Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen12g008260 Solanum pennellii HOM05D005675 ORTHO05D006884 3.9e-117 424.9 219 100.0
Solyc12g017470.2 Solanum lycopersicum HOM05D005675 ORTHO05D006884 2.8e-107 392.1 209 97.1
Sopen07g006010 Solanum pennellii HOM05D005675 ORTHO05D006884 2.3e-101 372.5 209 91.9
Solyc07g017290.4 Solanum lycopersicum HOM05D005675 ORTHO05D006884 2.8e-99 365.5 209 90.4
CAN.G1751.7 Capsicum annuum HOM05D005675 ORTHO05D006884 2.6e-97 359.0 209 89.0
CAN.G309.91 Capsicum annuum HOM05D005675 ORTHO05D006884 1.3e-96 356.7 209 88.0
Nitab4.5_0014696g0010 Nicotiana tabacum HOM05D005675 ORTHO05D006884 2.1e-94 349.4 209 85.6
PGSC0003DMG400006457 Solanum tuberosum HOM05D005675 ORTHO05D006884 2.4e-79 299.3 165 93.3
PGSC0003DMG400009563 Solanum tuberosum HOM05D005675 ORTHO05D006884 4.6e-78 295.0 165 92.7
CAN.G1751.9 Capsicum annuum HOM05D005675 ORTHO05D006884 1.4e-74 283.5 165 88.5
CAN.G486.3 Capsicum annuum HOM05D002496 ORTHO05D002787 1.4e-74 283.5 165 88.5
CAN.G2070.2 Capsicum annuum HOM05D005675 ORTHO05D006884 1.1e-68 263.8 169 82.8
Peaxi162Scf01527g00006 Petunia axillaris HOM05D005675 ORTHO05D006884 2.1e-62 243.0 165 78.2
CSS0020115 Camellia sinensis var. sinensis HOM05D005675 ORTHO05D006884 1.5e-57 226.9 206 58.7
Dinv26452 Davidia involucrata HOM05D005675 ORTHO05D006884 2.9e-56 222.6 212 58.0
Dinv25398 Davidia involucrata HOM05D005675 ORTHO05D006884 1.6e-54 216.9 210 58.1
CSS0039496 Camellia sinensis var. sinensis HOM05D005675 ORTHO05D006884 2.1e-54 216.5 206 57.3
TWI63G1173 Tripterygium wilfordii HOM05D005675 ORTHO05D006884 2.1e-54 216.5 212 56.1
Hma1.2p1_0661F.1_g198030 Hydrangea macrophylla HOM05D005675 ORTHO05D006884 3.6e-54 215.7 214 57.0
Actinidia02470 Actinidia chinensis HOM05D005675 ORTHO05D006884 4.6e-54 215.3 203 55.7
Manes.01G177400 Manihot esculenta HOM05D005675 ORTHO05D006884 1.8e-53 213.4 208 55.3
TWI34G2031 Tripterygium wilfordii HOM05D005675 ORTHO05D006884 3.9e-53 212.2 210 56.7
Potri.006G078700 Populus trichocarpa HOM05D005675 ORTHO05D006884 6.7e-53 211.5 205 58.0
vmacro20762 Vaccinium macrocarpon HOM05D005675 ORTHO05D006884 2.5e-52 209.5 215 53.0
Cc00_g00090 Coffea canephora HOM05D005675 ORTHO05D006884 4.3e-52 208.8 214 53.7
Prupe.4G276600 Prunus persica HOM05D005675 ORTHO05D006884 1.8e-50 203.4 207 52.7
Sabra06G0059600 Salix brachista HOM05D005675 ORTHO05D006884 1.2e-49 200.7 208 54.8
QL11p008661 Quercus lobata HOM05D005675 ORTHO05D006884 2.6e-49 199.5 204 53.4
Ciclev10008766m.g Citrus clementina HOM05D005675 ORTHO05D006884 2.9e-48 196.1 211 52.1
TAR626G0076 Trochodendron aralioides HOM05D005675 ORTHO05D006884 2.9e-48 196.1 213 52.6
Cfa020754 Carpinus fangiana HOM05D005675 ORTHO05D006884 1.1e-47 194.1 215 49.8
CiPaw.16G104100 Carya illinoinensis HOM05D005675 ORTHO05D006884 1.9e-47 193.4 207 52.2
RcHm_v2.0_Chr2g0128761 Rosa chinensis HOM05D005675 ORTHO05D006884 7.2e-47 191.4 207 50.7
MD07G1305000 Malus domestica HOM05D005675 ORTHO05D006884 9.4e-47 191.0 207 50.2
PGR044G2364 Punica granatum HOM05D005675 ORTHO05D006884 4.6e-46 188.7 198 53.0
DCAR_009047 Daucus carota HOM05D005675 ORTHO05D006884 7.9e-46 188.0 208 50.0
FAN05G3686 Fragaria x ananassa HOM05D005675 ORTHO05D006884 1.4e-45 187.2 208 51.0
FAN09G4269 Fragaria x ananassa HOM05D005675 ORTHO05D006884 2.3e-45 186.4 209 50.7
Haze_19098 Corylus avellana HOM05D005675 ORTHO05D006884 3.0e-45 186.0 245 44.5
FvH4_6g26940 Fragaria vesca HOM05D005675 ORTHO05D006884 3.0e-45 186.0 209 50.7
FAN14G0585 Fragaria x ananassa HOM05D005675 ORTHO05D006884 3.0e-45 186.0 209 50.7
Duzib168G1643 Durio zibethinus HOM05D005675 ORTHO05D006884 3.3e-44 182.6 203 51.2
MSTRG.26518 Avicennia marina HOM05D005675 ORTHO05D006884 1.3e-43 180.6 210 48.6
GSVIVG01000235001 Vitis vinifera HOM05D005675 ORTHO05D006884 1.3e-43 180.6 210 46.7
PSO170G1351 Papaver somniferum HOM05D005675 ORTHO05D006884 2.2e-43 179.9 205 49.8
Oeu036952.2 Olea europaea HOM05D005675 ORTHO05D006884 2.8e-43 179.5 268 41.4
Thecc.09G196800 Theobroma cacao HOM05D005675 ORTHO05D006884 3.7e-43 179.1 204 50.5
Lj1g0011117 Lotus japonicus HOM05D005675 ORTHO05D006884 4.8e-43 178.7 213 48.4
Cpa.g.sc115.21 Carica papaya HOM05D005675 ORTHO05D006884 6.3e-43 178.3 215 47.9
Gohir.A08G016800 Gossypium hirsutum HOM05D005675 ORTHO05D006884 8.2e-43 177.9 205 52.2
Gorai.004G024100 Gossypium raimondii HOM05D005675 ORTHO05D006884 8.2e-43 177.9 205 52.7
PSO063G5127 Papaver somniferum HOM05D005675 ORTHO05D006884 8.2e-43 177.9 208 51.0
Gohir.D08G027200 Gossypium hirsutum HOM05D005675 ORTHO05D006884 1.4e-42 177.2 204 52.0
COL.COLO4_23415 Corchorus olitorius HOM05D005675 ORTHO05D006884 4.1e-42 175.6 206 48.1
Lalb_Chr14g0362531 Lupinus albus HOM05D005675 ORTHO05D006884 4.1e-42 175.6 208 48.1
Eucgr.C02170 Eucalyptus grandis HOM05D005675 ORTHO05D006884 5.3e-42 175.3 206 47.6
Ca_25634_v3 Cicer arietinum L. HOM05D005675 ORTHO05D001317 1.2e-41 174.1 212 48.1
Migut.L01917 Erythranthe guttata HOM05D005675 ORTHO05D006884 1.2e-41 174.1 217 47.5
Glyma.01G001700 Glycine max HOM05D005675 ORTHO05D006884 5.0e-40 168.7 203 46.8
ClCG05G011260 Citrullus lanatus HOM05D005675 ORTHO05D006884 1.9e-39 166.8 216 45.4
TPR.G21343 Trifolium pratense HOM05D005675 ORTHO05D006884 2.5e-39 166.4 202 45.5
arahy.Tifrunner.gnm1.ann1.RL68NL Arachis hypogaea HOM05D005675 ORTHO05D006884 4.2e-39 165.6 208 44.7
VMungo0464G1932 Vigna mungo HOM05D005675 ORTHO05D001317 5.5e-39 165.2 215 44.7
CANSAT80G1422 Cannabis sativa HOM05D005675 ORTHO05D006884 9.4e-39 164.5 206 42.7
Sed0020807 Sechium edule HOM05D005675 ORTHO05D006884 9.4e-39 164.5 213 44.6
Medtr6g093070 Medicago truncatula HOM05D005675 ORTHO05D006884 2.7e-38 162.9 202 45.5
ECA240G2624 Erigeron canadensis HOM05D005675 ORTHO05D006884 1.8e-37 160.2 207 47.3
MBI13_g31573_MAGBIO Magnolia biondii HOM05D005675 ORTHO05D006884 5.2e-37 158.7 262 40.5
SalBow5G0607 Salvia bowleyana HOM05D005675 ORTHO05D006884 5.2e-37 158.7 212 47.2
SGA_v2.0_scaffold21G09606 Striga asiatica HOM05D005675 ORTHO05D006884 9.7e-36 154.5 207 44.4
THA.LOC104815311 Tarenaya hassleriana HOM05D005675 ORTHO05D006884 1.3e-35 154.1 204 44.6
Phvul.004G178000 Phaseolus vulgaris HOM05D005675 ORTHO05D006884 3.7e-35 152.5 209 43.1
MELO3C020255.2 Cucumis melo HOM05D005675 ORTHO05D006884 6.3e-35 151.8 211 43.1
BraA03t12828Z Brassica rapa HOM05D005675 ORTHO05D006884 1.4e-34 150.6 207 43.0
Aa31LG3G3440 Aethionema arabicum HOM05D005675 ORTHO05D006884 9.1e-34 147.9 205 38.5
Carub.0003s0981 Capsella rubella HOM05D005675 ORTHO05D006884 2.6e-33 146.4 206 39.8
CsaV3_3G021160 Cucumis sativus L. HOM05D005675 ORTHO05D006884 5.9e-33 145.2 214 43.5
BcaC01g04171 Brassica carinata HOM05D005675 ORTHO05D006884 7.7e-33 144.8 207 41.5
BolC3t16698H Brassica oleracea HOM05D005675 ORTHO05D006884 7.7e-33 144.8 207 41.5
C05p57470 Brassica napus HOM05D005675 ORTHO05D006884 1.0e-32 144.4 204 41.2
BolC5t34404H Brassica oleracea HOM05D005675 ORTHO05D006884 1.0e-32 144.4 204 41.2
SGA_v2.0_scaffold339G49254 Striga asiatica HOM05D005675 ORTHO05D006884 1.7e-32 143.7 212 42.0
A03p36640 Brassica napus HOM05D005675 ORTHO05D006884 3.8e-32 142.5 207 41.1
Rhsim01G0109900 Rhododendron simsii HOM05D005675 ORTHO05D006884 5.0e-32 142.1 171 49.1
HanXRQChr03g0067281 Helianthus annuus HOM05D005675 ORTHO05D006884 6.5e-32 141.7 203 44.3
BraA05t22649Z Brassica rapa HOM05D005675 ORTHO05D006884 1.1e-31 141.0 202 41.1
Lsat_1_v5_gn_7_57460 Lactuca sativa HOM05D005675 ORTHO05D006884 1.1e-31 141.0 188 45.2
AL3G22010 Arabidopsis lyrata HOM05D005675 ORTHO05D006884 1.5e-31 140.6 204 37.7
AT3G10572 Arabidopsis thaliana HOM05D005675 ORTHO05D006884 3.2e-31 139.4 203 38.9
Thhalv10021093m.g Eutrema salsugineum HOM05D005675 ORTHO05D006884 4.2e-31 139.0 200 38.0
AL3G45830 Arabidopsis lyrata HOM05D005675 ORTHO05D006884 1.2e-30 137.5 203 36.9
HPP92_010804 Vanilla planifolia HOM05D005675 ORTHO05D006884 1.2e-30 137.5 209 37.3
AUR62015436 Chenopodium quinoa HOM05D005675 ORTHO05D006884 1.6e-30 137.1 203 39.9
A05p38580 Brassica napus HOM05D005675 ORTHO05D006884 2.7e-30 136.3 202 39.1
Sp3g08870 Schrenkiella parvula HOM05D005675 ORTHO05D006884 1.4e-29 134.0 198 39.4
Atru.chr2.1389 Acer truncatum HOM05D005675 ORTHO05D006884 3.0e-29 132.9 207 44.9
BcaC05g29447 Brassica carinata HOM05D005675 ORTHO05D006884 3.0e-29 132.9 205 39.0
Ah.06g185690 Amaranthus hybridus HOM05D005675 ORTHO05D006884 4.0e-29 132.5 204 40.2
CARHR085110 Cardamine hirsuta HOM05D005675 ORTHO05D006884 6.7e-29 131.7 200 36.5
SHI13641 Sapria himalayana HOM05D005675 ORTHO05D006884 6.7e-29 131.7 200 38.0
AUR62002223 Chenopodium quinoa HOM05D005675 ORTHO05D006884 2.6e-28 129.8 203 38.9
CAN.G1703.6 Capsicum annuum HOM05D002496 ORTHO05D002787 2.2e-27 126.7 81 85.2
Prupe.3G126100 Prunus persica HOM05D005675 ORTHO05D006884 2.4e-26 123.2 211 39.8
ATR0626G294 Amborella trichopoda HOM05D005675 ORTHO05D006884 3.1e-26 122.9 218 38.5
CDE05G2328 Ceratophyllum demersum HOM05D005675 ORTHO05D006884 3.5e-25 119.4 212 36.8
TAR383G0085 Trochodendron aralioides HOM05D005675 ORTHO05D006884 3.5e-25 119.4 207 39.6
C03p44280 Brassica napus HOM05D005675 ORTHO05D006884 3.8e-24 115.9 207 37.7
Aqoxy6G03025 Aquilegia oxysepala HOM05D005675 ORTHO05D006884 5.0e-24 115.5 160 43.8
Zm00001eb227160 Zea mays HOM05D005675 ORTHO05D006884 5.0e-24 115.5 216 36.6
Os06g0702800 Oryza sativa ssp. japonica HOM05D005675 ORTHO05D006884 5.5e-23 112.1 219 34.7
PSO170G0789 Papaver somniferum HOM05D005675 ORTHO05D006884 1.6e-22 110.5 165 46.1
PSO170G4889 Papaver somniferum HOM05D005675 ORTHO05D006884 1.6e-22 110.5 165 46.1
PSO170G5374 Papaver somniferum HOM05D005675 ORTHO05D006884 1.6e-22 110.5 165 46.1
PSO431G0001 Papaver somniferum HOM05D005675 ORTHO05D006884 1.6e-22 110.5 165 46.1
Hund11839 Selenicereus undatus HOM05D005675 ORTHO05D006884 1.4e-21 107.5 206 37.4
SEGI_03452 Sequoiadendron giganteum HOM05D005675 ORTHO05D006884 2.8e-19 99.8 207 32.9
unitig_578.g16398 Utricularia gibba HOM05D005675 ORTHO05D006884 4.8e-19 99.0 110 46.4
PSO170G3345 Papaver somniferum HOM05D005675 ORTHO05D006884 1.4e-18 97.4 155 45.2
Sc26g0001420 Simmondsia chinensis HOM05D005675 ORTHO05D006884 5.4e-18 95.5 174 40.8
FAN02G0472 Fragaria x ananassa HOM05D005675 ORTHO05D006884 1.2e-17 94.4 140 40.7
Sopen00g008260 Solanum pennellii HOM05D005675 ORTHO05D006884 7.2e-15 85.1 62 74.2
Nitab4.5_0000899g0040 Nicotiana tabacum HOM05D005675 ORTHO05D006884 4.7e-14 82.4 46 84.8
EL10Ac3g05860 Beta vulgaris HOM05D005675 ORTHO05D006884 1.8e-13 80.5 172 38.4
Gohir.D08G027550 Gossypium hirsutum HOM05D005675 ORTHO05D006884 3.0e-13 79.7 66 63.6
Glyma.07G130600 Glycine max HOM05D005675 ORTHO05D006884 6.8e-13 78.6 126 39.7
Gorai.004G024600 Gossypium raimondii HOM05D005675 ORTHO05D006884 1.2e-12 77.8 66 62.1
Ah.13g066730 Amaranthus hybridus HOM05D014553 ORTHO05D018255 2.3e-08 63.5 48 66.7
Haze_19095 Corylus avellana HOM05D005675 ORTHO05D006884 3.8e-08 62.8 51 51.0
Sabra18G0125400 Salix brachista HOM05D000311 ORTHO05D000183 7.3e-07 58.5 42 69.0
Lju432C7G1 Lonicera japonica HOM05D005675 ORTHO05D006884 9.5e-07 58.2 38 71.1
Sabra18G0129100 Salix brachista HOM05D000311 ORTHO05D000183 2.8e-06 56.6 42 66.7
unitig_578.g16399 Utricularia gibba HOM05D005675 ORTHO05D006884 2.8e-06 56.6 75 42.7
Pp3c9_5270 Physcomitrium patens HOM05D005675 ORTHO05D006884 4.7e-06 55.8 233 25.3
Nn8g41130 Nelumbo nucifera HOM05D005675 ORTHO05D006884 6.1e-06 55.5 44 54.5


User provided reference genes

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