Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen12g007530 Solanum pennellii HOM05D007550 ORTHO05D009474 1.0e-66 256.5 124 100.0
Solyc12g015630.2 Solanum lycopersicum HOM05D007550 ORTHO05D009474 2.5e-65 251.9 125 99.2
PGSC0003DMG400029800 Solanum tuberosum HOM05D007550 ORTHO05D009474 2.2e-61 238.8 125 94.4
Peaxi162Scf00955g00219 Petunia axillaris HOM05D007550 ORTHO05D009474 1.4e-39 166.4 114 75.4
CAN.G410.43 Capsicum annuum HOM05D007550 ORTHO05D009474 4.1e-39 164.9 98 82.7
Nitab4.5_0001750g0040 Nicotiana tabacum HOM05D007550 ORTHO05D009474 4.1e-39 164.9 121 74.4
Nitab4.5_0000163g0330 Nicotiana tabacum HOM05D007550 ORTHO05D009474 5.3e-39 164.5 117 73.5
Dinv10312 Davidia involucrata HOM05D007550 ORTHO05D009474 5.3e-31 137.9 88 75.0
TWI38G1227 Tripterygium wilfordii HOM05D007550 ORTHO05D009474 2.6e-30 135.6 110 56.4
Lj1A885G31 Lonicera japonica HOM05D007550 ORTHO05D009474 5.9e-30 134.4 96 63.5
GSVIVG01037778001 Vitis vinifera HOM05D007550 ORTHO05D009474 5.9e-30 134.4 102 62.7
Migut.M01677 Erythranthe guttata HOM05D007550 ORTHO05D009474 3.8e-29 131.7 81 76.5
Manes.15G063300 Manihot esculenta HOM05D007550 ORTHO05D009474 3.8e-29 131.7 88 70.5
Sc18g0004240 Simmondsia chinensis HOM05D007550 ORTHO05D009474 5.0e-29 131.3 92 65.2
QL08p005510 Quercus lobata HOM05D007550 ORTHO05D009474 1.1e-28 130.2 95 64.2
TAR626G1551 Trochodendron aralioides HOM05D007550 ORTHO05D009474 1.1e-28 130.2 88 67.0
FAN16G0277 Fragaria x ananassa HOM05D007550 ORTHO05D009474 1.5e-28 129.8 98 64.3
CDE06G2160 Ceratophyllum demersum HOM05D007550 ORTHO05D009474 1.9e-28 129.4 90 66.7
THA.LOC104817699 Tarenaya hassleriana HOM05D007550 ORTHO05D009474 1.9e-28 129.4 98 62.2
Atru.chr2.3607 Acer truncatum HOM05D007550 ORTHO05D009474 3.2e-28 128.6 77 70.1
CiPaw.12G135900 Carya illinoinensis HOM05D007550 ORTHO05D009474 3.2e-28 128.6 97 64.9
Medtr5g094600 Medicago truncatula HOM05D007550 ORTHO05D009474 3.2e-28 128.6 89 65.2
Nn1g07439 Nelumbo nucifera HOM05D007550 ORTHO05D009474 4.2e-28 128.3 88 65.9
Psat2g008720 Pisum sativum HOM05D007550 ORTHO05D009474 4.2e-28 128.3 115 54.8
Duzib213G0332 Durio zibethinus HOM05D007550 ORTHO05D009474 7.2e-28 127.5 97 59.8
ECA240G1453 Erigeron canadensis HOM05D007550 ORTHO05D009474 7.2e-28 127.5 88 69.3
Actinidia39070 Actinidia chinensis HOM05D007550 ORTHO05D009474 9.4e-28 127.1 77 74.0
MD11G1204800 Malus domestica HOM05D007550 ORTHO05D009474 9.4e-28 127.1 101 60.4
MELO3C014132.2 Cucumis melo HOM05D007550 ORTHO05D009474 1.2e-27 126.7 95 61.1
Thecc.07G022400 Theobroma cacao HOM05D007550 ORTHO05D009474 1.2e-27 126.7 117 51.3
FvH4_3g24050 Fragaria vesca HOM05D007550 ORTHO05D009474 1.6e-27 126.3 108 59.3
Gorai.002G096500 Gossypium raimondii HOM05D007550 ORTHO05D009474 1.6e-27 126.3 115 49.6
LjContig00272g0022958 Lotus japonicus HOM05D007550 ORTHO05D009474 1.6e-27 126.3 89 70.8
Zm00001eb370450 Zea mays HOM05D007550 ORTHO05D009474 2.1e-27 125.9 86 68.6
ATR1149G080 Amborella trichopoda HOM05D007550 ORTHO05D009474 2.7e-27 125.6 98 60.2
FAN11G2859 Fragaria x ananassa HOM05D007550 ORTHO05D009474 2.7e-27 125.6 87 67.8
A10p12800 Brassica napus HOM05D007550 ORTHO05D009474 4.7e-27 124.8 99 60.6
BraA10t43373Z Brassica rapa HOM05D007550 ORTHO05D009474 4.7e-27 124.8 99 60.6
RcHm_v2.0_Chr5g0042631 Rosa chinensis HOM05D007550 ORTHO05D009474 4.7e-27 124.8 77 71.4
CsaV3_3G004390 Cucumis sativus L. HOM05D007550 ORTHO05D009474 6.1e-27 124.4 95 60.0
Gohir.A01G087300 Gossypium hirsutum HOM05D007550 ORTHO05D009474 6.1e-27 124.4 115 49.6
HanXRQChr13g0408011 Helianthus annuus HOM05D007550 ORTHO05D009474 8.0e-27 124.0 79 73.4
Cc05_g14670 Coffea canephora HOM05D007550 ORTHO05D009474 1.0e-26 123.6 93 65.6
Hma1.2p1_0036F.1_g022730 Hydrangea macrophylla HOM05D007550 ORTHO05D009474 1.0e-26 123.6 77 72.7
Lalb_Chr17g0348791 Lupinus albus HOM05D007550 ORTHO05D009474 1.0e-26 123.6 92 62.0
Os01g0762300 Oryza sativa ssp. japonica HOM05D007550 ORTHO05D009474 1.8e-26 122.9 71 76.1
Aa31LG3G11520 Aethionema arabicum HOM05D007550 ORTHO05D009474 2.3e-26 122.5 109 54.1
AL8G31140 Arabidopsis lyrata HOM05D007550 ORTHO05D009474 4.0e-26 121.7 100 56.0
Thhalv10014968m.g Eutrema salsugineum HOM05D007550 ORTHO05D009474 5.2e-26 121.3 115 53.9
Phvul.008G275600 Phaseolus vulgaris HOM05D007550 ORTHO05D009474 5.2e-26 121.3 105 58.1
MSTRG.6984 Avicennia marina HOM05D007550 ORTHO05D009474 6.7e-26 120.9 106 60.4
Sed0001315 Sechium edule HOM05D007550 ORTHO05D009474 6.7e-26 120.9 77 68.8
AT5G55570 Arabidopsis thaliana HOM05D007550 ORTHO05D009474 8.8e-26 120.6 116 51.7
BolC9t57498H Brassica oleracea HOM05D007550 ORTHO05D009474 2.0e-25 119.4 99 58.6
DCAR_022604 Daucus carota HOM05D007550 ORTHO05D009474 2.0e-25 119.4 126 48.4
Sabra02G0058600 Salix brachista HOM05D007550 ORTHO05D009474 2.0e-25 119.4 99 57.6
C09p46340 Brassica napus HOM05D007550 ORTHO05D009474 2.6e-25 119.0 99 58.6
CARHR268880 Cardamine hirsuta HOM05D007550 ORTHO05D009474 7.5e-25 117.5 99 56.6
HPP92_028367 Vanilla planifolia HOM05D007550 ORTHO05D009474 1.7e-24 116.3 78 67.9
COL.COLO4_09786 Corchorus olitorius HOM05D007550 ORTHO05D009474 3.7e-24 115.2 130 46.2
Mapoly0128s0022 Marchantia polymorpha HOM05D007550 ORTHO05D009474 3.7e-24 115.2 105 52.4
AagrBONN_evm.TU.Sc2ySwM_344.2781 Anthoceros agrestis HOM05D007550 ORTHO05D009474 7.0e-23 110.9 119 46.2
Oeu005969.1 Olea europaea HOM05D007550 ORTHO05D009474 1.3e-21 106.7 89 64.0
arahy.Tifrunner.gnm1.ann1.R7ZLS4 Arachis hypogaea HOM05D007550 ORTHO05D009474 1.7e-21 106.3 111 49.5
CBR_g30607 Chara braunii HOM05D007550 ORTHO05D009474 2.9e-21 105.5 84 54.8
arahy.Tifrunner.gnm1.ann1.S0MYI4 Arachis hypogaea HOM05D007550 ORTHO05D009474 3.8e-21 105.1 115 47.0
Aqoxy4G02213 Aquilegia oxysepala HOM05D007550 ORTHO05D009474 1.9e-20 102.8 109 50.5
BcaB08g35917 Brassica carinata HOM05D007550 ORTHO05D009474 3.2e-20 102.1 98 53.1
PGR031G0516 Punica granatum HOM05D007550 ORTHO05D009474 1.2e-19 100.1 89 58.4
Glyma.14G015900 Glycine max HOM05D007550 ORTHO05D009474 2.7e-19 99.0 87 56.3
Potri.011G085501 Populus trichocarpa HOM05D007550 ORTHO05D009474 8.0e-19 97.4 62 69.4
VMungo0647G1572 Vigna mungo HOM05D007550 ORTHO05D009474 1.0e-18 97.1 74 63.5
Ciclev10009869m.g Citrus clementina HOM05D007550 ORTHO05D009474 1.8e-18 96.3 81 55.6
Carub.0008s1594 Capsella rubella HOM05D007550 ORTHO05D009474 3.0e-18 95.5 86 54.7
Cfa020230 Carpinus fangiana HOM05D007550 ORTHO05D009474 3.0e-18 95.5 79 58.2
ClCG10G004590 Citrullus lanatus HOM05D007550 ORTHO05D009474 4.0e-18 95.1 112 45.5
FAN25G3253 Fragaria x ananassa HOM05D007550 ORTHO05D009474 4.0e-18 95.1 76 60.5
FAN21G0016 Fragaria x ananassa HOM05D007550 ORTHO05D009474 6.8e-18 94.4 80 58.8
FAN25G1734 Fragaria x ananassa HOM05D007550 ORTHO05D009474 8.8e-18 94.0 65 66.2
PSO541G5298 Papaver somniferum HOM05D007550 ORTHO05D009474 1.2e-17 93.6 92 51.1
PSO675G9283 Papaver somniferum HOM05D007550 ORTHO05D009474 1.2e-17 93.6 92 51.1
Gohir.D01G073600 Gossypium hirsutum HOM05D007550 ORTHO05D009474 4.4e-17 91.7 100 43.0
EL10Ac4g07615 Beta vulgaris HOM05D007550 ORTHO05D009474 1.3e-16 90.1 116 40.5
unitig_899.g15275 Utricularia gibba HOM05D007550 ORTHO05D009474 2.2e-16 89.4 109 46.8
Hma1.2p1_0036F.1_g022720 Hydrangea macrophylla HOM05D007550 ORTHO05D009474 6.3e-16 87.8 101 47.5
Cre03.g145567 Chlamydomonas reinhardtii HOM05D007550 ORTHO05D009474 2.7e-14 82.4 78 48.7
CANSAT56G0742 Cannabis sativa HOM05D007550 ORTHO05D009474 1.0e-13 80.5 77 57.1
PRCOL_00004706 Prasinoderma coloniale HOM05D007550 ORTHO05D009474 3.8e-13 78.6 72 56.9
Pp3c18_5680 Physcomitrium patens HOM05D007550 ORTHO05D009474 6.5e-13 77.8 67 56.7
SGA_v2.0_scaffold168G38530 Striga asiatica HOM05D007550 ORTHO05D009474 4.2e-12 75.1 59 61.0
vmacro09669 Vaccinium macrocarpon HOM05D007550 ORTHO05D009474 1.4e-07 60.1 56 57.1
MBI16_g11565_MAGBIO Magnolia biondii HOM05D007550 ORTHO05D009474 7.0e-07 57.8 52 65.4
Ah.06g181190 Amaranthus hybridus HOM05D000063 ORTHO05D000906 1.6e-06 56.6 86 39.5
Prupe.4G233900 Prunus persica HOM05D007550 ORTHO05D009474 5.9e-06 54.7 66 50.0


User provided reference genes

Program Settings