Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen12g007550 Solanum pennellii HOM05D007725 ORTHO05D009774 1.2e-187 660.2 470 100.0
Solyc12g015650.3 Solanum lycopersicum HOM05D007725 ORTHO05D009774 1.3e-183 646.7 470 98.7
PGSC0003DMG402029798 Solanum tuberosum HOM05D007725 ORTHO05D009774 4.3e-182 641.7 470 97.2
Nitab4.5_0002517g0030 Nicotiana tabacum HOM05D007725 ORTHO05D009774 1.7e-162 576.6 468 88.2
Peaxi162Scf00955g00014 Petunia axillaris HOM05D007725 ORTHO05D009774 1.8e-159 566.6 465 88.8
Nitab4.5_0000163g0300 Nicotiana tabacum HOM05D007725 ORTHO05D009774 1.8e-132 476.9 468 78.6
CSS0027076 Camellia sinensis var. sinensis HOM05D007725 ORTHO05D009774 3.2e-100 369.8 463 65.2
Lj1P886T16 Lonicera japonica HOM05D007725 ORTHO05D009774 1.5e-89 334.3 455 66.4
DCAR_022605 Daucus carota HOM05D007725 ORTHO05D009774 2.4e-84 317.0 447 59.3
MSTRG.15782 Avicennia marina HOM05D007725 ORTHO05D009774 1.2e-83 314.7 468 62.2
Cc05_g14730 Coffea canephora HOM05D007725 ORTHO05D009774 3.5e-83 313.2 460 63.7
GSVIVG01037783001 Vitis vinifera HOM05D007725 ORTHO05D009774 5.1e-82 309.3 456 63.4
Nn1g03245 Nelumbo nucifera HOM05D007725 ORTHO05D009774 6.6e-82 308.9 467 61.5
Ciclev10008214m.g Citrus clementina HOM05D007725 ORTHO05D009774 1.2e-80 304.7 455 65.3
Duzib170G0716 Durio zibethinus HOM05D007725 ORTHO05D009774 1.1e-79 301.6 448 60.9
Dinv10315 Davidia involucrata HOM05D007725 ORTHO05D009774 3.8e-77 293.1 445 64.9
Glyma.08G326100 Glycine max HOM05D007725 ORTHO05D009774 3.8e-77 293.1 455 57.1
Medtr3g056580 Medicago truncatula HOM05D007725 ORTHO05D009774 4.9e-77 292.7 459 50.1
VMungo0540G1375 Vigna mungo HOM05D007725 ORTHO05D009774 5.4e-76 289.3 454 57.0
HanXRQChr11g0333971 Helianthus annuus HOM05D007725 ORTHO05D009774 7.8e-75 285.4 457 54.0
COL.COLO4_09791 Corchorus olitorius HOM05D007725 ORTHO05D009774 1.3e-74 284.6 452 58.6
Nn1g07446 Nelumbo nucifera HOM05D007725 ORTHO05D009774 5.1e-74 282.7 455 56.9
Gohir.A11G277300 Gossypium hirsutum HOM05D007725 ORTHO05D009774 1.1e-73 281.6 449 54.3
Gorai.007G311000 Gossypium raimondii HOM05D007725 ORTHO05D009774 1.9e-73 280.8 449 51.2
Hma1.2p1_2796F.1_g328670 Hydrangea macrophylla HOM05D007725 ORTHO05D009774 3.1e-71 273.5 460 60.0
Migut.M01753 Erythranthe guttata HOM05D007725 ORTHO05D009774 4.0e-71 273.1 448 62.7
ClCG09G021110 Citrullus lanatus HOM05D007725 ORTHO05D009774 1.5e-70 271.2 460 57.8
TAR624G0507 Trochodendron aralioides HOM05D007725 ORTHO05D009774 2.0e-70 270.8 465 58.1
QL08p005480 Quercus lobata HOM05D007725 ORTHO05D009774 3.2e-68 263.5 456 59.4
GSVIVG01037784001 Vitis vinifera HOM05D007725 ORTHO05D009774 2.3e-66 257.3 475 52.8
SalBow8G2031 Salvia bowleyana HOM05D007725 ORTHO05D009774 2.5e-65 253.8 427 64.4
CsaV3_7G018510 Cucumis sativus L. HOM05D007725 ORTHO05D009774 5.6e-65 252.7 459 56.4
Gohir.D11G287700 Gossypium hirsutum HOM05D007725 ORTHO05D009774 3.6e-64 250.0 449 46.8
MELO3C024908.2 Cucumis melo HOM05D007725 ORTHO05D009774 2.4e-63 247.3 441 54.6
Cfa020227 Carpinus fangiana HOM05D007725 ORTHO05D009774 1.5e-62 244.6 474 52.7
Haze_09790 Corylus avellana HOM05D007725 ORTHO05D009774 5.8e-62 242.7 470 56.0
PSO478G1598 Papaver somniferum HOM05D007725 ORTHO05D009774 1.7e-61 241.1 456 55.9
Psat5g175640 Pisum sativum HOM05D007725 ORTHO05D009774 2.2e-61 240.7 465 55.7
TPR.G1953 Trifolium pratense HOM05D007725 ORTHO05D009774 2.2e-61 240.7 457 36.5
Cpa.g.sc12.189 Carica papaya HOM05D007725 ORTHO05D009774 2.9e-61 240.4 467 53.5
Sed0002917 Sechium edule HOM05D007725 ORTHO05D009774 6.4e-61 239.2 463 54.4
AT3G20170 Arabidopsis thaliana HOM05D007725 ORTHO05D009774 1.6e-59 234.6 457 56.7
Carub.0003s2010 Capsella rubella HOM05D007725 ORTHO05D009774 2.7e-59 233.8 462 56.5
SGA_v2.0_scaffold168G38532 Striga asiatica HOM05D007725 ORTHO05D009774 6.0e-59 232.6 450 36.0
Aa31LG8G7000 Aethionema arabicum HOM05D007725 ORTHO05D009774 7.9e-59 232.3 464 56.5
Oeu005490.1 Olea europaea HOM05D007725 ORTHO05D009774 1.0e-58 231.9 200 61.5
Ca_26464_v3 Cicer arietinum L. HOM05D007725 ORTHO05D009774 1.3e-58 231.5 460 46.3
Nn1g03425 Nelumbo nucifera HOM05D007725 ORTHO05D009774 1.8e-58 231.1 473 55.0
Manes.03G138100 Manihot esculenta HOM05D007725 ORTHO05D009774 6.7e-58 229.2 461 55.5
Sp3g18200 Schrenkiella parvula HOM05D007725 ORTHO05D009774 1.5e-57 228.0 458 55.7
Thhalv10020642m.g Eutrema salsugineum HOM05D007725 ORTHO05D009774 5.6e-57 226.1 462 56.3
CARHR095760 Cardamine hirsuta HOM05D007725 ORTHO05D009774 1.3e-56 224.9 461 53.8
AL3G33870 Arabidopsis lyrata HOM05D007725 ORTHO05D009774 2.1e-56 224.2 454 54.0
C05p44210 Brassica napus HOM05D007725 ORTHO05D009774 3.7e-56 223.4 457 55.4
SEGI_22467 Sequoiadendron giganteum HOM05D007725 ORTHO05D009774 1.4e-55 221.5 442 56.6
BolC5t33143H Brassica oleracea HOM05D007725 ORTHO05D009774 2.4e-55 220.7 457 55.1
BcaB04g19094 Brassica carinata HOM05D007725 ORTHO05D009774 3.1e-55 220.3 458 56.1
arahy.Tifrunner.gnm1.ann1.TWJV4J Arachis hypogaea HOM05D007725 ORTHO05D009774 4.0e-55 219.9 456 51.8
arahy.Tifrunner.gnm1.ann1.Q8DMES Arachis hypogaea HOM05D007725 ORTHO05D009774 1.2e-54 218.4 458 55.5
A05p28800 Brassica napus HOM05D007725 ORTHO05D009774 1.5e-54 218.0 457 54.9
arahy.Tifrunner.gnm1.ann1.LCTM2T Arachis hypogaea HOM05D007725 ORTHO05D009774 2.0e-54 217.6 456 52.2
PGR031G2940 Punica granatum HOM05D007725 ORTHO05D009774 6.5e-53 212.6 464 45.5
BolC3t17381H Brassica oleracea HOM05D007725 ORTHO05D009774 3.2e-52 210.3 458 53.5
A03p41610 Brassica napus HOM05D007725 ORTHO05D009774 7.1e-52 209.1 457 53.6
BraA03t13314Z Brassica rapa HOM05D007725 ORTHO05D009774 7.1e-52 209.1 457 53.6
C03p50970 Brassica napus HOM05D007725 ORTHO05D009774 2.7e-51 207.2 458 53.1
ATR1149G149 Amborella trichopoda HOM05D007725 ORTHO05D009774 1.3e-48 198.4 453 53.4
EL10Ac4g07611 Beta vulgaris HOM05D007725 ORTHO05D009774 3.7e-48 196.8 351 57.0
Phvul.006G053700 Phaseolus vulgaris HOM05D007725 ORTHO05D009774 1.1e-47 195.3 359 57.9
Lj6g0016094 Lotus japonicus HOM05D007725 ORTHO05D009774 2.2e-45 187.6 455 50.1
AUR62040655 Chenopodium quinoa HOM05D007725 ORTHO05D009774 1.8e-42 177.9 465 49.2
Lj6g0003901 Lotus japonicus HOM05D007725 ORTHO05D009774 2.5e-41 174.1 360 51.9
Lj6g0024671 Lotus japonicus HOM05D007725 ORTHO05D009774 3.3e-41 173.7 462 47.8
Lj2g0017250 Lotus japonicus HOM05D007725 ORTHO05D009774 7.4e-41 172.6 347 33.7
COL.COLO4_09793 Corchorus olitorius HOM05D007725 ORTHO05D009774 1.6e-40 171.4 181 52.5
AUR62017062 Chenopodium quinoa HOM05D007725 ORTHO05D009774 6.3e-40 169.5 465 48.4
Thecc.07G022000 Theobroma cacao HOM05D007725 ORTHO05D009774 4.3e-33 146.7 172 47.1
HPP92_006089 Vanilla planifolia HOM05D007725 ORTHO05D009774 2.8e-32 144.1 452 48.0
BraA05t21757Z Brassica rapa HOM05D007725 ORTHO05D009774 4.8e-32 143.3 204 44.6
TPR.G1910 Trifolium pratense HOM05D007725 ORTHO05D009774 3.0e-18 97.4 90 57.8
BcaC01g03576 Brassica carinata HOM05D007725 ORTHO05D009774 1.1e-17 95.5 144 41.7
HanXRQChr06g0184751 Helianthus annuus HOM05D007725 ORTHO05D009774 3.5e-14 84.0 148 34.5
BcaC02g11617 Brassica carinata HOM05D007725 ORTHO05D009774 2.0e-09 68.2 48 68.8
CDE04G3331 Ceratophyllum demersum HOM05D000050 ORTHO05D009774 2.0e-09 68.2 158 29.7


User provided reference genes

Program Settings