Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen12g005310 Solanum pennellii HOM05D007014 ORTHO05D008894 1.2e-83 313.2 156 100.0
Solyc12g010680.3 Solanum lycopersicum HOM05D007014 ORTHO05D008894 2.1e-80 302.4 156 95.5
PGSC0003DMG400007868 Solanum tuberosum HOM05D007014 ORTHO05D008894 1.3e-79 299.7 156 94.9
PGSC0003DMG400007866 Solanum tuberosum HOM05D007014 ORTHO05D008894 9.5e-78 293.5 156 92.3
Nitab4.5_0003022g0100 Nicotiana tabacum HOM05D007014 ORTHO05D008894 1.9e-73 279.3 153 89.5
CAN.G486.11 Capsicum annuum HOM05D007014 ORTHO05D008894 1.7e-71 272.7 153 87.6
Peaxi162Scf02133g00022 Petunia axillaris HOM05D007014 ORTHO05D008894 1.5e-70 269.6 151 86.1
Nitab4.5_0002575g0020 Nicotiana tabacum HOM05D007014 ORTHO05D008894 1.6e-69 266.2 170 80.0
Oeu029922.1 Olea europaea HOM05D007014 ORTHO05D008894 9.3e-65 250.4 154 79.2
Dinv02170 Davidia involucrata HOM05D007014 ORTHO05D008894 1.0e-63 246.9 150 79.3
Hma1.2p1_1201F.1_g266700 Hydrangea macrophylla HOM05D007014 ORTHO05D008894 6.6e-63 244.2 152 78.9
Potri.013G134102 Populus trichocarpa HOM05D007014 ORTHO05D008894 5.6e-62 241.1 153 77.8
Cfa014594 Carpinus fangiana HOM05D007014 ORTHO05D008894 7.3e-62 240.7 150 77.3
Potri.013G134000 Populus trichocarpa HOM05D007014 ORTHO05D008894 7.3e-62 240.7 153 77.8
CSS0024097 Camellia sinensis var. sinensis HOM05D007014 ORTHO05D008894 9.6e-62 240.4 151 80.8
Haze_13147 Corylus avellana HOM05D007014 ORTHO05D008894 1.6e-61 239.6 150 78.0
Cc05_g06870 Coffea canephora HOM05D007014 ORTHO05D008894 2.1e-61 239.2 154 76.6
RcHm_v2.0_Chr6g0277731 Rosa chinensis HOM05D007014 ORTHO05D008894 2.8e-61 238.8 151 77.5
GSVIVG01030373001 Vitis vinifera HOM05D007014 ORTHO05D008894 3.6e-61 238.4 154 76.0
SGA_v2.0_scaffold307G48064 Striga asiatica HOM05D007014 ORTHO05D008894 8.1e-61 237.3 154 73.4
QL08p038417 Quercus lobata HOM05D007014 ORTHO05D008894 1.8e-60 236.1 152 75.0
SalBow1G7232 Salvia bowleyana HOM05D007014 ORTHO05D008894 2.4e-60 235.7 154 72.7
MELO3C024591.2 Cucumis melo HOM05D007014 ORTHO05D008894 9.0e-60 233.8 149 74.5
Prupe.3G155400 Prunus persica HOM05D007014 ORTHO05D008894 9.0e-60 233.8 150 76.0
Sabra13G0113800 Salix brachista HOM05D007014 ORTHO05D008894 1.5e-59 233.0 153 75.2
HanXRQChr17g0553541 Helianthus annuus HOM05D007014 ORTHO05D008894 3.4e-59 231.9 154 72.7
Rhsim04G0068000 Rhododendron simsii HOM05D007014 ORTHO05D008894 3.4e-59 231.9 150 74.0
Manes.12G090900 Manihot esculenta HOM05D007014 ORTHO05D008894 4.5e-59 231.5 153 73.9
unitig_21.g20401 Utricularia gibba HOM05D007014 ORTHO05D008894 7.6e-59 230.7 149 71.1
MSTRG.12316 Avicennia marina HOM05D007014 ORTHO05D008894 9.9e-59 230.3 154 73.4
Lj8A113T47 Lonicera japonica HOM05D007014 ORTHO05D008894 1.3e-58 229.9 149 72.5
MD09G1249800 Malus domestica HOM05D007014 ORTHO05D008894 1.3e-58 229.9 154 74.0
vmacro09278 Vaccinium macrocarpon HOM05D007014 ORTHO05D008894 1.7e-58 229.6 150 72.0
ClCG02G017580 Citrullus lanatus HOM05D007014 ORTHO05D008894 2.2e-58 229.2 150 72.7
Ciclev10022606m.g Citrus clementina HOM05D007014 ORTHO05D008894 2.2e-58 229.2 150 72.7
Ciclev10022631m.g Citrus clementina HOM05D007014 ORTHO05D008894 3.8e-58 228.4 153 71.9
Cpa.g.sc34.144 Carica papaya HOM05D007014 ORTHO05D008894 6.4e-58 227.6 148 75.0
FAN27G2134 Fragaria x ananassa HOM05D007014 ORTHO05D008894 6.4e-58 227.6 152 74.3
Thecc.02G177900 Theobroma cacao HOM05D007014 ORTHO05D008894 1.1e-57 226.9 151 74.2
Nn1g06593 Nelumbo nucifera HOM05D007014 ORTHO05D008894 1.9e-57 226.1 153 70.6
COL.COLO4_07554 Corchorus olitorius HOM05D007014 ORTHO05D008894 3.2e-57 225.3 151 74.2
CANSAT78G1474 Cannabis sativa HOM05D007014 ORTHO05D008894 1.6e-56 223.0 149 71.1
Migut.H01076 Erythranthe guttata HOM05D007014 ORTHO05D008894 1.6e-56 223.0 151 70.2
FvH4_2g15130 Fragaria vesca HOM05D007014 ORTHO05D008894 1.6e-56 223.0 152 73.0
TAR629G1268 Trochodendron aralioides HOM05D007014 ORTHO05D008894 1.6e-56 223.0 149 73.2
Sed0017748 Sechium edule HOM05D007014 ORTHO05D008894 2.1e-56 222.6 149 72.5
FAN15G2141 Fragaria x ananassa HOM05D007014 ORTHO05D008894 2.7e-56 222.2 149 75.8
Duzib052G1001 Durio zibethinus HOM05D007014 ORTHO05D008894 3.5e-56 221.9 154 73.4
Carub.0001s0276 Capsella rubella HOM05D007014 ORTHO05D008894 1.8e-55 219.5 150 70.7
AL1G13150 Arabidopsis lyrata HOM05D007014 ORTHO05D008894 2.3e-55 219.2 150 70.7
Gohir.A13G056000 Gossypium hirsutum HOM05D007014 ORTHO05D008894 2.3e-55 219.2 153 71.2
Gohir.D13G066000 Gossypium hirsutum HOM05D007014 ORTHO05D008894 3.0e-55 218.8 152 72.4
Gorai.013G075300 Gossypium raimondii HOM05D007014 ORTHO05D008894 3.0e-55 218.8 152 72.4
AT1G03650 Arabidopsis thaliana HOM05D007014 ORTHO05D008894 6.7e-55 217.6 150 70.0
BcaC07g42236 Brassica carinata HOM05D007014 ORTHO05D008894 8.7e-55 217.2 149 69.8
CARHR002980 Cardamine hirsuta HOM05D007014 ORTHO05D008894 8.7e-55 217.2 150 70.0
Sp1g02550 Schrenkiella parvula HOM05D007014 ORTHO05D008894 1.5e-54 216.5 150 68.7
Sc21g0002660 Simmondsia chinensis HOM05D007014 ORTHO05D008894 1.9e-54 216.1 158 68.4
TWI36G0686 Tripterygium wilfordii HOM05D007014 ORTHO05D008894 3.3e-54 215.3 150 70.7
Phvul.011G117200 Phaseolus vulgaris HOM05D007014 ORTHO05D008894 5.6e-54 214.5 150 72.7
Thhalv10008981m.g Eutrema salsugineum HOM05D007014 ORTHO05D008894 1.6e-53 213.0 149 69.8
Ca_28202_v3 Cicer arietinum L. HOM05D007014 ORTHO05D008894 2.1e-53 212.6 150 72.0
Medtr4g046047 Medicago truncatula HOM05D007014 ORTHO05D008894 2.8e-53 212.2 151 71.5
Aa31LG1G20970 Aethionema arabicum HOM05D007014 ORTHO05D008894 3.7e-53 211.8 150 67.3
Glyma.12G111800 Glycine max HOM05D007014 ORTHO05D008894 3.7e-53 211.8 150 72.0
Aqoxy4G01010 Aquilegia oxysepala HOM05D007014 ORTHO05D008894 4.8e-53 211.5 150 66.7
BcaC07g42241 Brassica carinata HOM05D007014 ORTHO05D008894 6.2e-53 211.1 150 68.0
EL10Ac9g20747 Beta vulgaris HOM05D007014 ORTHO05D008894 1.1e-52 210.3 149 67.8
PSO210G2618 Papaver somniferum HOM05D007014 ORTHO05D008894 1.1e-52 210.3 149 67.1
CsaV3_6G013010 Cucumis sativus L. HOM05D007014 ORTHO05D008894 1.8e-52 209.5 161 64.0
TPR.G21768 Trifolium pratense HOM05D007014 ORTHO05D008894 3.1e-52 208.8 150 72.7
Lj3g0024821 Lotus japonicus HOM05D007014 ORTHO05D008894 4.0e-52 208.4 150 71.3
THA.LOC104801176 Tarenaya hassleriana HOM05D007014 ORTHO05D008894 5.3e-52 208.0 149 67.1
CDE02G4296 Ceratophyllum demersum HOM05D007014 ORTHO05D008894 1.2e-51 206.8 151 66.2
PSO832G4125 Papaver somniferum HOM05D007014 ORTHO05D008894 1.2e-51 206.8 149 66.4
MBI17_g43194_MAGBIO Magnolia biondii HOM05D007014 ORTHO05D008894 2.0e-51 206.1 138 73.2
FAN24G2354 Fragaria x ananassa HOM05D007014 ORTHO05D008894 3.4e-51 205.3 150 70.7
CiPaw.03G175500 Carya illinoinensis HOM05D007014 ORTHO05D008894 4.5e-51 204.9 133 73.7
BcaC07g42250 Brassica carinata HOM05D007014 ORTHO05D008894 9.9e-51 203.8 154 64.9
C08p52830 Brassica napus HOM05D007014 ORTHO05D008894 9.9e-51 203.8 154 64.9
arahy.Tifrunner.gnm1.ann1.1ZYA2W Arachis hypogaea HOM05D007014 ORTHO05D008894 1.3e-50 203.4 153 66.0
BraA09t42163Z Brassica rapa HOM05D007014 ORTHO05D008894 2.2e-50 202.6 150 66.7
Psat7g157760 Pisum sativum HOM05D007014 ORTHO05D008894 2.2e-50 202.6 150 70.7
BolC8t52799H Brassica oleracea HOM05D007014 ORTHO05D008894 2.9e-50 202.2 150 67.3
arahy.Tifrunner.gnm1.ann1.YPG8JQ Arachis hypogaea HOM05D007014 ORTHO05D008894 3.8e-50 201.8 152 65.8
Glyma.06G293600 Glycine max HOM05D007014 ORTHO05D008894 2.4e-49 199.1 150 68.0
arahy.Tifrunner.gnm1.ann1.UXPW02 Arachis hypogaea HOM05D007014 ORTHO05D008894 7.1e-49 197.6 152 64.5
BcaC07g42259 Brassica carinata HOM05D007014 ORTHO05D008894 7.1e-49 197.6 154 64.3
VMungo1127G0420 Vigna mungo HOM05D007014 ORTHO05D008894 3.0e-47 192.2 174 59.2
HPP92_002954 Vanilla planifolia HOM05D007014 ORTHO05D008894 1.1e-46 190.3 162 59.3
Lsat_1_v5_gn_8_133041 Lactuca sativa HOM05D007014 ORTHO05D008894 5.6e-46 188.0 153 59.5
ECA233G3399 Erigeron canadensis HOM05D007880 ORTHO05D003386 4.0e-44 181.8 133 67.7
ATR0680G283 Amborella trichopoda HOM05D007014 ORTHO05D008894 2.0e-43 179.5 153 56.9
Zm00001eb044400 Zea mays HOM05D007014 ORTHO05D008894 2.6e-43 179.1 151 60.3
Zm00001eb044470 Zea mays HOM05D007014 ORTHO05D008894 1.3e-42 176.8 151 59.6
arahy.Tifrunner.gnm1.ann1.THUB96 Arachis hypogaea HOM05D007014 ORTHO05D008894 3.8e-42 175.3 135 65.2
TWI36G1550 Tripterygium wilfordii HOM05D007014 ORTHO05D008894 8.4e-42 174.1 153 55.6
Actinidia30478 Actinidia chinensis HOM05D007014 ORTHO05D008894 8.7e-39 164.1 95 81.1
Mapoly0101s0002 Marchantia polymorpha HOM05D007014 ORTHO05D008894 2.6e-35 152.5 151 53.6
Os10g0500400 Oryza sativa ssp. japonica HOM05D007014 ORTHO05D008894 4.5e-35 151.8 166 49.4
Lsat_1_v5_gn_8_132641 Lactuca sativa HOM05D007014 ORTHO05D008894 5.0e-34 148.3 93 77.4
Lalb_Chr01g0005301 Lupinus albus HOM05D007014 ORTHO05D008894 9.4e-33 144.1 90 77.8
C08p52730 Brassica napus HOM05D007014 ORTHO05D008894 2.3e-31 139.4 102 66.7
A09p68280 Brassica napus HOM05D001041 ORTHO05D000846 5.1e-31 138.3 100 67.0
QL12p004320 Quercus lobata HOM05D007014 ORTHO05D008894 6.9e-28 127.9 78 76.9
AagrBONN_evm.TU.Sc2ySwM_344.4393 Anthoceros agrestis HOM05D007014 ORTHO05D008894 3.4e-27 125.6 145 46.9
Ciclev10023600m.g Citrus clementina HOM05D007014 ORTHO05D008894 2.5e-25 119.4 76 73.7
Sabra11G0072100 Salix brachista HOM05D000036 ORTHO05D000095 5.5e-25 118.2 76 73.7
Sabra15G0066900 Salix brachista HOM05D000036 ORTHO05D000095 5.5e-25 118.2 76 73.7
DCAR_013001 Daucus carota HOM05D007014 ORTHO05D008894 1.1e-22 110.5 81 70.4
Hund01169 Selenicereus undatus HOM05D007014 ORTHO05D008894 1.1e-22 110.5 77 70.1
Sabra13G0113700 Salix brachista HOM05D000264 ORTHO05D000152 4.4e-22 108.6 76 71.1
AUR62037369 Chenopodium quinoa HOM05D007014 ORTHO05D008894 5.5e-17 91.7 66 63.6
MELO3C013609.2 Cucumis melo HOM05D007014 ORTHO05D008894 6.7e-15 84.7 66 59.1
SalBow1G7442 Salvia bowleyana HOM05D007014 ORTHO05D008894 7.4e-14 81.3 51 68.6
PRCOL_00005877 Prasinoderma coloniale HOM05D007014 ORTHO05D008894 1.7e-13 80.1 100 42.0
Pp3c2_27490 Physcomitrium patens HOM05D007014 ORTHO05D008894 5.0e-10 68.6 77 45.5
Hund03009 Selenicereus undatus HOM05D004398 ORTHO05D005268 2.0e-06 56.6 74 33.8


User provided reference genes

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