Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen12g006010 Solanum pennellii HOM05D002316 ORTHO05D002280 6.8e-112 407.5 234 100.0
Solyc12g014220.3 Solanum lycopersicum HOM05D002316 ORTHO05D002280 8.6e-107 390.6 234 95.7
PGSC0003DMG400015334 Solanum tuberosum HOM05D002316 ORTHO05D002280 6.6e-99 364.4 234 91.5
CAN.G292.5 Capsicum annuum HOM05D002316 ORTHO05D002280 1.9e-90 336.3 226 84.5
Peaxi162Scf00934g00148 Petunia axillaris HOM05D002316 ORTHO05D002280 3.2e-85 318.9 233 78.5
Nitab4.5_0000035g0100 Nicotiana tabacum HOM05D002316 ORTHO05D002280 2.1e-81 306.2 243 75.3
Nitab4.5_0005440g0080 Nicotiana tabacum HOM05D002316 ORTHO05D002280 3.4e-79 298.9 217 80.6
Dinv14972 Davidia involucrata HOM05D002316 ORTHO05D002280 1.5e-58 230.3 220 63.6
Oeu051116.1 Olea europaea HOM05D002316 ORTHO05D002280 1.5e-50 203.8 200 58.0
GSVIVG01014224001 Vitis vinifera HOM05D002316 ORTHO05D002280 6.3e-49 198.4 207 58.0
Migut.H01980 Erythranthe guttata HOM05D002316 ORTHO05D002280 4.2e-45 185.7 202 54.5
MSTRG.14222 Avicennia marina HOM05D002316 ORTHO05D002280 9.4e-45 184.5 199 55.8
Oeu061346.1 Olea europaea HOM05D002316 ORTHO05D002280 2.7e-44 183.0 201 57.7
Cc05_g11320 Coffea canephora HOM05D002316 ORTHO05D002280 4.6e-44 182.2 223 54.7
ECA234G4357 Erigeron canadensis HOM05D002316 ORTHO05D002280 3.0e-43 179.5 204 52.9
DCAR_017163 Daucus carota HOM05D002316 ORTHO05D002280 5.1e-43 178.7 216 48.1
CSS0043472 Camellia sinensis var. sinensis HOM05D002316 ORTHO05D002280 8.8e-43 177.9 220 54.1
Cpa.g.sc131.59 Carica papaya HOM05D002316 ORTHO05D002280 2.2e-41 173.3 203 49.8
Nn1g09090 Nelumbo nucifera HOM05D002316 ORTHO05D002280 8.2e-41 171.4 210 49.5
vmacro17430 Vaccinium macrocarpon HOM05D002316 ORTHO05D002280 8.2e-41 171.4 198 50.5
Manes.02G100500 Manihot esculenta HOM05D002316 ORTHO05D002280 5.3e-40 168.7 222 49.1
Gohir.D13G153100 Gossypium hirsutum HOM05D002316 ORTHO05D002280 2.9e-38 162.9 219 47.5
Gorai.013G173000 Gossypium raimondii HOM05D002316 ORTHO05D002280 2.9e-38 162.9 219 47.5
Lj8A150T53 Lonicera japonica HOM05D002316 ORTHO05D002280 6.5e-38 161.8 146 65.1
Eucgr.F03256 Eucalyptus grandis HOM05D002316 ORTHO05D002280 1.2e-36 157.5 230 48.7
MBI06_g25991_MAGBIO Magnolia biondii HOM05D002316 ORTHO05D002280 1.6e-36 157.1 228 46.5
Rhsim06G0205700 Rhododendron simsii HOM05D002316 ORTHO05D002280 1.0e-35 154.5 198 47.5
vmacro11915 Vaccinium macrocarpon HOM05D002316 ORTHO05D002280 1.8e-35 153.7 204 48.5
HanXRQChr12g0373471 Helianthus annuus HOM05D002316 ORTHO05D002280 5.2e-35 152.1 204 46.6
Gohir.A13G148550 Gossypium hirsutum HOM05D002316 ORTHO05D002280 6.7e-35 151.8 219 46.1
Aa31LG10G1890 Aethionema arabicum HOM05D002316 ORTHO05D002280 1.7e-33 147.1 206 45.6
SGA_v2.0_scaffold130G34313 Striga asiatica HOM05D002316 ORTHO05D002280 1.1e-32 144.4 201 47.3
TAR624G0302 Trochodendron aralioides HOM05D002316 ORTHO05D002280 2.4e-32 143.3 223 47.1
PGR031G2525 Punica granatum HOM05D002316 ORTHO05D002280 3.5e-31 139.4 221 43.9
FAN21G3617 Fragaria x ananassa HOM05D002316 ORTHO05D002280 4.5e-31 139.0 212 44.8
Potri.011G112300 Populus trichocarpa HOM05D002316 ORTHO05D002280 5.9e-31 138.7 223 44.4
Prupe.4G170000 Prunus persica HOM05D002316 ORTHO05D002280 7.7e-31 138.3 217 44.7
PSO782G0144 Papaver somniferum HOM05D002478 ORTHO05D002280 2.2e-30 136.7 216 43.1
MD11G1260000 Malus domestica HOM05D002316 ORTHO05D002280 3.8e-30 136.0 212 42.9
Haze_09346 Corylus avellana HOM05D002316 ORTHO05D002280 5.0e-30 135.6 255 41.6
PSO063G2003 Papaver somniferum HOM05D002478 ORTHO05D002280 8.5e-30 134.8 215 42.3
CANSAT35G1069 Cannabis sativa HOM05D002316 ORTHO05D002280 1.5e-29 134.0 212 41.0
AUR62038474 Chenopodium quinoa HOM05D002316 ORTHO05D002280 2.5e-29 133.3 219 44.3
AL1G61670 Arabidopsis lyrata HOM05D002316 ORTHO05D002280 5.5e-29 132.1 226 40.7
Duzib213G0315 Durio zibethinus HOM05D002316 ORTHO05D002280 5.5e-29 132.1 219 46.6
Atru.chr2.2212 Acer truncatum HOM05D002316 ORTHO05D002280 7.2e-29 131.7 243 38.3
FvH4_3g18610 Fragaria vesca HOM05D002316 ORTHO05D002280 2.1e-28 130.2 212 42.9
FAN25G2366 Fragaria x ananassa HOM05D002316 ORTHO05D002280 2.1e-28 130.2 212 43.4
BcaC08g43517 Brassica carinata HOM05D002316 ORTHO05D002280 3.6e-28 129.4 204 44.1
BolC6t35981H Brassica oleracea HOM05D002316 ORTHO05D002280 3.6e-28 129.4 204 44.1
FAN16G1965 Fragaria x ananassa HOM05D002316 ORTHO05D002280 8.0e-28 128.3 211 42.2
EL10Ac4g08303 Beta vulgaris HOM05D002316 ORTHO05D002280 2.3e-27 126.7 209 45.5
C06p09030 Brassica napus HOM05D002316 ORTHO05D002280 2.3e-27 126.7 204 43.1
Thhalv10011596m.g Eutrema salsugineum HOM05D002316 ORTHO05D002280 3.0e-27 126.3 226 40.7
TWI38G1868 Tripterygium wilfordii HOM05D002316 ORTHO05D002280 4.0e-27 125.9 202 43.1
C03p91300 Brassica napus HOM05D002316 ORTHO05D002280 1.5e-26 124.0 226 39.4
Sabra16G0258200 Salix brachista HOM05D002316 ORTHO05D002280 2.0e-26 123.6 214 45.8
Ciclev10008352m.g Citrus clementina HOM05D002316 ORTHO05D002280 3.3e-26 122.9 205 43.9
BcaC01g01372 Brassica carinata HOM05D002316 ORTHO05D002280 5.7e-26 122.1 226 38.9
BolC3t21445H Brassica oleracea HOM05D002316 ORTHO05D002280 7.5e-26 121.7 226 39.4
QL08p026808 Quercus lobata HOM05D002316 ORTHO05D002280 7.5e-26 121.7 275 37.8
Sc03g0010430 Simmondsia chinensis HOM05D002316 ORTHO05D002280 9.7e-26 121.3 209 41.6
Lsat_1_v5_gn_5_127320 Lactuca sativa HOM05D000043 ORTHO05D009639 1.7e-25 120.6 111 58.6
BcaB04g17097 Brassica carinata HOM05D002316 ORTHO05D002280 2.8e-25 119.8 223 41.3
COL.COLO4_17596 Corchorus olitorius HOM05D002316 ORTHO05D002280 2.8e-25 119.8 211 39.3
CiPaw.11G162400 Carya illinoinensis HOM05D002316 ORTHO05D002280 3.7e-25 119.4 275 36.0
THA.LOC104810445 Tarenaya hassleriana HOM05D002316 ORTHO05D002280 3.7e-25 119.4 206 39.8
Thecc.07G106400 Theobroma cacao HOM05D002316 ORTHO05D002280 3.7e-25 119.4 172 45.9
MELO3C016104.2 Cucumis melo HOM05D002316 ORTHO05D002280 4.8e-25 119.0 217 41.0
unitig_699.g19234 Utricularia gibba HOM05D002316 ORTHO05D002280 4.8e-25 119.0 199 41.2
Hma1.2p1_0607F.1_g188170 Hydrangea macrophylla HOM05D002316 ORTHO05D002280 6.3e-25 118.6 131 55.7
RcHm_v2.0_Chr5g0031441 Rosa chinensis HOM05D002316 ORTHO05D002280 8.2e-25 118.2 211 40.8
SGA_v2.0_scaffold70G23709 Striga asiatica HOM05D002316 ORTHO05D002280 1.4e-24 117.5 158 49.4
CsaV3_4G008310 Cucumis sativus L. HOM05D002316 ORTHO05D002280 7.0e-24 115.2 212 40.1
ClCG07G010030 Citrullus lanatus HOM05D002316 ORTHO05D002280 9.1e-24 114.8 217 39.6
arahy.Tifrunner.gnm1.ann1.G0VLJ9 Arachis hypogaea HOM05D002316 ORTHO05D002280 1.6e-23 114.0 274 35.0
BraA08t32224Z Brassica rapa HOM05D002316 ORTHO05D002280 2.0e-23 113.6 219 39.7
Hund02243 Selenicereus undatus HOM05D002316 ORTHO05D002280 2.0e-23 113.6 224 42.0
ATR0733G115 Amborella trichopoda HOM05D002316 ORTHO05D002280 7.7e-23 111.7 209 40.2
arahy.Tifrunner.gnm1.ann1.BKZC9D Arachis hypogaea HOM05D002316 ORTHO05D002280 7.7e-23 111.7 274 34.7
Sp1g39830 Schrenkiella parvula HOM05D002316 ORTHO05D002280 1.0e-22 111.3 226 38.5
Sed0014162 Sechium edule HOM05D002316 ORTHO05D002280 1.3e-22 110.9 214 40.2
Actinidia12558 Actinidia chinensis HOM05D002316 ORTHO05D002280 1.7e-22 110.5 230 40.9
Potri.001G393700 Populus trichocarpa HOM05D002316 ORTHO05D002280 3.8e-22 109.4 214 40.7
A06p01090 Brassica napus HOM05D002316 ORTHO05D002280 8.5e-22 108.2 204 40.2
BraA06t23336Z Brassica rapa HOM05D002316 ORTHO05D002280 8.5e-22 108.2 204 40.2
Phvul.011G159500 Phaseolus vulgaris HOM05D002316 ORTHO05D002280 8.5e-22 108.2 267 35.2
Glyma.12G160300 Glycine max HOM05D002316 ORTHO05D002280 1.9e-21 107.1 267 34.8
TAR624G0466 Trochodendron aralioides HOM05D002316 ORTHO05D002280 4.2e-21 105.9 93 62.4
A08p01710 Brassica napus HOM05D002316 ORTHO05D002280 6.1e-20 102.1 221 38.5
VMungo1127G0079 Vigna mungo HOM05D002316 ORTHO05D002280 1.8e-19 100.5 267 34.1
AT1G53250 Arabidopsis thaliana HOM05D002316 ORTHO05D002280 3.0e-19 99.8 227 38.3
CARHR043490 Cardamine hirsuta HOM05D002316 ORTHO05D002280 4.0e-19 99.4 200 35.5
Lalb_Chr19g0133871 Lupinus albus HOM05D002316 ORTHO05D002280 6.8e-19 98.6 264 34.5
Medtr8g464010 Medicago truncatula HOM05D002316 ORTHO05D002280 2.2e-17 93.6 265 33.6
Carub.0001s4244 Capsella rubella HOM05D002316 ORTHO05D002280 8.3e-17 91.7 227 37.4
Lalb_Chr03g0031101 Lupinus albus HOM05D002316 ORTHO05D002280 4.1e-16 89.4 257 34.2
Lj3g0021485 Lotus japonicus HOM05D002316 ORTHO05D002280 1.2e-15 87.8 110 48.2
AUR62029619 Chenopodium quinoa HOM05D002316 ORTHO05D002280 7.7e-15 85.1 219 35.6
TPR.G11240 Trifolium pratense HOM05D002316 ORTHO05D002280 1.7e-14 84.0 255 31.8
CDE03G0166 Ceratophyllum demersum HOM05D002364 ORTHO05D002540 2.9e-14 83.2 76 55.3
Aqoxy4G00417 Aquilegia oxysepala HOM05D002316 ORTHO05D002280 1.1e-13 81.3 207 35.7
Duzib213G0761 Durio zibethinus HOM05D002316 ORTHO05D002280 3.2e-13 79.7 185 40.5
BcaC06g34075 Brassica carinata HOM05D010973 ORTHO05D014088 1.6e-12 77.4 89 47.2
BolC7t43813H Brassica oleracea HOM05D010973 ORTHO05D014088 1.6e-12 77.4 89 47.2
BcaB03g13985 Brassica carinata HOM05D010973 ORTHO05D014088 3.6e-12 76.3 158 38.0
Ca_26990_v3 Cicer arietinum L. HOM05D002316 ORTHO05D002280 4.7e-12 75.9 265 29.4
BcaC03g13719 Brassica carinata HOM05D010973 ORTHO05D014088 1.0e-11 74.7 86 48.8
C09p49360 Brassica napus HOM05D010973 ORTHO05D014088 1.0e-11 74.7 86 48.8
BolC9t57788H Brassica oleracea HOM05D010973 ORTHO05D014088 1.0e-11 74.7 86 48.8
C02p31140 Brassica napus HOM05D010973 ORTHO05D014088 2.3e-11 73.6 155 36.8
FAN11G1357 Fragaria x ananassa HOM05D002316 ORTHO05D002280 2.3e-11 73.6 55 60.0
BcaC07g38975 Brassica carinata HOM05D010973 ORTHO05D014088 4.0e-11 72.8 155 36.8
C08p19170 Brassica napus HOM05D010973 ORTHO05D014088 4.0e-11 72.8 155 36.8
BolC5t31476H Brassica oleracea HOM05D010973 ORTHO05D014088 4.0e-11 72.8 89 46.1
HPP92_020167 Vanilla planifolia HOM05D002316 ORTHO05D002280 4.0e-11 72.8 87 46.0
BcaC06g34072 Brassica carinata HOM05D010973 ORTHO05D014088 6.8e-11 72.0 86 47.7
C02p25290 Brassica napus HOM05D010973 ORTHO05D014088 6.8e-11 72.0 86 46.5
BcaC05g26903 Brassica carinata HOM05D010973 ORTHO05D014088 8.8e-11 71.6 80 48.8
Psat7g098680 Pisum sativum HOM05D002316 ORTHO05D002280 4.4e-10 69.3 148 36.5
BcaC06g34074 Brassica carinata HOM05D010973 ORTHO05D014088 1.7e-09 67.4 70 50.0
C05p27560 Brassica napus HOM05D010973 ORTHO05D014088 1.7e-09 67.4 86 46.5
Pp3c20_11380 Physcomitrium patens HOM05D002316 ORTHO05D002280 1.3e-06 57.8 106 34.0
Zm00001eb297560 Zea mays HOM05D002316 ORTHO05D002280 5.0e-06 55.8 165 32.1


User provided reference genes

Program Settings