Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen12g007540 Solanum pennellii HOM05D006454 ORTHO05D008024 9.0e-183 644.0 486 100.0
Solyc12g015640.2 Solanum lycopersicum HOM05D006454 ORTHO05D008024 5.8e-174 614.8 486 94.0
Peaxi162Scf00955g00214 Petunia axillaris HOM05D006454 ORTHO05D008024 1.9e-140 503.4 504 82.3
CAN.G1239.14 Capsicum annuum HOM05D006454 ORTHO05D008024 3.5e-134 482.6 488 84.2
Nitab4.5_0000163g0310 Nicotiana tabacum HOM05D006454 ORTHO05D008024 2.2e-133 479.9 494 81.2
Nitab4.5_0002517g0040 Nicotiana tabacum HOM05D006454 ORTHO05D008024 6.1e-123 445.3 491 77.6
SalBow8G0989 Salvia bowleyana HOM05D006454 ORTHO05D008024 6.6e-93 345.5 506 65.6
TAR626G0559 Trochodendron aralioides HOM05D006454 ORTHO05D008024 1.1e-90 338.2 471 68.6
DCAR_013215 Daucus carota HOM05D006454 ORTHO05D008024 4.4e-89 332.8 446 71.5
Migut.M01675 Erythranthe guttata HOM05D006454 ORTHO05D008024 9.9e-89 331.6 480 64.2
FAN21G2064 Fragaria x ananassa HOM05D006454 ORTHO05D008024 3.2e-87 326.6 456 67.1
Prupe.4G234400 Prunus persica HOM05D006454 ORTHO05D008024 3.2e-87 326.6 463 68.3
FvH4_3g24060 Fragaria vesca HOM05D006454 ORTHO05D008024 9.2e-87 325.1 457 68.1
FAN11G0689 Fragaria x ananassa HOM05D006454 ORTHO05D008024 9.2e-87 325.1 457 68.1
FAN25G1123 Fragaria x ananassa HOM05D006454 ORTHO05D008024 1.6e-86 324.3 450 68.2
MD11G1204700 Malus domestica HOM05D006454 ORTHO05D008024 1.6e-86 324.3 450 68.0
FAN25G3289 Fragaria x ananassa HOM05D006454 ORTHO05D008024 2.1e-86 323.9 456 67.5
QL08p005504 Quercus lobata HOM05D006454 ORTHO05D008024 2.7e-86 323.6 450 67.3
CSS0002313 Camellia sinensis var. sinensis HOM05D006454 ORTHO05D000036 5.1e-85 319.3 386 73.8
RcHm_v2.0_Chr5g0042641 Rosa chinensis HOM05D006454 ORTHO05D008024 3.3e-84 316.6 456 66.9
MBI16_g11566_MAGBIO Magnolia biondii HOM05D006454 ORTHO05D008024 9.5e-84 315.1 517 63.6
Oeu054328.1 Olea europaea HOM05D006454 ORTHO05D008024 1.4e-82 311.2 520 61.7
ECA246G2030 Erigeron canadensis HOM05D006454 ORTHO05D008024 2.4e-82 310.5 443 63.7
Haze_09788 Corylus avellana HOM05D006454 ORTHO05D008024 3.1e-82 310.1 472 66.9
Cfa020229 Carpinus fangiana HOM05D006454 ORTHO05D008024 1.2e-81 308.1 472 66.5
MELO3C024909.2 Cucumis melo HOM05D006454 ORTHO05D008024 1.2e-81 308.1 481 62.0
HanXRQChr08g0235811 Helianthus annuus HOM05D006454 ORTHO05D008024 6.4e-80 302.4 476 62.6
Thecc.07G022300 Theobroma cacao HOM05D006454 ORTHO05D008024 2.1e-78 297.4 483 62.9
Medtr5g094610 Medicago truncatula HOM05D006454 ORTHO05D008024 1.3e-77 294.7 491 62.7
A03p13940 Brassica napus HOM05D006454 ORTHO05D008024 3.9e-77 293.1 454 65.9
C03p16380 Brassica napus HOM05D006454 ORTHO05D008024 3.9e-77 293.1 456 64.3
BraA03t10695Z Brassica rapa HOM05D006454 ORTHO05D008024 3.9e-77 293.1 454 65.9
PGSC0003DMG401029813 Solanum tuberosum HOM05D006454 ORTHO05D008024 3.9e-77 293.1 293 99.7
BcaC01g06383 Brassica carinata HOM05D006454 ORTHO05D008024 5.1e-77 292.7 456 64.3
BolC3t14060H Brassica oleracea HOM05D006454 ORTHO05D008024 8.7e-77 292.0 457 63.9
Lalb_Chr04g0247971 Lupinus albus HOM05D006454 ORTHO05D008024 8.7e-77 292.0 451 66.1
BcaB01g04358 Brassica carinata HOM05D006454 ORTHO05D008024 1.1e-76 291.6 456 65.6
Sp6g17500 Schrenkiella parvula HOM05D006454 ORTHO05D008024 1.1e-76 291.6 482 60.6
AL8G31150 Arabidopsis lyrata HOM05D006454 ORTHO05D008024 2.5e-76 290.4 483 60.2
Thhalv10013311m.g Eutrema salsugineum HOM05D006454 ORTHO05D008024 3.3e-76 290.0 467 54.8
MSTRG.6985 Avicennia marina HOM05D006454 ORTHO05D008024 5.6e-76 289.3 499 61.5
Lj1A885G30 Lonicera japonica HOM05D006454 ORTHO05D008024 1.6e-75 287.7 354 78.2
Carub.0008s1595 Capsella rubella HOM05D006454 ORTHO05D008024 6.2e-75 285.8 470 62.3
Aa31LG3G11530 Aethionema arabicum HOM05D006454 ORTHO05D008024 2.4e-74 283.9 460 63.9
Phvul.008G275700 Phaseolus vulgaris HOM05D006454 ORTHO05D008024 2.4e-74 283.9 458 66.2
Rhsim06G0226800 Rhododendron simsii HOM05D006454 ORTHO05D008024 4.0e-74 283.1 402 68.4
Sed0021870 Sechium edule HOM05D006454 ORTHO05D008024 5.2e-74 282.7 499 60.5
LjContig00272g0005215 Lotus japonicus HOM05D006454 ORTHO05D008024 2.6e-73 280.4 475 64.4
AT5G55580 Arabidopsis thaliana HOM05D006454 ORTHO05D008024 3.4e-73 280.0 472 63.6
TPR.G14154 Trifolium pratense HOM05D006454 ORTHO05D008024 4.4e-73 279.6 471 64.1
ATR1149G086 Amborella trichopoda HOM05D006454 ORTHO05D008024 2.9e-72 276.9 514 58.2
Gorai.013G155100 Gossypium raimondii HOM05D006454 ORTHO05D008024 1.4e-71 274.6 508 57.7
Lsat_1_v5_gn_5_8060 Lactuca sativa HOM05D006454 ORTHO05D008024 1.4e-71 274.6 491 60.1
Gohir.D13G138500 Gossypium hirsutum HOM05D006454 ORTHO05D008024 3.2e-71 273.5 508 58.1
THA.LOC104813444 Tarenaya hassleriana HOM05D006454 ORTHO05D008024 3.2e-71 273.5 468 61.8
Gohir.A13G134866 Gossypium hirsutum HOM05D006454 ORTHO05D008024 5.4e-71 272.7 508 57.5
Cc05_g14700 Coffea canephora HOM05D006454 ORTHO05D008024 7.1e-71 272.3 511 56.9
MD03G1188700 Malus domestica HOM05D006454 ORTHO05D008024 9.3e-71 271.9 461 61.8
Aqoxy4G02215 Aquilegia oxysepala HOM05D006454 ORTHO05D008024 4.6e-70 269.6 475 63.4
CARHR268890 Cardamine hirsuta HOM05D006454 ORTHO05D008024 4.6e-70 269.6 329 78.1
Ca_06374_v3 Cicer arietinum L. HOM05D006454 ORTHO05D000136 4.6e-70 269.6 366 71.6
vmacro11560 Vaccinium macrocarpon HOM05D006454 ORTHO05D008024 4.6e-70 269.6 400 69.2
CsaV3_7G018450 Cucumis sativus L. HOM05D006454 ORTHO05D008024 2.3e-69 267.3 476 60.7
ClCG09G021120 Citrullus lanatus HOM05D006454 ORTHO05D008024 6.6e-69 265.8 477 61.4
CANSAT11G2145 Cannabis sativa HOM05D006454 ORTHO05D008024 8.7e-69 265.4 501 55.1
Atru.chr2.3605 Acer truncatum HOM05D006454 ORTHO05D008024 3.3e-68 263.5 491 60.5
Actinidia05032 Actinidia chinensis HOM05D006454 ORTHO05D008024 7.3e-68 262.3 507 58.2
CDE12G0728 Ceratophyllum demersum HOM05D006454 ORTHO05D008024 7.3e-68 262.3 404 65.3
Sabra11G0078800 Salix brachista HOM05D006454 ORTHO05D008024 9.6e-68 261.9 458 61.1
Sabra11G0073300 Salix brachista HOM05D006454 ORTHO05D008024 2.1e-67 260.8 458 61.1
Potri.001G361800 Populus trichocarpa HOM05D006454 ORTHO05D008024 3.6e-67 260.0 487 56.5
Eucgr.F03524 Eucalyptus grandis HOM05D006454 ORTHO05D008024 4.8e-67 259.6 468 61.5
Glyma.14G015800 Glycine max HOM05D006454 ORTHO05D008024 5.3e-66 256.1 453 63.4
CiPaw.11G201000 Carya illinoinensis HOM05D006454 ORTHO05D008024 6.9e-66 255.8 329 75.1
Manes.15G063200 Manihot esculenta HOM05D006454 ORTHO05D008024 6.9e-66 255.8 460 61.1
TWI39G0040 Tripterygium wilfordii HOM05D006454 ORTHO05D008024 1.5e-65 254.6 467 61.5
CAN.G489.2 Capsicum annuum HOM05D006454 ORTHO05D008024 3.4e-65 253.4 302 67.9
arahy.Tifrunner.gnm1.ann1.AYWF3K Arachis hypogaea HOM05D006454 ORTHO05D008024 4.5e-65 253.1 448 61.4
SGA_v2.0_scaffold171G38887 Striga asiatica HOM05D006454 ORTHO05D008024 9.9e-65 251.9 474 59.9
Ciclev10008511m.g Citrus clementina HOM05D006454 ORTHO05D008024 2.9e-64 250.4 504 57.1
arahy.Tifrunner.gnm1.ann1.IBL7LR Arachis hypogaea HOM05D006454 ORTHO05D008024 8.4e-64 248.8 434 60.6
PSO675G2716 Papaver somniferum HOM05D006454 ORTHO05D008024 1.4e-63 248.1 471 60.1
PSO541G2941 Papaver somniferum HOM05D006454 ORTHO05D008024 4.2e-63 246.5 469 60.8
VMungo0647G1066 Vigna mungo HOM05D006454 ORTHO05D008024 7.1e-63 245.7 445 61.8
Dinv40835 Davidia involucrata HOM05D006454 ORTHO05D008024 9.3e-63 245.4 293 82.9
Glyma.02G297900 Glycine max HOM05D006454 ORTHO05D008024 2.1e-62 244.2 447 62.0
AUR62017060 Chenopodium quinoa HOM05D006454 ORTHO05D008024 3.5e-62 243.4 439 60.6
AUR62040658 Chenopodium quinoa HOM05D006454 ORTHO05D008024 6.0e-62 242.7 445 57.3
Ah.04g166440 Amaranthus hybridus HOM05D006454 ORTHO05D008024 5.6e-60 236.1 453 59.4
CiPaw.12G136000 Carya illinoinensis HOM05D006454 ORTHO05D008024 2.4e-58 230.7 511 52.1
Psat2g008800 Pisum sativum HOM05D006454 ORTHO05D008024 2.9e-56 223.8 483 56.5
EL10Ac4g07613 Beta vulgaris HOM05D006454 ORTHO05D008024 3.8e-56 223.4 459 58.4
GSVIVG01037780001 Vitis vinifera HOM05D006454 ORTHO05D008024 3.1e-50 203.8 448 54.5
Actinidia00093 Actinidia chinensis HOM05D006454 ORTHO05D008024 2.0e-49 201.1 432 57.6
COL.COLO4_09787 Corchorus olitorius HOM05D006454 ORTHO05D008024 2.7e-46 190.7 447 55.7
HPP92_007883 Vanilla planifolia HOM05D006454 ORTHO05D008024 6.0e-46 189.5 336 64.3
Oeu031063.1 Olea europaea HOM05D006454 ORTHO05D008024 5.1e-45 186.4 293 76.5
Hund01917 Selenicereus undatus HOM05D006454 ORTHO05D008024 2.5e-44 184.1 382 61.0
PGR031G1939 Punica granatum HOM05D006454 ORTHO05D008024 7.4e-44 182.6 475 50.3
Sc16g0003560 Simmondsia chinensis HOM05D006454 ORTHO05D008024 1.6e-43 181.4 226 46.5
PGSC0003DMG402029813 Solanum tuberosum HOM05D006454 ORTHO05D008024 1.6e-38 164.9 121 82.6
Cpa.g.sc12.193 Carica papaya HOM05D006454 ORTHO05D008024 2.3e-37 161.0 215 48.4
Prupe.4G234100 Prunus persica HOM05D006454 ORTHO05D008024 8.8e-37 159.1 235 81.3
Cpa.g.sc12.192 Carica papaya HOM05D006454 ORTHO05D008024 1.3e-35 155.2 120 78.3
Hund01916 Selenicereus undatus HOM05D006454 ORTHO05D008024 1.5e-33 148.3 463 29.6
unitig_899.g15274 Utricularia gibba HOM05D006454 ORTHO05D008024 3.8e-32 143.7 204 43.1
Zm00001eb107900 Zea mays HOM05D006454 ORTHO05D008024 1.0e-29 135.6 457 50.5
HPP92_007898 Vanilla planifolia HOM05D006454 ORTHO05D008024 1.4e-29 135.2 290 66.6
BcaNung06723 Brassica carinata HOM05D000081 ORTHO05D008024 2.3e-29 134.4 257 48.6
Nn1g07440 Nelumbo nucifera HOM05D006454 ORTHO05D008024 6.7e-29 132.9 109 78.9
Os07g0583200 Oryza sativa ssp. japonica HOM05D006454 ORTHO05D008024 5.7e-28 129.8 355 53.8
BolC2t07758H Brassica oleracea HOM05D006454 ORTHO05D008024 6.1e-22 109.8 86 60.5
SEGI_11937 Sequoiadendron giganteum HOM05D047912 ORTHO05D008024 1.7e-19 101.7 332 53.0
Pp3c7_3780 Physcomitrium patens HOM05D006454 ORTHO05D008024 2.4e-18 97.8 386 50.8
Mapoly0042s0040 Marchantia polymorpha HOM05D006454 ORTHO05D008024 1.6e-17 95.1 383 47.8
BcaNung06724 Brassica carinata HOM05D006454 ORTHO05D008024 3.8e-16 90.5 54 79.6
Pp3c11_22990 Physcomitrium patens HOM05D006454 ORTHO05D008024 8.0e-14 82.8 382 48.2
vmacro10144 Vaccinium macrocarpon HOM05D006454 ORTHO05D008024 8.0e-14 82.8 258 29.1
AagrBONN_evm.TU.Sc2ySwM_117.1902 Anthoceros agrestis HOM05D006454 ORTHO05D008024 7.0e-10 69.7 143 30.1
Oeu034554.1 Olea europaea HOM05D006454 ORTHO05D008024 4.5e-09 67.0 78 52.6
MCO01G181 Micromonas commoda HOM05D006454 ORTHO05D008024 1.3e-08 65.5 112 47.3
PRCOL_00000825 Prasinoderma coloniale HOM05D006454 ORTHO05D008024 2.9e-08 64.3 114 28.9


User provided reference genes

Program Settings