Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen12g008110 Solanum pennellii HOM05D004277 ORTHO05D005148 1.3e-293 1012.3 522 100.0
Solyc12g017280.2 Solanum lycopersicum HOM05D004277 ORTHO05D005148 5.7e-292 1006.9 522 99.4
Peaxi162Scf00078g01336 Petunia axillaris HOM05D004277 ORTHO05D005148 3.1e-242 841.6 533 82.4
Peaxi162Scf00006g01510 Petunia axillaris HOM05D004277 ORTHO05D005148 7.8e-241 837.0 522 82.4
Nitab4.5_0000388g0130 Nicotiana tabacum HOM05D004277 ORTHO05D005148 5.2e-229 797.7 513 82.1
Rhsim06G0241600 Rhododendron simsii HOM05D004277 ORTHO05D005148 4.0e-189 665.2 525 65.7
CSS0042003 Camellia sinensis var. sinensis HOM05D004277 ORTHO05D005148 3.8e-187 658.7 522 65.9
Actinidia12771 Actinidia chinensis HOM05D004277 ORTHO05D005148 8.4e-187 657.5 523 65.6
GSVIVG01036797001 Vitis vinifera HOM05D004277 ORTHO05D005148 4.2e-186 655.2 525 65.1
Dinv19596 Davidia involucrata HOM05D004277 ORTHO05D005148 2.3e-184 649.4 526 65.2
vmacro11705 Vaccinium macrocarpon HOM05D004277 ORTHO05D005148 3.0e-184 649.0 559 62.3
Cc05_g16300 Coffea canephora HOM05D004277 ORTHO05D005148 2.1e-182 642.9 514 64.6
Lj2A15G78 Lonicera japonica HOM05D004277 ORTHO05D005148 5.8e-180 634.8 523 64.1
Oeu019710.1 Olea europaea HOM05D004277 ORTHO05D005148 1.3e-179 633.6 524 62.6
Ciclev10007189m.g Citrus clementina HOM05D004277 ORTHO05D005148 2.1e-177 626.3 523 63.7
Atru.chr1.126 Acer truncatum HOM05D004277 ORTHO05D005148 1.0e-176 624.0 522 62.8
SGA_v2.0_scaffold239G44031 Striga asiatica HOM05D004277 ORTHO05D005148 3.7e-174 615.5 523 58.5
DCAR_019921 Daucus carota HOM05D004277 ORTHO05D005148 2.4e-173 612.8 521 61.6
Potri.007G067700 Populus trichocarpa HOM05D004277 ORTHO05D005148 5.3e-173 611.7 525 61.9
CiPaw.11G062700 Carya illinoinensis HOM05D004277 ORTHO05D005148 6.9e-173 611.3 523 61.0
FAN21G0666 Fragaria x ananassa HOM05D004277 ORTHO05D005148 2.0e-172 609.8 522 61.3
FvH4_3g15310 Fragaria vesca HOM05D004277 ORTHO05D005148 3.4e-172 609.0 522 61.1
Manes.03G176500 Manihot esculenta HOM05D004277 ORTHO05D005148 1.0e-171 607.4 523 59.8
Prupe.4G136200 Prunus persica HOM05D004277 ORTHO05D005148 2.2e-171 606.3 513 62.8
FAN11G0660 Fragaria x ananassa HOM05D004277 ORTHO05D005148 8.5e-171 604.4 522 60.9
FAN16G3091 Fragaria x ananassa HOM05D004277 ORTHO05D005148 8.5e-171 604.4 522 61.3
Aqoxy7G03893 Aquilegia oxysepala HOM05D004277 ORTHO05D005148 1.2e-169 600.5 525 59.6
Gohir.D08G252532 Gossypium hirsutum HOM05D004277 ORTHO05D005148 2.1e-169 599.7 513 62.2
Sabra07G0053700 Salix brachista HOM05D004277 ORTHO05D005148 2.7e-169 599.4 520 60.8
QL12p004433 Quercus lobata HOM05D004277 ORTHO05D005148 6.1e-169 598.2 525 61.1
SalBow7G4120 Salvia bowleyana HOM05D004277 ORTHO05D005148 6.1e-169 598.2 525 60.2
RcHm_v2.0_Chr5g0025751 Rosa chinensis HOM05D004277 ORTHO05D005148 7.9e-169 597.8 513 61.2
COL.COLO4_05147 Corchorus olitorius HOM05D004277 ORTHO05D004634 3.9e-168 595.5 513 61.2
Gorai.004G269300 Gossypium raimondii HOM05D004277 ORTHO05D005148 5.1e-168 595.1 513 62.0
TWI38G1370 Tripterygium wilfordii HOM05D004277 ORTHO05D005148 6.7e-168 594.7 523 61.0
MELO3C012612.2 Cucumis melo HOM05D004277 ORTHO05D005148 4.3e-167 592.0 516 60.9
Gohir.A08G232300 Gossypium hirsutum HOM05D004277 ORTHO05D005148 1.7e-166 590.1 513 61.2
CsaV3_7G022870 Cucumis sativus L. HOM05D004277 ORTHO05D005148 2.8e-166 589.3 516 60.3
Nn3g21002 Nelumbo nucifera HOM05D004277 ORTHO05D005148 8.2e-166 587.8 520 59.6
CANSAT80G1893 Cannabis sativa HOM05D004277 ORTHO05D005148 2.4e-165 586.3 525 60.0
ClCG09G022670 Citrullus lanatus HOM05D004277 ORTHO05D005148 7.7e-164 581.3 551 57.5
Sed0006880 Sechium edule HOM05D004277 ORTHO05D005148 7.7e-164 581.3 515 59.8
Glyma.09G284900 Glycine max HOM05D004277 ORTHO05D005148 3.8e-163 578.9 522 59.0
Migut.H01674 Erythranthe guttata HOM05D004277 ORTHO05D005148 4.2e-162 575.5 525 56.2
Psat6g100160 Pisum sativum HOM05D004277 ORTHO05D005148 5.5e-162 575.1 512 59.2
Medtr1g038850 Medicago truncatula HOM05D004277 ORTHO05D005148 1.6e-161 573.5 522 58.6
Ca_12380_v3 Cicer arietinum L. HOM05D004277 ORTHO05D005148 2.7e-161 572.8 522 59.4
Ca_12388_v3 Cicer arietinum L. HOM05D004277 ORTHO05D005148 2.7e-161 572.8 522 59.4
Phvul.003G002100 Phaseolus vulgaris HOM05D004277 ORTHO05D005148 3.0e-160 569.3 523 58.3
PGR031G1415 Punica granatum HOM05D004277 ORTHO05D005148 3.9e-160 568.9 522 58.6
Lj2g0013005 Lotus japonicus HOM05D004277 ORTHO05D005148 8.8e-160 567.8 513 59.5
PSO210G0403 Papaver somniferum HOM05D004277 ORTHO05D005148 4.8e-158 562.0 519 57.2
EL10Ac2g03265 Beta vulgaris HOM05D004277 ORTHO05D005148 1.1e-157 560.8 519 56.1
ECA240G2290 Erigeron canadensis HOM05D004277 ORTHO05D005148 1.1e-157 560.8 514 57.4
Lalb_Chr18g0046601 Lupinus albus HOM05D004277 ORTHO05D005148 9.1e-157 557.8 513 58.1
HanXRQChr03g0078241 Helianthus annuus HOM05D004277 ORTHO05D005148 2.6e-156 556.2 511 56.4
VMungo0251G3136 Vigna mungo HOM05D004277 ORTHO05D005148 2.6e-156 556.2 494 60.3
A02p22660 Brassica napus HOM05D004277 ORTHO05D005148 4.5e-156 555.4 527 55.0
BraA02t07267Z Brassica rapa HOM05D004277 ORTHO05D005148 3.8e-155 552.4 528 54.7
Aa31LG4G1820 Aethionema arabicum HOM05D004277 ORTHO05D005148 8.5e-155 551.2 526 55.1
AUR62036983 Chenopodium quinoa HOM05D004277 ORTHO05D005148 2.5e-154 549.7 519 56.5
BcaB05g25178 Brassica carinata HOM05D004277 ORTHO05D005148 4.2e-154 548.9 528 54.7
BcaC03g15873 Brassica carinata HOM05D004277 ORTHO05D005148 7.2e-154 548.1 528 54.7
Carub.0002s2606 Capsella rubella HOM05D004277 ORTHO05D005148 2.1e-153 546.6 527 55.0
CARHR072840 Cardamine hirsuta HOM05D004277 ORTHO05D005148 2.7e-153 546.2 527 55.0
Sp5g34240 Schrenkiella parvula HOM05D004277 ORTHO05D005148 8.0e-153 544.7 530 54.7
C02p36270 Brassica napus HOM05D004277 ORTHO05D005148 1.4e-152 543.9 527 55.0
Eucgr.F04450 Eucalyptus grandis HOM05D004277 ORTHO05D005148 1.4e-152 543.9 526 54.4
Lsat_1_v5_gn_7_70840 Lactuca sativa HOM05D004277 ORTHO05D005148 1.8e-152 543.5 517 56.3
AT1G79190 Arabidopsis thaliana HOM05D004277 ORTHO05D005148 2.3e-152 543.1 526 54.9
BolC2t09641H Brassica oleracea HOM05D004277 ORTHO05D005148 2.3e-152 543.1 530 54.5
Thhalv10018016m.g Eutrema salsugineum HOM05D004277 ORTHO05D005148 3.3e-151 539.3 530 53.6
PSO210G1337 Papaver somniferum HOM05D004277 ORTHO05D005148 2.2e-150 536.6 519 55.5
Sc06g0002790 Simmondsia chinensis HOM05D004277 ORTHO05D005148 2.8e-150 536.2 514 55.3
AL2G39660 Arabidopsis lyrata HOM05D004277 ORTHO05D005148 8.2e-150 534.6 527 53.9
Hma1.2p1_1054F.1_g252470 Hydrangea macrophylla HOM05D004277 ORTHO05D005148 1.8e-149 533.5 476 62.0
AUR62006227 Chenopodium quinoa HOM05D004277 ORTHO05D005148 1.6e-148 530.4 520 54.4
Ah.02g131470 Amaranthus hybridus HOM05D004277 ORTHO05D005148 1.0e-147 527.7 515 54.0
unitig_8.g4753 Utricularia gibba HOM05D004277 ORTHO05D005148 1.0e-147 527.7 518 53.1
THA.LOC104812364 Tarenaya hassleriana HOM05D004277 ORTHO05D005148 6.5e-147 525.0 526 53.8
TAR626G1109 Trochodendron aralioides HOM05D004277 ORTHO05D005148 1.1e-146 524.2 458 60.5
Thecc.07G167700 Theobroma cacao HOM05D004277 ORTHO05D005148 1.0e-144 517.7 456 60.7
arahy.Tifrunner.gnm1.ann1.3DGA3E Arachis hypogaea HOM05D004277 ORTHO05D005148 2.3e-144 516.5 541 54.5
MBI02_g15959_MAGBIO Magnolia biondii HOM05D004277 ORTHO05D005148 1.7e-139 500.4 514 53.1
arahy.Tifrunner.gnm1.ann1.J7P8I0 Arachis hypogaea HOM05D004277 ORTHO05D005148 1.2e-137 494.2 534 52.6
ATR0763G037 Amborella trichopoda HOM05D004277 ORTHO05D005148 9.1e-133 478.0 530 48.3
Nitab4.5_0009962g0020 Nicotiana tabacum HOM05D004277 ORTHO05D005148 4.7e-129 465.7 277 86.3
Zm00001eb224850 Zea mays HOM05D004277 ORTHO05D005148 1.2e-124 451.1 513 48.9
Haze_07823 Corylus avellana HOM05D004277 ORTHO05D005148 1.8e-120 437.2 349 63.6
Cpa.g.sc34.11 Carica papaya HOM05D004277 ORTHO05D005148 4.4e-119 432.6 412 55.3
HPP92_021082 Vanilla planifolia HOM05D004277 ORTHO05D005148 1.3e-99 367.9 437 49.4
SEGI_00999 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 5.2e-96 355.9 467 44.3
CDE05G2591 Ceratophyllum demersum HOM05D004277 ORTHO05D005148 8.4e-78 295.4 327 50.5
Nitab4.5_0009962g0010 Nicotiana tabacum HOM05D004277 ORTHO05D005148 1.4e-69 268.1 165 83.0
Pp3c22_19900 Physcomitrium patens HOM05D004277 ORTHO05D005148 5.0e-62 243.0 524 32.8
MD05G1224300 Malus domestica HOM05D004277 ORTHO05D005148 3.6e-52 210.3 148 73.6
MSTRG.12674 Avicennia marina HOM05D004277 ORTHO05D005148 5.7e-50 203.0 163 65.6
Mapoly0151s0022 Marchantia polymorpha HOM05D004277 ORTHO05D005148 5.9e-47 193.0 495 28.5
TAR624G0115 Trochodendron aralioides HOM05D004277 ORTHO05D005148 6.1e-44 183.0 180 56.7
MD10G1205800 Malus domestica HOM05D004277 ORTHO05D005148 7.9e-44 182.6 225 48.4
Actinidia09631 Actinidia chinensis HOM05D004277 ORTHO05D005148 3.7e-41 173.7 110 76.4
TPR.G40005 Trifolium pratense HOM05D004277 ORTHO05D005148 8.2e-41 172.6 149 63.8
MD05G1224200 Malus domestica HOM05D004277 ORTHO05D005148 1.5e-39 168.3 110 73.6
MELO3C025974.2 Cucumis melo HOM05D004277 ORTHO05D005148 1.1e-37 162.2 115 67.0
BcaB02g08672 Brassica carinata HOM05D004277 ORTHO05D005148 5.5e-37 159.8 164 54.9
Haze_07825 Corylus avellana HOM05D004277 ORTHO05D005148 2.7e-36 157.5 109 67.9
Zm00001eb060300 Zea mays HOM05D004277 ORTHO05D005148 2.2e-30 137.9 138 53.6
CBR_g39747 Chara braunii HOM05D004277 ORTHO05D005148 1.4e-24 118.6 382 26.7
CDE05G3501 Ceratophyllum demersum HOM05D003316 ORTHO05D003690 2.7e-23 114.4 118 55.9
MELO3C029569.2 Cucumis melo HOM05D004277 ORTHO05D005148 5.0e-22 110.2 77 63.6
AagrBONN_evm.TU.Sc2ySwM_228.3209 Anthoceros agrestis HOM05D004277 ORTHO05D005148 1.2e-20 105.5 109 48.6
Cre01.g039600 Chlamydomonas reinhardtii HOM05D004277 ORTHO05D005148 1.0e-19 102.4 527 23.7
MELO3C008303.2 Cucumis melo HOM05D004277 ORTHO05D005148 1.4e-19 102.1 126 44.4
SEGI_07420 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 2.3e-19 101.3 86 55.8
Cc03_g14950 Coffea canephora HOM05D004277 ORTHO05D005148 2.0e-18 98.2 61 73.8
Cc00_g15170 Coffea canephora HOM05D004277 ORTHO05D005148 1.1e-16 92.4 134 44.0
MELO3C027882.2 Cucumis melo HOM05D004277 ORTHO05D005148 5.4e-16 90.1 152 43.4
MCO13G561 Micromonas commoda HOM05D004277 ORTHO05D005148 1.1e-13 82.4 469 22.2
MD10G1205600 Malus domestica HOM05D004277 ORTHO05D005148 2.3e-11 74.7 60 55.0
PRCOL_00003205 Prasinoderma coloniale HOM05D004277 ORTHO05D005148 5.2e-11 73.6 481 22.5
TPR.G17466 Trifolium pratense HOM05D004277 ORTHO05D005148 2.0e-10 71.6 66 57.6


User provided reference genes

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