Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen12g008240 Solanum pennellii HOM05D005675 ORTHO05D006884 1.0e-51 206.5 106 100.0
Solyc12g017470.2 Solanum lycopersicum HOM05D005675 ORTHO05D006884 3.2e-45 184.9 101 94.1
PGSC0003DMG400006457 Solanum tuberosum HOM05D005675 ORTHO05D006884 4.2e-45 184.5 101 91.1
Solyc07g017290.4 Solanum lycopersicum HOM05D005675 ORTHO05D006884 4.5e-39 164.5 101 80.2
Sopen07g006010 Solanum pennellii HOM05D005675 ORTHO05D006884 2.9e-38 161.8 99 81.8
CAN.G1751.7 Capsicum annuum HOM05D005675 ORTHO05D006884 1.6e-31 139.4 94 73.4
Nitab4.5_0000899g0040 Nicotiana tabacum HOM05D005675 ORTHO05D006884 3.5e-31 138.3 104 70.2
CAN.G1751.9 Capsicum annuum HOM05D005675 ORTHO05D006884 4.6e-31 137.9 94 72.3
Nitab4.5_0014696g0010 Nicotiana tabacum HOM05D005675 ORTHO05D006884 2.6e-26 122.1 104 65.4
ATR0626G294 Amborella trichopoda HOM05D005675 ORTHO05D006884 1.4e-24 116.3 95 60.0
MSTRG.26518 Avicennia marina HOM05D005675 ORTHO05D006884 3.5e-23 111.7 109 56.0
SalBow5G0607 Salvia bowleyana HOM05D005675 ORTHO05D006884 4.6e-23 111.3 101 56.4
Oeu036952.2 Olea europaea HOM05D005675 ORTHO05D006884 1.0e-22 110.2 108 56.5
Dinv26452 Davidia involucrata HOM05D005675 ORTHO05D006884 6.6e-22 107.5 90 58.9
PSO063G5127 Papaver somniferum HOM05D005675 ORTHO05D006884 6.6e-22 107.5 96 57.3
DCAR_009047 Daucus carota HOM05D005675 ORTHO05D006884 8.6e-22 107.1 92 57.6
Hma1.2p1_0661F.1_g198030 Hydrangea macrophylla HOM05D005675 ORTHO05D006884 1.9e-21 105.9 90 55.6
PSO170G1351 Papaver somniferum HOM05D005675 ORTHO05D006884 2.5e-21 105.5 96 55.2
Dinv25398 Davidia involucrata HOM05D005675 ORTHO05D006884 4.3e-21 104.8 90 55.6
QL11p008661 Quercus lobata HOM05D005675 ORTHO05D006884 4.3e-21 104.8 104 56.7
TAR626G0076 Trochodendron aralioides HOM05D005675 ORTHO05D006884 5.6e-21 104.4 90 52.2
CiPaw.16G104100 Carya illinoinensis HOM05D005675 ORTHO05D006884 2.8e-20 102.1 100 56.0
GSVIVG01000235001 Vitis vinifera HOM05D005675 ORTHO05D006884 4.7e-20 101.3 90 53.3
Nn8g41130 Nelumbo nucifera HOM05D005675 ORTHO05D006884 6.2e-20 100.9 90 55.6
FAN09G4269 Fragaria x ananassa HOM05D005675 ORTHO05D006884 1.1e-19 100.1 91 54.9
FAN05G3686 Fragaria x ananassa HOM05D005675 ORTHO05D006884 1.4e-19 99.8 95 52.6
FAN14G0585 Fragaria x ananassa HOM05D005675 ORTHO05D006884 1.4e-19 99.8 91 56.0
MD07G1305000 Malus domestica HOM05D005675 ORTHO05D006884 1.8e-19 99.4 104 52.9
Migut.L01917 Erythranthe guttata HOM05D005675 ORTHO05D006884 2.3e-19 99.0 94 57.4
Potri.006G078700 Populus trichocarpa HOM05D005675 ORTHO05D006884 3.1e-19 98.6 93 55.9
Cfa020754 Carpinus fangiana HOM05D005675 ORTHO05D006884 5.2e-19 97.8 94 57.4
Sabra06G0059600 Salix brachista HOM05D005675 ORTHO05D006884 5.2e-19 97.8 93 54.8
CSS0039496 Camellia sinensis var. sinensis HOM05D005675 ORTHO05D006884 8.9e-19 97.1 103 50.5
Ciclev10008766m.g Citrus clementina HOM05D005675 ORTHO05D006884 8.9e-19 97.1 90 54.4
RcHm_v2.0_Chr2g0128761 Rosa chinensis HOM05D005675 ORTHO05D006884 8.9e-19 97.1 95 53.7
Lju432C7G1 Lonicera japonica HOM05D005675 ORTHO05D006884 1.5e-18 96.3 110 50.0
HanXRQChr03g0067281 Helianthus annuus HOM05D005675 ORTHO05D006884 2.6e-18 95.5 98 48.0
Rhsim01G0109900 Rhododendron simsii HOM05D005675 ORTHO05D006884 3.4e-18 95.1 90 52.2
Actinidia02470 Actinidia chinensis HOM05D005675 ORTHO05D006884 4.4e-18 94.7 96 50.0
AUR62002223 Chenopodium quinoa HOM05D005675 ORTHO05D006884 4.4e-18 94.7 106 48.1
Cc00_g00090 Coffea canephora HOM05D005675 ORTHO05D006884 4.4e-18 94.7 106 50.0
SGA_v2.0_scaffold21G09606 Striga asiatica HOM05D005675 ORTHO05D006884 4.4e-18 94.7 100 51.0
Prupe.4G276600 Prunus persica HOM05D005675 ORTHO05D006884 5.8e-18 94.4 104 53.8
SGA_v2.0_scaffold339G49254 Striga asiatica HOM05D005675 ORTHO05D006884 7.5e-18 94.0 95 54.7
Lsat_1_v5_gn_7_57460 Lactuca sativa HOM05D005675 ORTHO05D006884 9.8e-18 93.6 96 51.0
vmacro20762 Vaccinium macrocarpon HOM05D005675 ORTHO05D006884 9.8e-18 93.6 91 53.8
CANSAT80G1422 Cannabis sativa HOM05D005675 ORTHO05D006884 1.3e-17 93.2 93 54.8
CARHR085100 Cardamine hirsuta HOM05D005675 ORTHO05D006884 1.7e-17 92.8 96 51.0
Atru.chr2.1389 Acer truncatum HOM05D005675 ORTHO05D006884 2.2e-17 92.4 101 51.5
CsaV3_3G021160 Cucumis sativus L. HOM05D005675 ORTHO05D006884 2.9e-17 92.0 90 54.4
EL10Ac3g05860 Beta vulgaris HOM05D005675 ORTHO05D006884 4.9e-17 91.3 91 51.6
TWI34G2031 Tripterygium wilfordii HOM05D005675 ORTHO05D006884 4.9e-17 91.3 101 46.5
TWI63G1173 Tripterygium wilfordii HOM05D005675 ORTHO05D006884 4.9e-17 91.3 90 51.1
ClCG05G011260 Citrullus lanatus HOM05D005675 ORTHO05D006884 6.4e-17 90.9 90 48.9
Lj1g0011117 Lotus japonicus HOM05D005675 ORTHO05D006884 6.4e-17 90.9 90 53.3
Sc26g0001420 Simmondsia chinensis HOM05D005675 ORTHO05D006884 6.4e-17 90.9 94 48.9
FAN02G0472 Fragaria x ananassa HOM05D005675 ORTHO05D006884 8.3e-17 90.5 86 52.3
PGR044G2364 Punica granatum HOM05D005675 ORTHO05D006884 8.3e-17 90.5 90 50.0
Hund11839 Selenicereus undatus HOM05D005675 ORTHO05D006884 8.3e-17 90.5 94 51.1
Ah.06g185690 Amaranthus hybridus HOM05D005675 ORTHO05D006884 1.1e-16 90.1 90 50.0
THA.LOC104815311 Tarenaya hassleriana HOM05D005675 ORTHO05D006884 1.1e-16 90.1 94 50.0
COL.COLO4_23415 Corchorus olitorius HOM05D005675 ORTHO05D006884 1.4e-16 89.7 90 52.2
CAN.G486.3 Capsicum annuum HOM05D002496 ORTHO05D002787 1.9e-16 89.4 62 72.6
BcaC01g04171 Brassica carinata HOM05D005675 ORTHO05D006884 3.2e-16 88.6 94 51.1
BolC3t16698H Brassica oleracea HOM05D005675 ORTHO05D006884 3.2e-16 88.6 94 51.1
Gohir.A08G016800 Gossypium hirsutum HOM05D005675 ORTHO05D006884 3.2e-16 88.6 92 53.3
AT3G10572 Arabidopsis thaliana HOM05D005675 ORTHO05D006884 4.1e-16 88.2 94 47.9
Duzib168G1643 Durio zibethinus HOM05D005675 ORTHO05D006884 4.1e-16 88.2 91 52.7
Cpa.g.sc115.21 Carica papaya HOM05D005675 ORTHO05D006884 7.1e-16 87.4 102 47.1
TPR.G21343 Trifolium pratense HOM05D005675 ORTHO05D006884 7.1e-16 87.4 90 47.8
BcaC05g29447 Brassica carinata HOM05D005675 ORTHO05D006884 9.2e-16 87.0 94 46.8
Ca_25634_v3 Cicer arietinum L. HOM05D005675 ORTHO05D001317 9.2e-16 87.0 99 45.5
Thhalv10021093m.g Eutrema salsugineum HOM05D005675 ORTHO05D006884 9.2e-16 87.0 93 47.3
Prupe.3G126100 Prunus persica HOM05D005675 ORTHO05D006884 9.2e-16 87.0 91 54.9
Medtr6g093070 Medicago truncatula HOM05D005675 ORTHO05D006884 1.2e-15 86.7 90 51.1
HPP92_010804 Vanilla planifolia HOM05D005675 ORTHO05D006884 1.2e-15 86.7 90 46.7
Gohir.D08G027200 Gossypium hirsutum HOM05D005675 ORTHO05D006884 1.6e-15 86.3 92 51.1
Gorai.004G024100 Gossypium raimondii HOM05D005675 ORTHO05D006884 1.6e-15 86.3 92 51.1
A03p36640 Brassica napus HOM05D005675 ORTHO05D006884 2.1e-15 85.9 94 48.9
BolC5t34404H Brassica oleracea HOM05D005675 ORTHO05D006884 3.5e-15 85.1 90 51.1
C05p57470 Brassica napus HOM05D005675 ORTHO05D006884 4.6e-15 84.7 90 50.0
unitig_578.g16399 Utricularia gibba HOM05D005675 ORTHO05D006884 4.6e-15 84.7 90 53.3
AL3G22010 Arabidopsis lyrata HOM05D005675 ORTHO05D006884 6.0e-15 84.3 90 47.8
A05p38580 Brassica napus HOM05D005675 ORTHO05D006884 6.0e-15 84.3 100 46.0
Carub.0003s0981 Capsella rubella HOM05D005675 ORTHO05D006884 6.0e-15 84.3 93 48.4
Manes.01G177400 Manihot esculenta HOM05D005675 ORTHO05D006884 6.0e-15 84.3 93 47.3
AL3G45830 Arabidopsis lyrata HOM05D005675 ORTHO05D006884 1.0e-14 83.6 93 47.3
arahy.Tifrunner.gnm1.ann1.RL68NL Arachis hypogaea HOM05D005675 ORTHO05D006884 1.0e-14 83.6 92 46.7
BraA03t12828Z Brassica rapa HOM05D005675 ORTHO05D006884 1.0e-14 83.6 94 48.9
BraA05t22649Z Brassica rapa HOM05D005675 ORTHO05D006884 1.0e-14 83.6 90 50.0
ECA240G2624 Erigeron canadensis HOM05D005675 ORTHO05D006884 1.0e-14 83.6 90 46.7
Sed0020807 Sechium edule HOM05D005675 ORTHO05D006884 1.0e-14 83.6 90 51.1
Eucgr.C02170 Eucalyptus grandis HOM05D005675 ORTHO05D006884 1.3e-14 83.2 97 44.3
Aqoxy6G03025 Aquilegia oxysepala HOM05D005675 ORTHO05D006884 1.7e-14 82.8 93 46.2
Phvul.004G178000 Phaseolus vulgaris HOM05D005675 ORTHO05D006884 1.7e-14 82.8 90 51.1
Aa31LG3G3440 Aethionema arabicum HOM05D005675 ORTHO05D006884 2.3e-14 82.4 94 47.9
Sp3g08870 Schrenkiella parvula HOM05D005675 ORTHO05D006884 6.6e-14 80.9 93 45.2
C03p44280 Brassica napus HOM05D005675 ORTHO05D006884 1.9e-13 79.3 97 46.4
VMungo0464G1932 Vigna mungo HOM05D005675 ORTHO05D001317 2.5e-13 79.0 90 50.0
CDE05G2328 Ceratophyllum demersum HOM05D005675 ORTHO05D006884 3.3e-13 78.6 93 41.9
Glyma.01G001700 Glycine max HOM05D005675 ORTHO05D006884 9.5e-13 77.0 102 43.1
Glyma.07G130600 Glycine max HOM05D005675 ORTHO05D006884 1.2e-12 76.6 100 41.0
AUR62015436 Chenopodium quinoa HOM05D005675 ORTHO05D006884 1.6e-12 76.3 131 37.4
MBI13_g31573_MAGBIO Magnolia biondii HOM05D005675 ORTHO05D006884 1.6e-12 76.3 76 51.3
SHI13641 Sapria himalayana HOM05D005675 ORTHO05D006884 2.8e-12 75.5 110 41.8
Lalb_Chr14g0362531 Lupinus albus HOM05D005675 ORTHO05D006884 6.2e-12 74.3 89 43.8
Os06g0702800 Oryza sativa ssp. japonica HOM05D005675 ORTHO05D006884 1.4e-11 73.2 90 40.0
MELO3C020255.2 Cucumis melo HOM05D005675 ORTHO05D006884 4.4e-10 68.2 76 48.7
Haze_19098 Corylus avellana HOM05D005675 ORTHO05D006884 1.7e-09 66.2 67 55.2
Thecc.09G196800 Theobroma cacao HOM05D005675 ORTHO05D006884 1.7e-09 66.2 76 51.3
CSS0044900 Camellia sinensis var. sinensis HOM05D005675 ORTHO05D006884 7.1e-08 60.8 77 44.2
Zm00001eb227160 Zea mays HOM05D005675 ORTHO05D006884 7.1e-08 60.8 51 60.8
Pp3c9_5270 Physcomitrium patens HOM05D005675 ORTHO05D006884 4.6e-07 58.2 100 35.0
Mapoly0082s0059 Marchantia polymorpha HOM05D005675 ORTHO05D006884 1.7e-06 56.2 110 30.9


User provided reference genes

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