D005504 ORTHO05D002688 2.6e-08 63.2 157 27.4
Phvul.010G083800 Phaseolus vulgaris HOM05D005504 ORTHO05D002688 2.6e-08 63.2 154 26.6
TWI12G1481 Tripterygium wilfordii HOM05D000876 ORTHO05D000285 2.6e-08 63.2 132 29.5
CiPaw.06G117600 Carya illinoinensis HOM05D003171 ORTHO05D000921 3.4e-08 62.8 162 27.8
Ciclev10028960m.g Citrus clementina HOM05D003171 ORTHO05D000921 3.4e-08 62.8 157 29.3
MELO3C030897.2 Cucumis melo HOM05D007209 ORTHO05D000921 3.4e-08 62.8 140 25.7
Dinv02799 Davidia involucrata HOM05D000665 ORTHO05D000921 3.4e-08 62.8 141 27.0
Dinv33374 Davidia involucrata HOM05D008473 ORTHO05D000921 3.4e-08 62.8 160 26.9
ClCG10G015090 Citrullus lanatus HOM05D007209 ORTHO05D000921 4.5e-08 62.4 140 26.4
Phvul.011G148300 Phaseolus vulgaris HOM05D005504 ORTHO05D002688 5.9e-08 62.0 155 27.1
BolC6t36822H Brassica oleracea HOM05D001678 ORTHO05D001698 7.7e-08 61.6 156 28.2
Dinv43770 Davidia involucrata HOM05D000665 ORTHO05D000921 7.7e-08 61.6 141 27.0
MBI04_g27247_MAGBIO Magnolia biondii HOM05D000665 ORTHO05D000285 1.0e-07 61.2 134 28.4
Medtr8g468830 Medicago truncatula HOM05D009922 ORTHO05D000285 1.0e-07 61.2 128 27.3
Phvul.010G071400 Phaseolus vulgaris HOM05D005504 ORTHO05D002688 1.0e-07 61.2 157 26.8
Carub.0002s1509 Capsella rubella HOM05D001678 ORTHO05D001698 1.3e-07 60.8 176 26.7
Carub.0007s2622 Capsella rubella HOM05D001678 ORTHO05D001698 1.3e-07 60.8 176 26.7
PGR042G0711 Punica granatum HOM05D003171 ORTHO05D000921 1.3e-07 60.8 159 30.8
MELO3C034280.2 Cucumis melo HOM05D007209 ORTHO05D000921 2.2e-07 60.1 133 26.3
QL09p025174 Quercus lobata HOM05D003171 ORTHO05D000921 2.2e-07 60.1 161 26.7
FvH4_1g10461 Fragaria vesca HOM05D000034 ORTHO05D000037 2.9e-07 59.7 162 27.8
Hma1.2p1_0187F.1_g082350 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 2.9e-07 59.7 135 27.4
Phvul.009G219600 Phaseolus vulgaris HOM05D005504 ORTHO05D002688 2.9e-07 59.7 173 25.4
Rhsim02G0181300 Rhododendron simsii HOM05D003171 ORTHO05D000921 2.9e-07 59.7 99 35.4
TWI39G0385 Tripterygium wilfordii HOM05D000876 ORTHO05D000285 2.9e-07 59.7 134 27.6
Ciclev10024555m.g Citrus clementina HOM05D003171 ORTHO05D000921 3.8e-07 59.3 98 36.7
Lj1g0004986 Lotus japonicus HOM05D000034 ORTHO05D002688 3.8e-07 59.3 154 27.3
Lj1g0008887 Lotus japonicus HOM05D000034 ORTHO05D002688 3.8e-07 59.3 154 27.3
Phvul.001G100600 Phaseolus vulgaris HOM05D005504 ORTHO05D000585 3.8e-07 59.3 90 33.3
Phvul.003G110700 Phaseolus vulgaris HOM05D005504 ORTHO05D002688 3.8e-07 59.3 157 26.1
QL02p070399 Quercus lobata HOM05D003171 ORTHO05D000921 3.8e-07 59.3 151 27.2
QL05p040133 Quercus lobata HOM05D003171 ORTHO05D000921 3.8e-07 59.3 151 27.2
QL05p062248 Quercus lobata HOM05D003171 ORTHO05D000921 3.8e-07 59.3 151 27.2
QL09p032434 Quercus lobata HOM05D003171 ORTHO05D000921 3.8e-07 59.3 151 27.2
QL10p053818 Quercus lobata HOM05D003171 ORTHO05D000921 3.8e-07 59.3 151 27.2
TWI56G0298 Tripterygium wilfordii HOM05D000876 ORTHO05D000285 5.0e-07 58.9 134 27.6
arahy.Tifrunner.gnm1.ann1.BVAS0V Arachis hypogaea HOM05D000034 ORTHO05D002688 6.5e-07 58.5 134 27.6
FAN09G3146 Fragaria x ananassa HOM05D000876 ORTHO05D000285 6.5e-07 58.5 180 26.1
FAN09G3305 Fragaria x ananassa HOM05D000876 ORTHO05D000285 6.5e-07 58.5 180 26.1
Lj7A99T40 Lonicera japonica HOM05D008338 ORTHO05D000921 6.5e-07 58.5 107 31.8
PGR031G3942 Punica granatum HOM05D003171 ORTHO05D000921 6.5e-07 58.5 163 26.4
PGR083G0806 Punica granatum HOM05D003171 ORTHO05D000921 6.5e-07 58.5 163 26.4
PGR142G1110 Punica granatum HOM05D003171 ORTHO05D000921 6.5e-07 58.5 163 26.4
PGR142G2502 Punica granatum HOM05D003171 ORTHO05D000921 6.5e-07 58.5 163 26.4
arahy.Tifrunner.gnm1.ann1.UA7YVD Arachis hypogaea HOM05D000034 ORTHO05D002688 8.5e-07 58.2 134 27.6
PSO170G3394 Papaver somniferum HOM05D003171 ORTHO05D000921 8.5e-07 58.2 116 32.8
TWI53G2118 Tripterygium wilfordii HOM05D000876 ORTHO05D000285 8.5e-07 58.2 133 27.8
QL06p033820 Quercus lobata HOM05D003171 ORTHO05D000921 1.1e-06 57.8 151 25.8
Rhsim07G0029700 Rhododendron simsii HOM05D020286 ORTHO05D000921 1.1e-06 57.8 144 26.4
FAN10G2856 Fragaria x ananassa HOM05D000876 ORTHO05D000285 1.4e-06 57.4 162 27.2
FAN17G2644 Fragaria x ananassa HOM05D000876 ORTHO05D000285 1.4e-06 57.4 162 27.2
Phvul.009G207400 Phaseolus vulgaris HOM05D005504 ORTHO05D000585 1.4e-06 57.4 155 28.4
FAN11G2191 Fragaria x ananassa HOM05D000876 ORTHO05D000285 1.9e-06 57.0 162 27.2
Hma1.2p1_0471F.1_g159430 Hydrangea macrophylla HOM05D003171 ORTHO05D000921 1.9e-06 57.0 120 31.7
Lj1g0022373 Lotus japonicus HOM05D000034 ORTHO05D002688 1.9e-06 57.0 153 25.5
MD15G1314200 Malus domestica HOM05D000876 ORTHO05D000285 1.9e-06 57.0 132 28.8
PGR142G1768 Punica granatum HOM05D003171 ORTHO05D000921 1.9e-06 57.0 99 35.4
PGSC0003DMG400036457 Solanum tuberosum HOM05D000665 ORTHO05D000140 1.9e-06 57.0 139 28.8
arahy.Tifrunner.gnm1.ann1.C92MA9 Arachis hypogaea HOM05D000034 ORTHO05D002688 2.5e-06 56.6 134 26.9
MELO3C032092.2 Cucumis melo HOM05D007209 ORTHO05D000921 2.5e-06 56.6 140 25.7
Lj4P771T23 Lonicera japonica HOM05D008338 ORTHO05D000921 2.5e-06 56.6 131 29.0
Phvul.011G095800 Phaseolus vulgaris HOM05D005504 ORTHO05D002688 2.5e-06 56.6 152 25.7
PGR102G1426 Punica granatum HOM05D003171 ORTHO05D000921 2.5e-06 56.6 163 25.8
QL07p023043 Quercus lobata HOM05D003171 ORTHO05D000921 2.5e-06 56.6 166 24.1
FAN10G0526 Fragaria x ananassa HOM05D001678 ORTHO05D001698 3.2e-06 56.2 151 27.2
FAN19G0003 Fragaria x ananassa HOM05D000876 ORTHO05D000285 3.2e-06 56.2 162 27.2
QL03p032583 Quercus lobata HOM05D000034 ORTHO05D000921 3.2e-06 56.2 166 24.1
QL04p024672 Quercus lobata HOM05D000034 ORTHO05D000921 3.2e-06 56.2 166 24.1
Hma1.2p1_0035F.1_g021930 Hydrangea macrophylla HOM05D000034 ORTHO05D000037 5.5e-06 55.5 138 24.6
PSO541G4041 Papaver somniferum HOM05D000665 ORTHO05D000140 5.5e-06 55.5 143 25.2
PGR042G1121 Punica granatum HOM05D003171 ORTHO05D000921 5.5e-06 55.5 163 25.8
PGR083G2390 Punica granatum HOM05D003171 ORTHO05D000921 5.5e-06 55.5 163 27.0
Rhsim13G0129300 Rhododendron simsii HOM05D000665 ORTHO05D000921 5.5e-06 55.5 113 31.9
RcHm_v2.0_Chr5g0052631 Rosa chinensis HOM05D001678 ORTHO05D001698 5.5e-06 55.5 151 26.5
Dinv44163 Davidia involucrata HOM05D007209 ORTHO05D000921 7.2e-06 55.1 89 34.8
Phvul.005G038000 Phaseolus vulgaris HOM05D005504 ORTHO05D002688 7.2e-06 55.1 93 28.0
PGR044G1317 Punica granatum HOM05D003171 ORTHO05D000921 7.2e-06 55.1 179 25.1
PGR044G2193 Punica granatum HOM05D003171 ORTHO05D000921 7.2e-06 55.1 99 34.3
PGR119G1897 Punica granatum HOM05D003171 ORTHO05D000921 7.2e-06 55.1 163 25.2
PGR142G3438 Punica granatum HOM05D003171 ORTHO05D000921 7.2e-06 55.1 163 25.2
MELO3C035039.2 Cucumis melo HOM05D007209 ORTHO05D000921 9.4e-06 54.7 140 24.3
Dinv17018 Davidia involucrata HOM05D007209 ORTHO05D000921 9.4e-06 54.7 89 32.6
Dinv42966 Davidia involucrata HOM05D007209 ORTHO05D000921 9.4e-06 54.7 89 32.6
Dinv43133 Davidia involucrata HOM05D007209 ORTHO05D000921 9.4e-06 54.7 89 32.6
PGR004G0260 Punica granatum HOM05D003171 ORTHO05D000921 9.4e-06 54.7 152 28.3
PGR102G1332 Punica granatum HOM05D003171 ORTHO05D000921 9.4e-06 54.7 162 24.7
PGR142G2636 Punica granatum HOM05D003171 ORTHO05D000921 9.4e-06 54.7 152 28.3


User provided reference genes

Program Settings