Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen12g007820 Solanum pennellii HOM05D013972 ORTHO05D000687 4.5e-59 231.5 159 100.0
Solyc12g015920.2 Solanum lycopersicum HOM05D013972 ORTHO05D000687 2.9e-58 228.8 159 96.9
PGSC0003DMG400029804 Solanum tuberosum HOM05D013972 ORTHO05D000687 1.7e-50 203.0 159 88.1
Nitab4.5_0000134g0080 Nicotiana tabacum HOM05D000913 ORTHO05D000687 1.9e-36 156.4 159 65.4
PGSC0003DMG400044148 Solanum tuberosum HOM05D013972 ORTHO05D000687 1.4e-28 130.2 161 53.4
Solyc07g065927.1 Solanum lycopersicum HOM05D000913 ORTHO05D000687 1.0e-26 124.0 160 55.0
Nitab4.5_0000152g0210 Nicotiana tabacum HOM05D013972 ORTHO05D000687 1.7e-26 123.2 159 43.4
CAN.G623.49 Capsicum annuum HOM05D013972 ORTHO05D000687 1.9e-25 119.8 157 45.2
Nitab4.5_0009707g0010 Nicotiana tabacum HOM05D013972 ORTHO05D000687 4.3e-25 118.6 161 42.2
Sopen07g034120 Solanum pennellii HOM05D013972 ORTHO05D000687 4.4e-22 108.6 156 46.2
PGSC0003DMG400022261 Solanum tuberosum HOM05D013972 ORTHO05D000687 1.9e-17 93.2 136 44.9
Migut.M01600 Erythranthe guttata HOM05D000913 ORTHO05D000687 7.6e-14 81.3 80 53.8
Solyc07g065923.1 Solanum lycopersicum HOM05D013972 ORTHO05D000687 1.1e-12 77.4 159 34.6
SalBow8G4938 Salvia bowleyana HOM05D000913 ORTHO05D000687 2.4e-12 76.3 80 51.2
Peaxi162Scf00058g00179 Petunia axillaris HOM05D013972 ORTHO05D000687 3.2e-12 75.9 75 53.3
SalBow8G4274 Salvia bowleyana HOM05D000913 ORTHO05D000687 5.4e-12 75.1 76 50.0
SalBow8G4609 Salvia bowleyana HOM05D000913 ORTHO05D000687 5.4e-12 75.1 76 50.0
SalBow8G3675 Salvia bowleyana HOM05D000913 ORTHO05D000687 1.6e-11 73.6 83 49.4
MD10G1233100 Malus domestica HOM05D000913 ORTHO05D000687 2.7e-11 72.8 74 43.2
Prupe.6G030400 Prunus persica HOM05D000913 ORTHO05D000687 7.9e-11 71.2 84 39.3
Cpa.g.sc12.187 Carica papaya HOM05D000913 ORTHO05D000687 1.0e-10 70.9 81 48.1
MD03G1039100 Malus domestica HOM05D000913 ORTHO05D000687 1.7e-10 70.1 85 37.6
MD10G1233300 Malus domestica HOM05D000913 ORTHO05D000687 8.7e-10 67.8 74 40.5
Nn5g28777 Nelumbo nucifera HOM05D000913 ORTHO05D000687 1.1e-09 67.4 79 40.5
SalBow8G5506 Salvia bowleyana HOM05D000913 ORTHO05D000687 1.1e-09 67.4 75 46.7
CiPaw.11G208300 Carya illinoinensis HOM05D000913 ORTHO05D000687 1.9e-09 66.6 76 46.1
Nn5g28779 Nelumbo nucifera HOM05D000913 ORTHO05D000687 1.9e-09 66.6 112 33.9
Nn5g28781 Nelumbo nucifera HOM05D000913 ORTHO05D000687 1.9e-09 66.6 112 33.9
Lalb_Chr22g0353261 Lupinus albus HOM05D000913 ORTHO05D000687 5.6e-09 65.1 82 41.5
MBI14_g17948_MAGBIO Magnolia biondii HOM05D000913 ORTHO05D000687 5.6e-09 65.1 79 40.5
Prupe.6G030200 Prunus persica HOM05D000913 ORTHO05D000687 5.6e-09 65.1 85 36.5
Dinv16085 Davidia involucrata HOM05D000913 ORTHO05D000687 7.3e-09 64.7 75 48.0
FAN25G0550 Fragaria x ananassa HOM05D000913 ORTHO05D000687 7.3e-09 64.7 73 42.5
Lalb_Chr22g0353251 Lupinus albus HOM05D000913 ORTHO05D000687 7.3e-09 64.7 81 42.0
Ah.12g065180 Amaranthus hybridus HOM05D000913 ORTHO05D000687 9.6e-09 64.3 82 39.0
CiPaw.01G191500 Carya illinoinensis HOM05D000913 ORTHO05D000687 9.6e-09 64.3 80 43.8
MD11G1039300 Malus domestica HOM05D000913 ORTHO05D000687 9.6e-09 64.3 76 42.1
RcHm_v2.0_Chr5g0075281 Rosa chinensis HOM05D000913 ORTHO05D000687 9.6e-09 64.3 81 38.3
Nn1g07601 Nelumbo nucifera HOM05D000913 ORTHO05D000687 1.3e-08 63.9 82 42.7
Oeu049436.1 Olea europaea HOM05D000913 ORTHO05D000687 1.3e-08 63.9 79 40.5
arahy.Tifrunner.gnm1.ann1.J75ZHQ Arachis hypogaea HOM05D000913 ORTHO05D000687 1.6e-08 63.5 85 47.1
EL10Ac2g02868 Beta vulgaris HOM05D000913 ORTHO05D000687 1.6e-08 63.5 84 39.3
Cpa.g.sc12.188 Carica papaya HOM05D000913 ORTHO05D000687 2.1e-08 63.2 82 42.7
Potri.001G468500 Populus trichocarpa HOM05D000913 ORTHO05D000687 2.1e-08 63.2 74 41.9
CiPaw.14G082800 Carya illinoinensis HOM05D000913 ORTHO05D000687 2.8e-08 62.8 75 44.0
Haze_09888 Corylus avellana HOM05D000913 ORTHO05D000687 2.8e-08 62.8 74 43.2
GSVIVG01014798001 Vitis vinifera HOM05D000913 ORTHO05D000687 3.6e-08 62.4 75 42.7
CiPaw.11G201200 Carya illinoinensis HOM05D000913 ORTHO05D000687 4.8e-08 62.0 75 41.3
MBI15_g37255_MAGBIO Magnolia biondii HOM05D000913 ORTHO05D000687 4.8e-08 62.0 81 37.0
Carub.0003s2011 Capsella rubella HOM05D000913 ORTHO05D000687 6.2e-08 61.6 74 44.6
Haze_09880 Corylus avellana HOM05D000913 ORTHO05D000687 6.2e-08 61.6 75 44.0
FAN16G2023 Fragaria x ananassa HOM05D000913 ORTHO05D000687 6.2e-08 61.6 83 39.8
Phvul.008G282300 Phaseolus vulgaris HOM05D000913 ORTHO05D000687 6.2e-08 61.6 82 43.9
Dinv03824 Davidia involucrata HOM05D000913 ORTHO05D000687 8.1e-08 61.2 162 30.9
Prupe.6G031100 Prunus persica HOM05D000913 ORTHO05D000687 8.1e-08 61.2 69 42.0
FvH4_3g42050 Fragaria vesca HOM05D000913 ORTHO05D000687 1.1e-07 60.8 74 39.2
RcHm_v2.0_Chr5g0075291 Rosa chinensis HOM05D000913 ORTHO05D000687 1.1e-07 60.8 85 40.0
FAN21G3003 Fragaria x ananassa HOM05D000913 ORTHO05D000687 1.4e-07 60.5 83 38.6
MD10G1341200 Malus domestica HOM05D000913 ORTHO05D000687 1.4e-07 60.5 66 39.4
Sc11g0006740 Simmondsia chinensis HOM05D000913 ORTHO05D000687 1.4e-07 60.5 82 39.0
CSS0038172 Camellia sinensis var. sinensis HOM05D000913 ORTHO05D000687 1.8e-07 60.1 85 47.1
FvH4_3g42060 Fragaria vesca HOM05D000913 ORTHO05D000687 1.8e-07 60.1 80 38.8
QL08p001958 Quercus lobata HOM05D000913 ORTHO05D000687 1.8e-07 60.1 82 42.7
MBI14_g48110_MAGBIO Magnolia biondii HOM05D000913 ORTHO05D000687 3.1e-07 59.3 86 39.5
MD11G1039200 Malus domestica HOM05D000913 ORTHO05D000687 3.1e-07 59.3 75 37.3
Atru.chr2.3866 Acer truncatum HOM05D000913 ORTHO05D000687 4.0e-07 58.9 75 44.0
arahy.Tifrunner.gnm1.ann1.EN7GHH Arachis hypogaea HOM05D000913 ORTHO05D000687 4.0e-07 58.9 75 37.3
arahy.Tifrunner.gnm1.ann1.JV1GEI Arachis hypogaea HOM05D000913 ORTHO05D000687 4.0e-07 58.9 75 37.3
Dinv03822 Davidia involucrata HOM05D000913 ORTHO05D000687 4.0e-07 58.9 84 40.5
Gorai.009G452700 Gossypium raimondii HOM05D000913 ORTHO05D000687 4.0e-07 58.9 75 34.7
MBI14_g16764_MAGBIO Magnolia biondii HOM05D000913 ORTHO05D000687 4.0e-07 58.9 86 39.5
Oeu049439.1 Olea europaea HOM05D000913 ORTHO05D000687 4.0e-07 58.9 76 39.5
SalBow8G3635 Salvia bowleyana HOM05D000913 ORTHO05D000687 4.0e-07 58.9 70 37.1
SalBow8G5025 Salvia bowleyana HOM05D000913 ORTHO05D000687 4.0e-07 58.9 70 37.1
AT3G20180 Arabidopsis thaliana HOM05D000913 ORTHO05D000687 5.3e-07 58.5 83 37.3
Manes.03G137300 Manihot esculenta HOM05D000913 ORTHO05D000687 5.3e-07 58.5 76 43.4
Prupe.6G030300 Prunus persica HOM05D000913 ORTHO05D000687 5.3e-07 58.5 82 35.4
Sp3g18210 Schrenkiella parvula HOM05D000913 ORTHO05D000687 5.3e-07 58.5 88 38.6
FAN11G3382 Fragaria x ananassa HOM05D000913 ORTHO05D000687 6.9e-07 58.2 78 38.5
Os02g0582600 Oryza sativa ssp. japonica HOM05D000913 ORTHO05D000687 6.9e-07 58.2 74 44.6
Prupe.6G030600 Prunus persica HOM05D000913 ORTHO05D000687 6.9e-07 58.2 81 38.3
PSO675G3882 Papaver somniferum HOM05D000913 ORTHO05D000687 9.0e-07 57.8 76 36.8
Prupe.6G030900 Prunus persica HOM05D000913 ORTHO05D000687 9.0e-07 57.8 79 38.0
RcHm_v2.0_Chr3g0484311 Rosa chinensis HOM05D000913 ORTHO05D000687 9.0e-07 57.8 75 37.3
TAR629G2544 Trochodendron aralioides HOM05D000913 ORTHO05D000687 9.0e-07 57.8 85 40.0
Aqoxy4G01749 Aquilegia oxysepala HOM05D000913 ORTHO05D000687 1.2e-06 57.4 86 38.4
arahy.Tifrunner.gnm1.ann1.FE2NQF Arachis hypogaea HOM05D000913 ORTHO05D000687 1.2e-06 57.4 85 44.7
FvH4_3g42100 Fragaria vesca HOM05D000913 ORTHO05D000687 1.2e-06 57.4 74 37.8
FAN16G3426 Fragaria x ananassa HOM05D000913 ORTHO05D000687 1.2e-06 57.4 79 36.7
Gohir.D05G386200 Gossypium hirsutum HOM05D000913 ORTHO05D000687 1.2e-06 57.4 75 34.7
QL08p001929 Quercus lobata HOM05D000913 ORTHO05D000687 1.2e-06 57.4 81 43.2
Thecc.07G006200 Theobroma cacao HOM05D000913 ORTHO05D000687 1.2e-06 57.4 75 41.3
Cpa.g.sc12.95 Carica papaya HOM05D000913 ORTHO05D000687 1.5e-06 57.0 85 32.9
Nn5g28780 Nelumbo nucifera HOM05D000913 ORTHO05D000687 1.5e-06 57.0 72 37.5
Oeu049442.1 Olea europaea HOM05D000913 ORTHO05D000687 1.5e-06 57.0 77 39.0
Zm00001eb080130 Zea mays HOM05D000913 ORTHO05D000687 1.5e-06 57.0 83 37.3
MBI14_g16762_MAGBIO Magnolia biondii HOM05D000913 ORTHO05D000687 2.0e-06 56.6 84 39.3
Migut.E01774 Erythranthe guttata HOM05D000913 ORTHO05D000687 2.6e-06 56.2 75 41.3
Eucgr.F03666 Eucalyptus grandis HOM05D000913 ORTHO05D000687 2.6e-06 56.2 83 41.0
FAN21G0520 Fragaria x ananassa HOM05D000913 ORTHO05D000687 2.6e-06 56.2 73 35.6
Glyma.07G098500 Glycine max HOM05D000913 ORTHO05D000687 2.6e-06 56.2 159 27.7
Glyma.09G179800 Glycine max HOM05D000913 ORTHO05D000687 2.6e-06 56.2 74 37.8
Gohir.A04G008700 Gossypium hirsutum HOM05D000913 ORTHO05D000687 2.6e-06 56.2 79 38.0
MD03G1038400 Malus domestica HOM05D000913 ORTHO05D000687 2.6e-06 56.2 74 37.8
MD03G1039000 Malus domestica HOM05D000913 ORTHO05D000687 2.6e-06 56.2 81 37.0
QL08p002030 Quercus lobata HOM05D000913 ORTHO05D000687 2.6e-06 56.2 85 43.5
Thecc.07G006400 Theobroma cacao HOM05D000913 ORTHO05D000687 2.6e-06 56.2 84 36.9
FvH4_3g42110 Fragaria vesca HOM05D000913 ORTHO05D000687 3.4e-06 55.8 74 36.5
QL08p002131 Quercus lobata HOM05D000913 ORTHO05D000687 3.4e-06 55.8 85 37.6
QL08p002158 Quercus lobata HOM05D000913 ORTHO05D000687 3.4e-06 55.8 73 35.6
Sabra01G0038000 Salix brachista HOM05D000913 ORTHO05D000687 3.4e-06 55.8 74 40.5
unitig_46.g18288 Utricularia gibba HOM05D061876 ORTHO05D051521 3.4e-06 55.8 75 42.7
arahy.Tifrunner.gnm1.ann1.B2ZTLF Arachis hypogaea HOM05D000913 ORTHO05D000687 4.5e-06 55.5 79 40.5
arahy.Tifrunner.gnm1.ann1.E2IRB4 Arachis hypogaea HOM05D000913 ORTHO05D000687 4.5e-06 55.5 74 33.8
Gorai.009G452900 Gossypium raimondii HOM05D000913 ORTHO05D000687 4.5e-06 55.5 75 36.0
MBI16_g31488_MAGBIO Magnolia biondii HOM05D000913 ORTHO05D000687 4.5e-06 55.5 65 40.0
MD03G1038100 Malus domestica HOM05D000913 ORTHO05D000687 4.5e-06 55.5 84 33.3
Sc11g0006750 Simmondsia chinensis HOM05D000913 ORTHO05D000687 4.5e-06 55.5 78 38.5
arahy.Tifrunner.gnm1.ann1.IVAP43 Arachis hypogaea HOM05D000913 ORTHO05D000687 5.8e-06 55.1 75 36.0
BolC1t05541H Brassica oleracea HOM05D000191 ORTHO05D000122 5.8e-06 55.1 81 37.0
CANSAT11G0550 Cannabis sativa HOM05D000913 ORTHO05D000687 5.8e-06 55.1 75 37.3
AUR62026813 Chenopodium quinoa HOM05D000913 ORTHO05D000687 5.8e-06 55.1 70 41.4
FAN16G0947 Fragaria x ananassa HOM05D000913 ORTHO05D000687 5.8e-06 55.1 72 34.7
HanXRQChr14g0430241 Helianthus annuus HOM05D000913 ORTHO05D000687 5.8e-06 55.1 74 36.5
MBI14_g16765_MAGBIO Magnolia biondii HOM05D000913 ORTHO05D000687 5.8e-06 55.1 81 37.0
QL08p002039 Quercus lobata HOM05D000913 ORTHO05D000687 5.8e-06 55.1 85 38.8
RcHm_v2.0_Chr5g0000231 Rosa chinensis HOM05D000913 ORTHO05D000687 5.8e-06 55.1 73 34.2
AL3G33880 Arabidopsis lyrata HOM05D000913 ORTHO05D000687 7.6e-06 54.7 80 35.0
BcaB04g21280 Brassica carinata HOM05D000913 ORTHO05D000687 7.6e-06 54.7 80 37.5
CANSAT56G3334 Cannabis sativa HOM05D000913 ORTHO05D000687 7.6e-06 54.7 73 39.7
Haze_09886 Corylus avellana HOM05D001067 ORTHO05D000876 7.6e-06 54.7 73 42.5
Dinv05335 Davidia involucrata HOM05D000913 ORTHO05D000687 7.6e-06 54.7 86 40.7
Hma1.2p1_0048F.1_g028140 Hydrangea macrophylla HOM05D000913 ORTHO05D000687 7.6e-06 54.7 75 34.7
MD03G1038900 Malus domestica HOM05D000913 ORTHO05D000687 7.6e-06 54.7 80 37.5
MD09G1133200 Malus domestica HOM05D000913 ORTHO05D000687 7.6e-06 54.7 84 38.1
QL08p002202 Quercus lobata HOM05D000913 ORTHO05D000687 7.6e-06 54.7 74 36.5
GSVIVG01014795001 Vitis vinifera HOM05D000913 ORTHO05D000687 7.6e-06 54.7 75 40.0
Duzib268G1294 Durio zibethinus HOM05D000913 ORTHO05D000687 9.9e-06 54.3 84 33.3
Duzib268G1311 Durio zibethinus HOM05D000913 ORTHO05D000687 9.9e-06 54.3 86 37.2
FAN21G1287 Fragaria x ananassa HOM05D000913 ORTHO05D000687 9.9e-06 54.3 85 37.6
Manes.11G055424 Manihot esculenta HOM05D000913 ORTHO05D000687 9.9e-06 54.3 86 37.2
Oeu049450.1 Olea europaea HOM05D000913 ORTHO05D000687 9.9e-06 54.3 74 39.2
PSO017G1569 Papaver somniferum HOM05D000913 ORTHO05D000687 9.9e-06 54.3 76 36.8
Psat1g171760 Pisum sativum HOM05D000913 ORTHO05D000687 9.9e-06 54.3 75 34.7
QL08p005455 Quercus lobata HOM05D000913 ORTHO05D000687 9.9e-06 54.3 81 38.3
TPR.G31615 Trifolium pratense HOM05D000913 ORTHO05D000687 9.9e-06 54.3 71 38.0
vmacro11625 Vaccinium macrocarpon HOM05D000913 ORTHO05D000687 9.9e-06 54.3 86 39.5
GSVIVG01014802001 Vitis vinifera HOM05D000913 ORTHO05D000687 9.9e-06 54.3 65 43.1
Zm00001eb080210 Zea mays HOM05D000913 ORTHO05D000687 9.9e-06 54.3 83 39.8


User provided reference genes

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