Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen12g006540 Solanum pennellii HOM05D003812 ORTHO05D004393 0.0e+00 1187.9 626 100.0
Solyc12g011180.3 Solanum lycopersicum HOM05D003812 ORTHO05D004393 1.4e-265 919.5 557 90.3
CAN.G164.18 Capsicum annuum HOM05D003812 ORTHO05D004393 6.2e-253 877.5 634 75.9
Nitab4.5_0010162g0010 Nicotiana tabacum HOM05D003812 ORTHO05D004393 4.8e-205 718.4 517 72.3
Nitab4.5_0003520g0020 Nicotiana tabacum HOM05D003812 ORTHO05D004393 6.8e-183 644.8 522 66.5
Peaxi162Scf00463g00428 Petunia axillaris HOM05D003812 ORTHO05D004393 2.4e-180 636.3 595 59.5
MSTRG.26255 Avicennia marina HOM05D003812 ORTHO05D004393 4.1e-172 609.0 641 53.5
GSVIVG01038248001 Vitis vinifera HOM05D003812 ORTHO05D004393 3.1e-167 592.8 641 52.0
CSS0041441 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 4.0e-167 592.4 635 55.3
Actinidia18400 Actinidia chinensis HOM05D003812 ORTHO05D004393 1.2e-166 590.9 630 52.2
Migut.K00296 Erythranthe guttata HOM05D003812 ORTHO05D004393 1.7e-165 587.0 646 57.0
Thecc.03G204100 Theobroma cacao HOM05D003812 ORTHO05D004393 2.3e-162 576.6 626 50.5
COL.COLO4_16818 Corchorus olitorius HOM05D003812 ORTHO05D004393 1.1e-161 574.3 684 51.5
Lsat_1_v5_gn_8_131861 Lactuca sativa HOM05D003812 ORTHO05D004393 2.3e-159 566.6 626 52.2
TWI63G1503 Tripterygium wilfordii HOM05D003812 ORTHO05D004393 7.5e-158 561.6 636 50.5
MD15G1143400 Malus domestica HOM05D003812 ORTHO05D004393 1.7e-157 560.5 635 47.4
Gorai.004G122600 Gossypium raimondii HOM05D003812 ORTHO05D004393 7.1e-156 555.1 628 49.8
Gohir.D08G113808 Gossypium hirsutum HOM05D003812 ORTHO05D004393 1.6e-155 553.9 629 50.2
Cpa.g.sc151.5 Carica papaya HOM05D003812 ORTHO05D004393 1.0e-154 551.2 627 49.0
QL10p064313 Quercus lobata HOM05D003812 ORTHO05D004393 3.9e-154 549.3 629 48.2
Prupe.7G062100 Prunus persica HOM05D003812 ORTHO05D004393 1.9e-153 547.0 629 48.0
Cfa008512 Carpinus fangiana HOM05D003812 ORTHO05D004393 4.3e-153 545.8 631 47.4
VMungo1215G0546 Vigna mungo HOM05D003812 ORTHO05D004393 8.1e-152 541.6 628 47.6
Ciclev10027241m.g Citrus clementina HOM05D003812 ORTHO05D004393 2.0e-150 537.0 631 50.6
TAR362G0390 Trochodendron aralioides HOM05D003812 ORTHO05D004393 2.6e-150 536.6 653 50.5
Gohir.A08G102525 Gossypium hirsutum HOM05D003812 ORTHO05D004393 5.8e-150 535.4 628 47.5
Lj2g0003816 Lotus japonicus HOM05D003812 ORTHO05D004393 6.4e-149 531.9 636 48.0
Lj2g0024194 Lotus japonicus HOM05D003812 ORTHO05D004393 8.4e-149 531.6 634 47.0
arahy.Tifrunner.gnm1.ann1.SFVM41 Arachis hypogaea HOM05D003812 ORTHO05D004393 1.6e-147 527.3 622 46.9
Manes.01G010200 Manihot esculenta HOM05D003812 ORTHO05D004393 2.1e-147 526.9 632 51.3
Atru.chr3.1997_Atru.chr3.1998 Acer truncatum HOM05D003812 ORTHO05D004393 6.0e-147 525.4 630 47.3
PSO170G6215 Papaver somniferum HOM05D003812 ORTHO05D004393 7.8e-147 525.0 646 50.8
arahy.Tifrunner.gnm1.ann1.U9V8RX Arachis hypogaea HOM05D003812 ORTHO05D004393 3.0e-146 523.1 628 46.7
SGA_v2.0_scaffold12G06029 Striga asiatica HOM05D003812 ORTHO05D004393 2.5e-145 520.0 667 48.4
DCAR_023841 Daucus carota HOM05D003812 ORTHO05D004393 3.3e-145 519.6 650 49.7
Rhsim09G0003800 Rhododendron simsii HOM05D003812 ORTHO05D004393 2.8e-144 516.5 691 44.1
Aqoxy4G02750 Aquilegia oxysepala HOM05D003812 ORTHO05D004393 5.2e-143 512.3 660 45.6
Glyma.11G082800 Glycine max HOM05D003812 ORTHO05D004393 4.4e-142 509.2 630 48.4
Phvul.002G113100 Phaseolus vulgaris HOM05D003812 ORTHO05D004393 5.8e-142 508.8 623 46.2
Aqoxy7G02949 Aquilegia oxysepala HOM05D003812 ORTHO05D004393 1.7e-141 507.3 658 47.9
HanXRQChr05g0135721 Helianthus annuus HOM05D003812 ORTHO05D004393 1.7e-141 507.3 626 47.6
Sc25g0002340 Simmondsia chinensis HOM05D003812 ORTHO05D004393 1.7e-141 507.3 508 52.8
FvH4_4g37371 Fragaria vesca HOM05D003812 ORTHO05D004393 1.2e-139 501.1 631 44.8
ECA246G4500 Erigeron canadensis HOM05D003812 ORTHO05D004393 2.1e-139 500.4 627 49.1
SalBow5G1511 Salvia bowleyana HOM05D003812 ORTHO05D004393 2.1e-139 500.4 644 48.6
SalBow5G1547 Salvia bowleyana HOM05D003812 ORTHO05D004393 2.7e-139 500.0 646 48.8
TPR.G23263 Trifolium pratense HOM05D003812 ORTHO05D004393 3.5e-139 499.6 642 45.2
CANSAT54G2113 Cannabis sativa HOM05D003812 ORTHO05D004393 1.0e-138 498.0 631 47.9
Medtr7g059160 Medicago truncatula HOM05D003812 ORTHO05D004393 1.7e-138 497.3 628 46.8
Ca_17095_v3 Cicer arietinum L. HOM05D003812 ORTHO05D004393 8.7e-138 495.0 626 46.8
TPR.G11261 Trifolium pratense HOM05D003812 ORTHO05D004393 4.3e-137 492.7 627 46.1
arahy.Tifrunner.gnm1.ann1.B1HR4A Arachis hypogaea HOM05D003812 ORTHO05D004393 2.1e-136 490.3 647 48.1
arahy.Tifrunner.gnm1.ann1.CNXN93 Arachis hypogaea HOM05D003812 ORTHO05D004393 2.1e-136 490.3 647 48.1
PGR142G2470 Punica granatum HOM05D003812 ORTHO05D004393 1.2e-134 484.6 629 49.0
Nitab4.5_0000160g0140 Nicotiana tabacum HOM05D003812 ORTHO05D004393 2.0e-134 483.8 385 68.6
THA.LOC104814949 Tarenaya hassleriana HOM05D003812 ORTHO05D004393 1.3e-133 481.1 629 44.8
Psat3g143480 Pisum sativum HOM05D003812 ORTHO05D004393 1.7e-133 480.7 628 45.9
FvH4_1g00230 Fragaria vesca HOM05D003812 ORTHO05D004393 1.9e-132 477.2 627 43.7
Sp2g22880 Schrenkiella parvula HOM05D003812 ORTHO05D004393 1.2e-131 474.6 618 46.8
ClCG09G014660 Citrullus lanatus HOM05D003812 ORTHO05D004393 2.1e-131 473.8 629 44.4
FAN26G2119 Fragaria x ananassa HOM05D003812 ORTHO05D004393 6.0e-131 472.2 633 43.6
Sabra17G0008000 Salix brachista HOM05D003812 ORTHO05D004393 3.0e-130 469.9 662 43.8
Potri.017G007200 Populus trichocarpa HOM05D003812 ORTHO05D004393 5.1e-130 469.2 632 42.4
AT5G24450 Arabidopsis thaliana HOM05D003812 ORTHO05D004393 1.1e-129 468.0 630 42.5
CARHR188960 Cardamine hirsuta HOM05D003812 ORTHO05D004393 1.1e-129 468.0 618 43.9
Lj4C178G3 Lonicera japonica HOM05D003812 ORTHO05D004393 2.5e-129 466.8 667 43.3
BcaB07g29910 Brassica carinata HOM05D003812 ORTHO05D004393 5.6e-129 465.7 632 43.2
Carub.0006s2228 Capsella rubella HOM05D003812 ORTHO05D004393 7.4e-129 465.3 627 42.4
AL6G36030 Arabidopsis lyrata HOM05D003812 ORTHO05D004393 1.6e-128 464.2 621 44.9
AT3G49410 Arabidopsis thaliana HOM05D003812 ORTHO05D004393 3.6e-128 463.0 632 42.1
BolC2t12085H Brassica oleracea HOM05D003812 ORTHO05D004393 8.1e-128 461.8 635 48.0
CsaV3_5G037130 Cucumis sativus L. HOM05D003812 ORTHO05D004393 1.8e-127 460.7 632 43.2
BolC1t03017H Brassica oleracea HOM05D003812 ORTHO05D004393 4.0e-127 459.5 634 42.0
A02p40330 Brassica napus HOM05D003812 ORTHO05D004393 9.0e-127 458.4 632 47.5
Sed0027703 Sechium edule HOM05D003812 ORTHO05D004393 1.2e-126 458.0 617 43.9
BraA01t02385Z Brassica rapa HOM05D003812 ORTHO05D004393 1.5e-126 457.6 634 41.5
MELO3C026683.2 Cucumis melo HOM05D003812 ORTHO05D004393 1.5e-126 457.6 635 43.8
A01p24730 Brassica napus HOM05D003812 ORTHO05D004393 2.0e-126 457.2 634 41.3
AL5G29170 Arabidopsis lyrata HOM05D003812 ORTHO05D004393 2.6e-126 456.8 632 43.0
CARHR158380 Cardamine hirsuta HOM05D003812 ORTHO05D004393 5.8e-126 455.7 635 40.8
Thhalv10003925m.g Eutrema salsugineum HOM05D003812 ORTHO05D004393 9.9e-126 454.9 618 45.0
Sp5g12660 Schrenkiella parvula HOM05D003812 ORTHO05D004393 2.2e-125 453.8 633 43.1
BraA02t09001Z Brassica rapa HOM05D003812 ORTHO05D004393 8.4e-125 451.8 629 48.0
Thhalv10010256m.g Eutrema salsugineum HOM05D003812 ORTHO05D004393 8.4e-125 451.8 629 43.9
C02p60290 Brassica napus HOM05D003812 ORTHO05D004393 1.1e-124 451.4 624 47.6
Aa31LG11G3700 Aethionema arabicum HOM05D003812 ORTHO05D004393 2.4e-124 450.3 621 45.2
FAN07G2723 Fragaria x ananassa HOM05D003812 ORTHO05D004393 7.1e-124 448.7 517 48.2
C01p30850 Brassica napus HOM05D003812 ORTHO05D004393 7.9e-123 445.3 632 41.0
BcaC03g17974 Brassica carinata HOM05D003812 ORTHO05D004393 7.4e-121 438.7 635 46.6
FAN07G0162 Fragaria x ananassa HOM05D004444 ORTHO05D005246 2.8e-120 436.8 517 46.6
CiPaw.01G201400 Carya illinoinensis HOM05D003812 ORTHO05D004393 5.8e-118 429.1 465 51.0
Nn1g08169 Nelumbo nucifera HOM05D003812 ORTHO05D004393 7.6e-118 428.7 450 50.4
Potri.007G145000 Populus trichocarpa HOM05D003812 ORTHO05D004393 1.9e-113 414.1 517 44.9
unitig_37.g12590 Utricularia gibba HOM05D003812 ORTHO05D004393 3.7e-112 409.8 630 40.2
vmacro06691 Vaccinium macrocarpon HOM05D003812 ORTHO05D004393 1.1e-111 408.3 506 47.2
BcaC03g17970 Brassica carinata HOM05D003812 ORTHO05D004393 2.4e-111 407.1 624 45.0
BcaC09g49951 Brassica carinata HOM05D003812 ORTHO05D004393 3.1e-111 406.8 627 39.2
FAN17G2490 Fragaria x ananassa HOM05D004444 ORTHO05D005246 9.0e-111 405.2 517 44.3
BcaB05g23118 Brassica carinata HOM05D003812 ORTHO05D004393 1.0e-109 401.7 629 39.0
Cc00_g24630 Coffea canephora HOM05D003812 ORTHO05D004393 1.8e-103 380.9 379 56.2
EL10Ac3g06164 Beta vulgaris HOM05D003812 ORTHO05D004393 9.4e-100 368.6 624 39.9
HPP92_018576 Vanilla planifolia HOM05D003812 ORTHO05D004393 6.9e-95 352.4 644 39.8
Aa31LG4G17960 Aethionema arabicum HOM05D003812 ORTHO05D004393 1.2e-91 341.7 632 37.0
AUR62023711 Chenopodium quinoa HOM05D003812 ORTHO05D004393 2.7e-91 340.5 508 41.9
MBI16_g29049_MAGBIO Magnolia biondii HOM05D003812 ORTHO05D004393 4.1e-87 326.6 488 42.2
CDE05G0093 Ceratophyllum demersum HOM05D003812 ORTHO05D004393 7.0e-87 325.9 687 37.3
BcaB07g31049 Brassica carinata HOM05D003812 ORTHO05D004393 2.6e-86 323.9 377 46.7
SMO367G0920 Selaginella moellendorffii HOM05D003812 ORTHO05D004393 2.9e-85 320.5 495 38.8
Mapoly0019s0182 Marchantia polymorpha HOM05D003812 ORTHO05D004393 6.5e-85 319.3 483 38.3
Zm00001eb420200 Zea mays HOM05D003812 ORTHO05D004393 5.2e-82 309.7 629 33.5
RcHm_v2.0_Chr2g0084521 Rosa chinensis HOM05D003812 ORTHO05D004393 2.0e-81 307.8 342 47.4
Pp3c16_3240 Physcomitrium patens HOM05D003812 ORTHO05D004393 1.6e-78 298.1 486 36.2
FAN23G1808 Fragaria x ananassa HOM05D003812 ORTHO05D004393 2.2e-77 294.3 356 45.8
Hma1.2p1_0381F.1_g140050 Hydrangea macrophylla HOM05D003812 ORTHO05D004393 4.2e-76 290.0 265 56.6
AUR62002481 Chenopodium quinoa HOM05D003812 ORTHO05D004393 2.8e-72 277.3 344 45.6
AagrBONN_evm.TU.Sc2ySwM_344.3654 Anthoceros agrestis HOM05D003812 ORTHO05D004393 4.8e-72 276.6 508 35.6
Nitab4.5_0001168g0120 Nicotiana tabacum HOM05D003812 ORTHO05D004393 1.2e-70 271.9 582 35.2
TAR636G0947 Trochodendron aralioides HOM05D003812 ORTHO05D004393 1.5e-68 265.0 272 55.1
Lalb_Chr05g0212041 Lupinus albus HOM05D003812 ORTHO05D004393 1.9e-68 264.6 265 53.6
Ah.13g073180 Amaranthus hybridus HOM05D003812 ORTHO05D004393 5.5e-68 263.1 244 52.9
Lalb_Chr05g0212031 Lupinus albus HOM05D003812 ORTHO05D004393 1.6e-67 261.5 316 47.5
Sc13g0007550 Simmondsia chinensis HOM05D003812 ORTHO05D004393 4.9e-64 250.0 276 49.3
Haze_11132 Corylus avellana HOM05D003812 ORTHO05D004393 1.0e-61 242.3 343 41.7
BolC2t12088H Brassica oleracea HOM05D003812 ORTHO05D004393 1.1e-60 238.8 355 41.1
Cc06_g19250 Coffea canephora HOM05D003812 ORTHO05D004393 2.5e-60 237.7 264 53.8
BcaB01g00718 Brassica carinata HOM05D003812 ORTHO05D004393 2.6e-57 227.6 348 40.8
RcHm_v2.0_Chr2g0084531 Rosa chinensis HOM05D003812 ORTHO05D004393 4.4e-57 226.9 293 45.4
Carub.0005s1566 Capsella rubella HOM05D003812 ORTHO05D004393 7.0e-55 219.5 265 45.3
Hund12300 Selenicereus undatus HOM05D003812 ORTHO05D004393 9.2e-55 219.2 246 50.4
Carub.0005s1565 Capsella rubella HOM05D003812 ORTHO05D004393 4.3e-52 210.3 288 40.6
PGSC0003DMG400007789 Solanum tuberosum HOM05D003812 ORTHO05D004393 5.6e-52 209.9 158 93.7
Hma1.2p1_0381F.1_g140060 Hydrangea macrophylla HOM05D003812 ORTHO05D004393 7.3e-52 209.5 170 59.4
Oeu022463.3 Olea europaea HOM05D003812 ORTHO05D004393 6.2e-51 206.5 392 41.1
Cc06_g19240 Coffea canephora HOM05D003812 ORTHO05D004393 1.7e-48 198.4 136 68.4
Oeu064436.1 Olea europaea HOM05D003812 ORTHO05D004393 3.7e-48 197.2 186 56.5
CSS0023461 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 4.3e-44 183.7 186 52.7
CSS0001518 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 3.6e-43 180.6 184 54.9
CSS0048962 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 4.7e-43 180.3 186 52.2
CSS0002491 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 6.8e-42 176.4 184 53.8
CSS0006626 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 6.8e-42 176.4 184 53.8
CSS0008525 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 6.8e-42 176.4 184 53.8
ATR0580G406 Amborella trichopoda HOM05D003812 ORTHO05D004393 4.4e-41 173.7 251 43.0
CSS0030669 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 4.4e-41 173.7 180 51.1
HanXRQChr17g0553321 Helianthus annuus HOM05D003812 ORTHO05D004393 3.7e-40 170.6 241 48.5
TAR636G0254 Trochodendron aralioides HOM05D003812 ORTHO05D004393 4.9e-40 170.2 265 47.5
VMungo0251G1870 Vigna mungo HOM05D000140 ORTHO05D004393 1.3e-37 162.2 207 46.4
Ah.13g073190 Amaranthus hybridus HOM05D003812 ORTHO05D004393 8.9e-34 149.4 181 47.0
CBR_g26464 Chara braunii HOM05D003812 ORTHO05D004393 1.1e-31 142.5 684 22.8
SEGI_23375 Sequoiadendron giganteum HOM05D003812 ORTHO05D004393 3.5e-30 137.5 190 43.7
CSS0036967 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 2.3e-29 134.8 181 45.3
VMungo1268G0001 Vigna mungo HOM05D003812 ORTHO05D004393 3.3e-28 131.0 213 38.5
Sc13g0007560 Simmondsia chinensis HOM05D003812 ORTHO05D004393 2.1e-27 128.3 106 58.5
Hund12301 Selenicereus undatus HOM05D003812 ORTHO05D004393 9.0e-26 122.9 225 45.8
SHI01261 Sapria himalayana HOM05D003812 ORTHO05D004393 2.6e-25 121.3 86 61.6
arahy.Tifrunner.gnm1.ann1.NBB910 Arachis hypogaea HOM05D003812 ORTHO05D004393 7.8e-22 109.8 102 52.0
arahy.Tifrunner.gnm1.ann1.C22IND Arachis hypogaea HOM05D003812 ORTHO05D004393 1.9e-20 105.1 97 51.5
arahy.Tifrunner.gnm1.ann1.WBRQ5K Arachis hypogaea HOM05D003812 ORTHO05D004393 4.3e-20 104.0 102 50.0
ATR0580G030 Amborella trichopoda HOM05D003812 ORTHO05D004393 3.6e-19 100.9 248 29.0
arahy.Tifrunner.gnm1.ann1.05VQ85 Arachis hypogaea HOM05D003812 ORTHO05D004393 1.1e-18 99.4 139 40.3
Haze_11133 Corylus avellana HOM05D003812 ORTHO05D004393 1.5e-17 95.5 148 39.2
Os01g0528000 Oryza sativa ssp. japonica HOM05D003812 ORTHO05D004393 3.4e-17 94.4 84 53.6
Nn1g08161 Nelumbo nucifera HOM05D003812 ORTHO05D004393 7.6e-17 93.2 192 47.9
Cc06_g19280 Coffea canephora HOM05D003812 ORTHO05D004393 5.6e-12 77.0 77 51.9
Peaxi162Scf00057g02413 Petunia axillaris HOM05D003812 ORTHO05D004393 5.6e-12 77.0 97 71.1
arahy.Tifrunner.gnm1.ann1.SF8VIF Arachis hypogaea HOM05D003812 ORTHO05D004393 7.4e-12 76.6 79 48.1
arahy.Tifrunner.gnm1.ann1.8MB3N8 Arachis hypogaea HOM05D003812 ORTHO05D004393 1.3e-11 75.9 82 46.3
SEGI_01468 Sequoiadendron giganteum HOM05D003812 ORTHO05D004393 2.4e-10 71.6 69 49.3
Hma1.2p1_0381F.1_g140070 Hydrangea macrophylla HOM05D003812 ORTHO05D004393 3.1e-10 71.2 173 31.8
vmacro06690 Vaccinium macrocarpon HOM05D003812 ORTHO05D004393 3.1e-10 71.2 45 68.9
SEGI_03594 Sequoiadendron giganteum HOM05D003812 ORTHO05D004393 1.2e-09 69.3 45 71.1
Hund12275 Selenicereus undatus HOM05D003812 ORTHO05D004393 5.8e-09 67.0 192 41.7
MBI16_g46635_MAGBIO Magnolia biondii HOM05D000963 ORTHO05D005131 7.6e-09 66.6 276 29.0
BcaB07g31053 Brassica carinata HOM05D003812 ORTHO05D004393 4.2e-07 60.8 57 52.6
FAN20G1426 Fragaria x ananassa HOM05D003812 ORTHO05D004393 5.5e-07 60.5 130 37.7
vmacro06692 Vaccinium macrocarpon HOM05D003812 ORTHO05D004393 7.1e-07 60.1 79 41.8
Glyma.01G161051 Glycine max HOM05D003812 ORTHO05D004393 1.6e-06 58.9 60 46.7


User provided reference genes

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