Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen12g005450 Solanum pennellii HOM05D003969 ORTHO05D003125 3.2e-69 265.0 138 100.0
Solyc12g010430.1 Solanum lycopersicum HOM05D003969 ORTHO05D003125 1.4e-64 249.6 138 95.7
PGSC0003DMG400036991 Solanum tuberosum HOM05D003969 ORTHO05D003125 2.6e-63 245.4 140 93.6
CAN.G551.21 Capsicum annuum HOM05D003969 ORTHO05D003125 1.7e-38 162.9 145 67.6
Nitab4.5_0017863g0010 Nicotiana tabacum HOM05D003969 ORTHO05D003125 2.2e-38 162.5 141 69.5
Peaxi162Scf01184g00133 Petunia axillaris HOM05D003969 ORTHO05D003125 4.0e-35 151.8 129 69.0
Sopen07g003200 Solanum pennellii HOM05D003969 ORTHO05D003125 1.9e-29 132.9 150 49.3
Solyc07g007150.1 Solanum lycopersicum HOM05D003969 ORTHO05D003125 1.2e-28 130.2 149 49.7
Cc06_g07430 Coffea canephora HOM05D003969 ORTHO05D003125 1.6e-28 129.8 152 50.0
PGSC0003DMG400030696 Solanum tuberosum HOM05D003969 ORTHO05D003125 3.6e-28 128.6 156 47.4
Nitab4.5_0001751g0090 Nicotiana tabacum HOM05D003969 ORTHO05D003125 1.8e-27 126.3 111 71.2
Peaxi162Scf00391g00017 Petunia axillaris HOM05D003969 ORTHO05D003125 1.5e-26 123.2 148 48.0
Migut.K00379 Erythranthe guttata HOM05D003969 ORTHO05D003125 6.3e-25 117.9 124 59.7
SalBow1G8303 Salvia bowleyana HOM05D003969 ORTHO05D003125 4.1e-24 115.2 128 48.4
Nn2g12243 Nelumbo nucifera HOM05D003969 ORTHO05D003125 9.5e-21 104.0 128 46.1
Hma1.2p1_1784F.1_g302146 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 2.1e-20 102.8 141 42.6
Hma1.2p1_1784F.1_g302150 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 2.1e-20 102.8 141 42.6
MSTRG.10635 Avicennia marina HOM05D003969 ORTHO05D003125 6.1e-20 101.3 119 48.7
SGA_v2.0_scaffold500G52494 Striga asiatica HOM05D003969 ORTHO05D003125 6.1e-20 101.3 128 51.6
Dinv41425 Davidia involucrata HOM05D003969 ORTHO05D003125 1.4e-19 100.1 117 42.7
Hma1.2p1_0182F.1_g080470 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 3.1e-19 99.0 139 43.9
Hma1.2p1_2744F.1_g327795 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 3.1e-19 99.0 139 43.9
TAR636G2249 Trochodendron aralioides HOM05D003969 ORTHO05D003125 1.5e-18 96.7 117 44.4
Nn8g39714 Nelumbo nucifera HOM05D003969 ORTHO05D003125 7.5e-18 94.4 149 42.3
TAR625G0404 Trochodendron aralioides HOM05D003969 ORTHO05D003125 7.5e-18 94.4 128 44.5
Ca_21615_v3 Cicer arietinum L. HOM05D003969 ORTHO05D003125 9.8e-18 94.0 125 44.8
TAR626G0029 Trochodendron aralioides HOM05D003969 ORTHO05D003125 1.7e-17 93.2 116 44.8
Phvul.003G174600 Phaseolus vulgaris HOM05D003969 ORTHO05D003125 2.9e-17 92.4 125 42.4
MSTRG.10639 Avicennia marina HOM05D003969 ORTHO05D003125 3.7e-17 92.0 112 46.4
Lsat_1_v5_gn_8_63081 Lactuca sativa HOM05D003969 ORTHO05D003125 3.7e-17 92.0 134 38.8
Psat4g033280 Pisum sativum HOM05D003969 ORTHO05D003125 8.3e-17 90.9 127 40.9
Lalb_Chr12g0198511 Lupinus albus HOM05D003969 ORTHO05D003125 1.1e-16 90.5 140 39.3
Medtr4g116500 Medicago truncatula HOM05D003969 ORTHO05D003125 1.4e-16 90.1 127 41.7
Glyma.17G105200 Glycine max HOM05D003969 ORTHO05D003125 1.9e-16 89.7 128 39.8
TAR383G0074 Trochodendron aralioides HOM05D003969 ORTHO05D003125 5.4e-16 88.2 139 41.7
VMungo1215G0564 Vigna mungo HOM05D003969 ORTHO05D003125 5.4e-16 88.2 121 40.5
Glyma.13G157500 Glycine max HOM05D003969 ORTHO05D003125 7.0e-16 87.8 133 39.8
TWI34G1911 Tripterygium wilfordii HOM05D003969 ORTHO05D003125 1.6e-15 86.7 141 39.7
MBI14_g03633_MAGBIO Magnolia biondii HOM05D003969 ORTHO05D003125 2.0e-15 86.3 116 40.5
Lalb_Chr13g0301201 Lupinus albus HOM05D003969 ORTHO05D003125 2.7e-15 85.9 135 41.5
TPR.G15776 Trifolium pratense HOM05D003969 ORTHO05D003125 2.7e-15 85.9 146 38.4
Lj4g0023658 Lotus japonicus HOM05D003969 ORTHO05D003125 7.8e-15 84.3 142 37.3
Rhsim03G0254600 Rhododendron simsii HOM05D000320 ORTHO05D000532 2.3e-14 82.8 127 38.6
ClCG02G017250 Citrullus lanatus HOM05D003969 ORTHO05D003125 3.9e-14 82.0 146 36.3
Atru.chr7.265 Acer truncatum HOM05D003969 ORTHO05D003125 5.0e-14 81.6 126 41.3
Gohir.D13G208500 Gossypium hirsutum HOM05D003969 ORTHO05D003125 8.6e-14 80.9 146 39.0
Gorai.013G237600 Gossypium raimondii HOM05D003969 ORTHO05D003125 8.6e-14 80.9 146 39.0
HanXRQChr05g0141561 Helianthus annuus HOM05D003969 ORTHO05D003125 8.6e-14 80.9 122 37.7
CSS0019227 Camellia sinensis var. sinensis HOM05D003969 ORTHO05D003125 1.1e-13 80.5 122 42.6
CSS0049905 Camellia sinensis var. sinensis HOM05D003969 ORTHO05D003125 1.1e-13 80.5 122 42.6
PGR142G4289 Punica granatum HOM05D003969 ORTHO05D003125 4.3e-13 78.6 134 38.1
Gohir.A13G203200 Gossypium hirsutum HOM05D003969 ORTHO05D003125 7.3e-13 77.8 146 37.7
Actinidia21911 Actinidia chinensis HOM05D003969 ORTHO05D003125 2.1e-12 76.3 124 36.3
Aa31sc598G40 Aethionema arabicum HOM05D003969 ORTHO05D003125 2.1e-12 76.3 126 36.5
Ah.10g035700 Amaranthus hybridus HOM05D003969 ORTHO05D003125 2.8e-12 75.9 120 45.8
Actinidia04245 Actinidia chinensis HOM05D003969 ORTHO05D003125 3.6e-12 75.5 127 43.3
PGSC0003DMG400029901 Solanum tuberosum HOM05D003969 ORTHO05D003125 3.6e-12 75.5 143 35.7
AUR62031569 Chenopodium quinoa HOM05D003969 ORTHO05D003125 4.7e-12 75.1 115 43.5
AUR62041449 Chenopodium quinoa HOM05D003969 ORTHO05D003125 6.2e-12 74.7 149 34.9
ECA236G4020 Erigeron canadensis HOM05D003969 ORTHO05D003125 8.1e-12 74.3 133 31.6
CDE02G3523 Ceratophyllum demersum HOM05D000894 ORTHO05D001833 1.1e-11 73.9 126 37.3
Sp7g07270 Schrenkiella parvula HOM05D003969 ORTHO05D003125 1.8e-11 73.2 140 33.6
HPP92_005341 Vanilla planifolia HOM05D003969 ORTHO05D003125 1.8e-11 73.2 130 36.9
AUR62012444 Chenopodium quinoa HOM05D003969 ORTHO05D003125 2.3e-11 72.8 115 42.6
THA.LOC104815394 Tarenaya hassleriana HOM05D003969 ORTHO05D003125 3.1e-11 72.4 158 34.8
Dinv15887 Davidia involucrata HOM05D003969 ORTHO05D003125 4.0e-11 72.0 103 38.8
Thhalv10005689m.g Eutrema salsugineum HOM05D003969 ORTHO05D003125 4.0e-11 72.0 142 33.1
Sed0021780 Sechium edule HOM05D003969 ORTHO05D003125 4.0e-11 72.0 151 39.1
THA.LOC104808923 Tarenaya hassleriana HOM05D003969 ORTHO05D003125 6.8e-11 71.2 140 41.4
Cpa.g.sc46.86 Carica papaya HOM05D003969 ORTHO05D003125 8.9e-11 70.9 140 36.4
Prupe.7G255000 Prunus persica HOM05D003969 ORTHO05D003125 1.2e-10 70.5 144 31.9
Thecc.09G141500 Theobroma cacao HOM05D003969 ORTHO05D003125 1.2e-10 70.5 165 37.0
BcaB04g18063 Brassica carinata HOM05D003969 ORTHO05D003125 1.5e-10 70.1 125 36.8
Rhsim01G0052800 Rhododendron simsii HOM05D016725 ORTHO05D003125 1.5e-10 70.1 119 36.1
Solyc01g011390.2 Solanum lycopersicum HOM05D003969 ORTHO05D003125 1.5e-10 70.1 74 48.6
Solyc08g041810.1 Solanum lycopersicum HOM05D003969 ORTHO05D003125 1.5e-10 70.1 119 36.1
Ah.16g104800 Amaranthus hybridus HOM05D003969 ORTHO05D003125 2.0e-10 69.7 124 40.3
MELO3C004442.2 Cucumis melo HOM05D003969 ORTHO05D003125 2.0e-10 69.7 158 33.5
Peaxi162Scf00116g00085 Petunia axillaris HOM05D003969 ORTHO05D003125 2.0e-10 69.7 121 39.7
Sc23g0006550 Simmondsia chinensis HOM05D003969 ORTHO05D003125 2.0e-10 69.7 133 37.6
Duzib150G0809 Durio zibethinus HOM05D003969 ORTHO05D003125 2.6e-10 69.3 169 36.7
Sopen08g011970 Solanum pennellii HOM05D003969 ORTHO05D003125 2.6e-10 69.3 119 36.1
Duzib168G2018 Durio zibethinus HOM05D003969 ORTHO05D003125 3.4e-10 68.9 153 35.9
Sc23g0006560 Simmondsia chinensis HOM05D003969 ORTHO05D003125 4.4e-10 68.6 128 35.9
PGSC0003DMG400005307 Solanum tuberosum HOM05D003969 ORTHO05D003125 4.4e-10 68.6 71 50.7
Hma1.2p1_0228F.1_g096590 Hydrangea macrophylla HOM05D003969 ORTHO05D003125 5.8e-10 68.2 112 38.4
CiPaw.15G182600 Carya illinoinensis HOM05D003969 ORTHO05D003125 7.5e-10 67.8 133 34.6
AUR62011257 Chenopodium quinoa HOM05D003969 ORTHO05D003125 7.5e-10 67.8 148 34.5
MELO3C016989.2 Cucumis melo HOM05D003969 ORTHO05D003125 7.5e-10 67.8 118 39.0
Migut.A00008 Erythranthe guttata HOM05D003969 ORTHO05D003125 7.5e-10 67.8 113 33.6
Rhsim01G0050100 Rhododendron simsii HOM05D016725 ORTHO05D003125 7.5e-10 67.8 120 35.8
EL10Ac2g04157 Beta vulgaris HOM05D003969 ORTHO05D003125 9.8e-10 67.4 113 42.5
Carub.0007s3088 Capsella rubella HOM05D003969 ORTHO05D003125 9.8e-10 67.4 136 32.4
AL7G43940 Arabidopsis lyrata HOM05D003969 ORTHO05D003125 1.7e-09 66.6 134 32.1
AT5G35090 Arabidopsis thaliana HOM05D003969 ORTHO05D003125 1.7e-09 66.6 133 31.6
Sc23g0006570 Simmondsia chinensis HOM05D003969 ORTHO05D003125 1.7e-09 66.6 118 37.3
Aqoxy7G00610 Aquilegia oxysepala HOM05D003969 ORTHO05D003125 2.2e-09 66.2 117 37.6
PSO675G3576 Papaver somniferum HOM05D003969 ORTHO05D003125 2.9e-09 65.9 145 31.7
Sc08g0005750 Simmondsia chinensis HOM05D003969 ORTHO05D003125 2.9e-09 65.9 118 37.3
EL10Ac8g18819 Beta vulgaris HOM05D003969 ORTHO05D003125 3.7e-09 65.5 139 32.4
PSO732G0403 Papaver somniferum HOM05D003969 ORTHO05D003125 3.7e-09 65.5 145 35.9
Cc08_g00220 Coffea canephora HOM05D003969 ORTHO05D003125 6.4e-09 64.7 119 37.0
Haze_19321 Corylus avellana HOM05D003969 ORTHO05D003125 8.3e-09 64.3 65 50.8
Thecc.09G019700 Theobroma cacao HOM05D003969 ORTHO05D003125 1.1e-08 63.9 136 34.6
Nitab4.5_0002992g0060 Nicotiana tabacum HOM05D003969 ORTHO05D003125 1.4e-08 63.5 131 34.4
BcaC07g37678 Brassica carinata HOM05D003969 ORTHO05D003125 1.9e-08 63.2 125 33.6
BolC8t48050H Brassica oleracea HOM05D003969 ORTHO05D003125 1.9e-08 63.2 125 33.6
CiPaw.15G182500 Carya illinoinensis HOM05D003969 ORTHO05D003125 1.9e-08 63.2 133 35.3
Dinv11721 Davidia involucrata HOM05D003969 ORTHO05D003125 1.9e-08 63.2 69 46.4
Peaxi162Scf00315g00011 Petunia axillaris HOM05D003969 ORTHO05D003125 2.4e-08 62.8 80 43.8
RcHm_v2.0_Chr2g0086701 Rosa chinensis HOM05D003969 ORTHO05D003125 2.4e-08 62.8 165 31.5
Gohir.A05G011500 Gossypium hirsutum HOM05D003969 ORTHO05D003125 3.2e-08 62.4 135 38.5
Rhsim02G0205800 Rhododendron simsii HOM05D003969 ORTHO05D003125 3.2e-08 62.4 114 34.2
Sopen01g007400 Solanum pennellii HOM05D003969 ORTHO05D003125 3.2e-08 62.4 70 47.1
CANSAT11G0887 Cannabis sativa HOM05D003969 ORTHO05D003125 4.1e-08 62.0 120 32.5
Glyma.14G112500 Glycine max HOM05D003969 ORTHO05D003125 4.1e-08 62.0 52 59.6
A08p09570 Brassica napus HOM05D003969 ORTHO05D003125 5.4e-08 61.6 125 33.6
BraA08t32954Z Brassica rapa HOM05D003969 ORTHO05D003125 5.4e-08 61.6 125 33.6
ClCG05G016610 Citrullus lanatus HOM05D003969 ORTHO05D003125 5.4e-08 61.6 71 46.5
Nitab4.5_0000069g0040 Nicotiana tabacum HOM05D003969 ORTHO05D003125 5.4e-08 61.6 87 40.2
Potri.003G070750 Populus trichocarpa HOM05D008824 ORTHO05D003125 7.1e-08 61.2 131 36.6
MSTRG.26029 Avicennia marina HOM05D003969 ORTHO05D003125 1.2e-07 60.5 80 38.8
CSS0007982 Camellia sinensis var. sinensis HOM05D003969 ORTHO05D003125 1.2e-07 60.5 140 32.9
vmacro12402 Vaccinium macrocarpon HOM05D006851 ORTHO05D008844 1.2e-07 60.5 110 37.3
Aqoxy7G03536 Aquilegia oxysepala HOM05D003969 ORTHO05D003125 1.6e-07 60.1 142 33.8
CsaV3_4G036890 Cucumis sativus L. HOM05D003969 ORTHO05D003125 1.6e-07 60.1 122 37.7
Nitab4.5_0010572g0020 Nicotiana tabacum HOM05D003969 ORTHO05D003125 1.6e-07 60.1 83 39.8
PGR031G2169 Punica granatum HOM05D003969 ORTHO05D003125 1.6e-07 60.1 76 40.8
CDE02G0310 Ceratophyllum demersum HOM05D003969 ORTHO05D003125 2.1e-07 59.7 84 38.1
FAN23G1308 Fragaria x ananassa HOM05D003969 ORTHO05D003125 2.1e-07 59.7 164 29.9
Potri.006G259200 Populus trichocarpa HOM05D008824 ORTHO05D003125 2.1e-07 59.7 132 34.8
HPP92_023807 Vanilla planifolia HOM05D003969 ORTHO05D003125 2.1e-07 59.7 125 31.2
Gohir.D07G034000 Gossypium hirsutum HOM05D003969 ORTHO05D003125 2.7e-07 59.3 106 34.0
Gorai.001G035600 Gossypium raimondii HOM05D003969 ORTHO05D003125 2.7e-07 59.3 106 34.0
Oeu057292.1 Olea europaea HOM05D003969 ORTHO05D003125 2.7e-07 59.3 117 35.0
Cfa013102 Carpinus fangiana HOM05D003969 ORTHO05D003125 3.5e-07 58.9 119 32.8
COL.COLO4_24105 Corchorus olitorius HOM05D003969 ORTHO05D003125 3.5e-07 58.9 91 36.3
Lalb_Chr22g0361461 Lupinus albus HOM05D013068 ORTHO05D003125 3.5e-07 58.9 137 32.1
Rhsim01G0050000 Rhododendron simsii HOM05D016725 ORTHO05D003125 3.5e-07 58.9 113 32.7
Ciclev10009935m.g Citrus clementina HOM05D003969 ORTHO05D003125 4.6e-07 58.5 112 36.6
Gohir.D05G012200 Gossypium hirsutum HOM05D003969 ORTHO05D003125 4.6e-07 58.5 139 33.8
COL.COLO4_18912 Corchorus olitorius HOM05D003969 ORTHO05D003125 6.0e-07 58.2 143 34.3
Eucgr.L03259 Eucalyptus grandis HOM05D003969 ORTHO05D003125 7.8e-07 57.8 60 61.7
Gohir.A05G056900 Gossypium hirsutum HOM05D003969 ORTHO05D003125 7.8e-07 57.8 118 31.4
Phvul.001G047400 Phaseolus vulgaris HOM05D013068 ORTHO05D003125 7.8e-07 57.8 48 58.3
QL02p091243 Quercus lobata HOM05D003969 ORTHO05D003125 7.8e-07 57.8 157 30.6
Eucgr.C01701 Eucalyptus grandis HOM05D003969 ORTHO05D003125 1.0e-06 57.4 49 63.3
FAN19G0689 Fragaria x ananassa HOM05D003969 ORTHO05D003125 1.0e-06 57.4 164 29.9
Gorai.009G012500 Gossypium raimondii HOM05D003969 ORTHO05D003125 1.0e-06 57.4 136 39.0
Sed0009487 Sechium edule HOM05D003969 ORTHO05D003125 1.0e-06 57.4 50 54.0
Eucgr.C01687 Eucalyptus grandis HOM05D003969 ORTHO05D003125 1.3e-06 57.0 57 57.9
Gohir.A07G030200 Gossypium hirsutum HOM05D003969 ORTHO05D003125 1.7e-06 56.6 63 46.0
CARHR217160 Cardamine hirsuta HOM05D003969 ORTHO05D003125 2.3e-06 56.2 74 41.9
FAN26G0199 Fragaria x ananassa HOM05D003969 ORTHO05D003125 3.0e-06 55.8 145 29.7
Manes.14G138428 Manihot esculenta HOM05D003969 ORTHO05D003125 3.0e-06 55.8 52 53.8
Actinidia23308 Actinidia chinensis HOM05D003969 ORTHO05D003125 3.9e-06 55.5 60 48.3
Eucgr.C01695 Eucalyptus grandis HOM05D003969 ORTHO05D003125 3.9e-06 55.5 60 60.0
FAN20G0523 Fragaria x ananassa HOM05D019695 ORTHO05D022679 3.9e-06 55.5 140 30.0
FAN27G0582 Fragaria x ananassa HOM05D019695 ORTHO05D022679 3.9e-06 55.5 140 30.7
QL02p020337 Quercus lobata HOM05D008824 ORTHO05D003125 3.9e-06 55.5 125 33.6
HPP92_006060 Vanilla planifolia HOM05D003969 ORTHO05D003125 3.9e-06 55.5 127 30.7
Zm00001eb275140 Zea mays HOM05D021431 ORTHO05D003125 3.9e-06 55.5 79 44.3
Lj5g0018030 Lotus japonicus HOM05D013068 ORTHO05D003125 5.1e-06 55.1 50 52.0
Sabra18G0025300 Salix brachista HOM05D008824 ORTHO05D003125 5.1e-06 55.1 126 34.9
Manes.16G125900 Manihot esculenta HOM05D008824 ORTHO05D003125 6.6e-06 54.7 117 31.6
Oeu010893.1 Olea europaea HOM05D003969 ORTHO05D003125 6.6e-06 54.7 121 31.4
arahy.Tifrunner.gnm1.ann1.8XJ8NX Arachis hypogaea HOM05D013068 ORTHO05D003125 8.6e-06 54.3 74 41.9
FAN28G0460 Fragaria x ananassa HOM05D003969 ORTHO05D003125 8.6e-06 54.3 164 29.3
Glyma.17G215400 Glycine max HOM05D013068 ORTHO05D003125 8.6e-06 54.3 131 32.1
HPP92_020075 Vanilla planifolia HOM05D003969 ORTHO05D003125 8.6e-06 54.3 88 38.6
VMungo0647G1373 Vigna mungo HOM05D013068 ORTHO05D003125 8.6e-06 54.3 48 56.2


User provided reference genes

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