Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen12g004850 Solanum pennellii HOM05D004106 ORTHO05D004381 8.1e-100 367.1 185 100.0
Solyc12g009980.2 Solanum lycopersicum HOM05D004106 ORTHO05D004381 3.7e-97 358.2 185 98.4
PGSC0003DMG400007906 Solanum tuberosum HOM05D004106 ORTHO05D004381 3.2e-96 355.1 185 97.3
CAN.G551.46 Capsicum annuum HOM05D004106 ORTHO05D004381 8.6e-94 347.1 185 94.6
Peaxi162Scf00062g00225 Petunia axillaris HOM05D004106 ORTHO05D004381 2.1e-76 289.3 170 88.2
QL02p093501 Quercus lobata HOM05D004106 ORTHO05D004381 1.3e-68 263.5 196 72.4
Nitab4.5_0002891g0090 Nicotiana tabacum HOM05D004106 ORTHO05D004381 1.8e-67 259.6 190 75.8
Nitab4.5_0008875g0050 Nicotiana tabacum HOM05D004106 ORTHO05D004381 2.4e-67 259.2 190 75.3
Cc06_g14830 Coffea canephora HOM05D004106 ORTHO05D004381 9.0e-67 257.3 195 71.8
Ciclev10009489m.g Citrus clementina HOM05D004106 ORTHO05D004381 9.9e-66 253.8 193 72.5
VMungo1080G0447 Vigna mungo HOM05D004106 ORTHO05D004381 3.8e-65 251.9 196 69.4
Lalb_Chr07g0179881 Lupinus albus HOM05D004106 ORTHO05D004381 2.4e-64 249.2 196 69.4
Potri.018G105600 Populus trichocarpa HOM05D004106 ORTHO05D004381 9.3e-64 247.3 196 68.9
TAR383G0918 Trochodendron aralioides HOM05D004106 ORTHO05D004381 9.3e-64 247.3 192 72.4
vmacro06074 Vaccinium macrocarpon HOM05D004106 ORTHO05D004381 9.3e-64 247.3 196 69.9
Glyma.12G156200 Glycine max HOM05D004106 ORTHO05D004381 3.5e-63 245.4 196 68.4
Dinv08178 Davidia involucrata HOM05D004106 ORTHO05D004381 4.6e-63 245.0 195 70.8
arahy.Tifrunner.gnm1.ann1.U84FQB Arachis hypogaea HOM05D004106 ORTHO05D004381 2.3e-62 242.7 196 67.3
Duzib150G0841 Durio zibethinus HOM05D004106 ORTHO05D004381 2.3e-62 242.7 188 71.8
Duzib168G0532 Durio zibethinus HOM05D004106 ORTHO05D004381 2.3e-62 242.7 196 70.4
TAR626G0743 Trochodendron aralioides HOM05D004106 ORTHO05D004381 3.0e-62 242.3 199 68.8
Atru.chr7.22 Acer truncatum HOM05D004106 ORTHO05D004381 3.9e-62 241.9 192 71.4
Phvul.005G005700 Phaseolus vulgaris HOM05D004106 ORTHO05D004381 5.1e-62 241.5 196 68.4
MBI15_g18237_MAGBIO Magnolia biondii HOM05D004106 ORTHO05D004381 6.7e-62 241.1 196 67.9
Migut.K00317 Erythranthe guttata HOM05D004106 ORTHO05D004381 2.5e-61 239.2 183 71.0
Glyma.06G225800 Glycine max HOM05D004106 ORTHO05D004381 2.5e-61 239.2 195 67.2
Dinv08223 Davidia involucrata HOM05D004106 ORTHO05D004381 3.3e-61 238.8 198 68.2
Gohir.A05G053000 Gossypium hirsutum HOM05D004106 ORTHO05D004381 5.6e-61 238.0 196 66.8
arahy.Tifrunner.gnm1.ann1.J1V5JT Arachis hypogaea HOM05D004106 ORTHO05D004381 7.4e-61 237.7 196 66.3
ClCG06G012460 Citrullus lanatus HOM05D004106 ORTHO05D004381 7.4e-61 237.7 189 69.8
HanXRQChr09g0244601 Helianthus annuus HOM05D004106 ORTHO05D004381 9.6e-61 237.3 190 70.0
ECA240G3283 Erigeron canadensis HOM05D004106 ORTHO05D004381 1.3e-60 236.9 191 68.6
Gohir.D05G054601 Gossypium hirsutum HOM05D004106 ORTHO05D004381 1.6e-60 236.5 196 66.3
Gorai.009G056300 Gossypium raimondii HOM05D004106 ORTHO05D004381 1.6e-60 236.5 196 66.3
HanXRQChr03g0065371 Helianthus annuus HOM05D004106 ORTHO05D004381 1.6e-60 236.5 192 69.3
Lsat_1_v5_gn_7_50001 Lactuca sativa HOM05D004106 ORTHO05D004381 1.6e-60 236.5 204 65.2
Lalb_Chr13g0300831 Lupinus albus HOM05D004106 ORTHO05D004381 2.1e-60 236.1 196 68.9
Prupe.1G394300 Prunus persica HOM05D004106 ORTHO05D004381 2.1e-60 236.1 190 67.9
Ca_21133_v3 Cicer arietinum L. HOM05D004106 ORTHO05D004381 2.8e-60 235.7 160 77.5
GSVIVG01023623001 Vitis vinifera HOM05D004106 ORTHO05D004381 3.7e-60 235.3 196 66.3
Cpa.g.sc46.167 Carica papaya HOM05D004106 ORTHO05D004381 6.2e-60 234.6 192 70.3
PSO384G4038 Papaver somniferum HOM05D004106 ORTHO05D004381 6.2e-60 234.6 198 70.2
SalBow1G1642 Salvia bowleyana HOM05D004106 ORTHO05D004381 6.2e-60 234.6 195 67.2
CANSAT11G1220 Cannabis sativa HOM05D004106 ORTHO05D004381 8.1e-60 234.2 155 80.0
CsaV3_1G029020 Cucumis sativus L. HOM05D004106 ORTHO05D004381 8.1e-60 234.2 189 70.9
PSO339G2511 Papaver somniferum HOM05D004106 ORTHO05D004381 8.1e-60 234.2 198 70.2
THA.LOC104819993 Tarenaya hassleriana HOM05D004106 ORTHO05D004381 1.4e-59 233.4 180 70.0
Sed0000106 Sechium edule HOM05D004106 ORTHO05D004381 1.8e-59 233.0 190 67.9
Medtr0380s0040 Medicago truncatula HOM05D004106 ORTHO05D004381 6.9e-59 231.1 155 76.8
TWI63G0696 Tripterygium wilfordii HOM05D004106 ORTHO05D004381 6.9e-59 231.1 162 73.5
Actinidia14131 Actinidia chinensis HOM05D004106 ORTHO05D004381 9.0e-59 230.7 198 67.2
ATR0580G427 Amborella trichopoda HOM05D004106 ORTHO05D004381 9.0e-59 230.7 196 65.3
MSTRG.1632 Avicennia marina HOM05D004106 ORTHO05D004381 9.0e-59 230.7 188 66.0
CSS0032495 Camellia sinensis var. sinensis HOM05D004106 ORTHO05D004381 9.0e-59 230.7 139 84.9
COL.COLO4_18821 Corchorus olitorius HOM05D004106 ORTHO05D004381 2.6e-58 229.2 196 66.3
MBI14_g09102_MAGBIO Magnolia biondii HOM05D004106 ORTHO05D004381 3.4e-58 228.8 162 75.3
Gohir.A07G027300 Gossypium hirsutum HOM05D004106 ORTHO05D004381 5.8e-58 228.0 196 66.3
Gorai.001G032700 Gossypium raimondii HOM05D004106 ORTHO05D004381 5.8e-58 228.0 196 66.3
MD08G1056000 Malus domestica HOM05D004106 ORTHO05D004381 7.6e-58 227.6 193 66.3
Manes.14G144700 Manihot esculenta HOM05D004106 ORTHO05D004381 7.6e-58 227.6 196 66.3
EL10Ac2g02497 Beta vulgaris HOM05D004106 ORTHO05D004381 1.0e-57 227.3 172 71.5
Prupe.7G264300 Prunus persica HOM05D004106 ORTHO05D004381 3.8e-57 225.3 191 65.4
Lj4g0010746 Lotus japonicus HOM05D004106 ORTHO05D004381 4.9e-57 224.9 196 66.8
Oeu006863.1 Olea europaea HOM05D004106 ORTHO05D004381 4.9e-57 224.9 162 72.8
Eucgr.C02498 Eucalyptus grandis HOM05D004106 ORTHO05D004381 6.5e-57 224.6 178 67.4
TWI34G1622 Tripterygium wilfordii HOM05D004106 ORTHO05D004381 1.1e-56 223.8 162 71.6
Eucgr.C02535 Eucalyptus grandis HOM05D004106 ORTHO05D004381 1.4e-56 223.4 178 67.4
FAN15G2986 Fragaria x ananassa HOM05D004106 ORTHO05D004381 1.4e-56 223.4 195 64.1
FAN27G3303 Fragaria x ananassa HOM05D004106 ORTHO05D004381 1.9e-56 223.0 195 64.1
RcHm_v2.0_Chr6g0299371 Rosa chinensis HOM05D004106 ORTHO05D004381 1.9e-56 223.0 188 67.0
THA.LOC104803919 Tarenaya hassleriana HOM05D004106 ORTHO05D004381 2.5e-56 222.6 140 81.4
Hund02987 Selenicereus undatus HOM05D004106 ORTHO05D004381 3.2e-56 222.2 179 65.4
TPR.G3593 Trifolium pratense HOM05D004106 ORTHO05D004381 3.2e-56 222.2 165 72.1
TWI32G0932 Tripterygium wilfordii HOM05D004106 ORTHO05D004381 3.2e-56 222.2 186 67.2
CiPaw.15G167000 Carya illinoinensis HOM05D004106 ORTHO05D004381 4.2e-56 221.9 162 73.5
FvH4_2g41160 Fragaria vesca HOM05D004106 ORTHO05D004381 4.2e-56 221.9 195 63.6
Psat1g022480 Pisum sativum HOM05D004106 ORTHO05D004381 4.2e-56 221.9 158 74.1
Oeu048547.1 Olea europaea HOM05D004106 ORTHO05D004381 7.1e-56 221.1 139 80.6
HPP92_004701 Vanilla planifolia HOM05D004106 ORTHO05D004381 7.1e-56 221.1 156 73.7
PGR102G1248 Punica granatum HOM05D004106 ORTHO05D004381 1.6e-55 219.9 197 61.4
Nitab4.5_0002011g0110 Nicotiana tabacum HOM05D004106 ORTHO05D004381 6.0e-55 218.0 139 82.0
Nitab4.5_0003563g0010 Nicotiana tabacum HOM05D004106 ORTHO05D004381 1.0e-54 217.2 152 77.0
Os02g0180200 Oryza sativa ssp. japonica HOM05D004106 ORTHO05D004381 1.0e-54 217.2 146 76.7
Lj6g0027633 Lotus japonicus HOM05D004106 ORTHO05D004381 1.3e-54 216.9 157 73.2
Peaxi162Scf00045g02039 Petunia axillaris HOM05D004106 ORTHO05D004381 3.9e-54 215.3 139 80.6
CARHR184720 Cardamine hirsuta HOM05D004106 ORTHO05D004381 8.7e-54 214.2 190 64.7
Hund25620 Selenicereus undatus HOM05D004106 ORTHO05D004381 8.7e-54 214.2 157 72.0
Sp7g28490 Schrenkiella parvula HOM05D004106 ORTHO05D004381 1.1e-53 213.8 140 80.7
Carub.0007s0995 Capsella rubella HOM05D004106 ORTHO05D004381 1.9e-53 213.0 187 66.8
SGA_v2.0_scaffold4G02174 Striga asiatica HOM05D004106 ORTHO05D004381 1.9e-53 213.0 165 71.5
Thhalv10026346m.g Eutrema salsugineum HOM05D004106 ORTHO05D004381 2.5e-53 212.6 140 80.0
A08p19160 Brassica napus HOM05D004106 ORTHO05D004381 3.3e-53 212.2 140 80.0
BraA09t41055Z Brassica rapa HOM05D004106 ORTHO05D004381 3.3e-53 212.2 192 64.6
CDE02G1701 Ceratophyllum demersum HOM05D004106 ORTHO05D004381 3.3e-53 212.2 199 63.3
AL4G14070 Arabidopsis lyrata HOM05D004106 ORTHO05D004381 4.3e-53 211.8 140 80.0
BcaC07g40965 Brassica carinata HOM05D004106 ORTHO05D004381 4.3e-53 211.8 188 63.8
Carub.0004s0318 Capsella rubella HOM05D004106 ORTHO05D004381 4.3e-53 211.8 140 80.0
BraA08t33877Z Brassica rapa HOM05D004106 ORTHO05D004381 5.7e-53 211.5 140 80.0
Medtr4g130730 Medicago truncatula HOM05D004106 ORTHO05D004381 5.7e-53 211.5 158 72.2
Sp4g02930 Schrenkiella parvula HOM05D004106 ORTHO05D004381 5.7e-53 211.5 181 65.7
TPR.G24849 Trifolium pratense HOM05D004106 ORTHO05D004381 5.7e-53 211.5 188 63.8
AT4G30620 Arabidopsis thaliana HOM05D004106 ORTHO05D004381 7.4e-53 211.1 189 66.1
Manes.03G008200 Manihot esculenta HOM05D004106 ORTHO05D004381 7.4e-53 211.1 178 69.1
unitig_749.g13818 Utricularia gibba HOM05D004106 ORTHO05D004381 9.6e-53 210.7 139 79.9
Aa31LG2G19880 Aethionema arabicum HOM05D004106 ORTHO05D004381 1.3e-52 210.3 140 80.0
Solyc08g006780.3 Solanum lycopersicum HOM05D004106 ORTHO05D004381 1.3e-52 210.3 139 80.6
C08p39590 Brassica napus HOM05D004106 ORTHO05D004381 1.6e-52 209.9 189 63.5
BolC8t51532H Brassica oleracea HOM05D004106 ORTHO05D004381 1.6e-52 209.9 189 63.5
Migut.E01458 Erythranthe guttata HOM05D004106 ORTHO05D004381 1.6e-52 209.9 139 77.7
MD15G1041000 Malus domestica HOM05D004106 ORTHO05D004381 1.6e-52 209.9 190 62.6
AT2G24020 Arabidopsis thaliana HOM05D004106 ORTHO05D004381 2.1e-52 209.5 140 79.3
BcaB03g12652 Brassica carinata HOM05D004106 ORTHO05D004381 2.1e-52 209.5 140 80.0
Zm00001eb206700 Zea mays HOM05D004106 ORTHO05D004381 2.1e-52 209.5 139 77.7
A09p56640 Brassica napus HOM05D004106 ORTHO05D004381 2.8e-52 209.1 141 77.3
Sopen08g002730 Solanum pennellii HOM05D004106 ORTHO05D004381 2.8e-52 209.1 139 79.9
CDE05G2988 Ceratophyllum demersum HOM05D004106 ORTHO05D004381 3.7e-52 208.8 139 79.1
AL7G21520 Arabidopsis lyrata HOM05D004106 ORTHO05D004381 6.3e-52 208.0 162 71.0
CAN.G353.7 Capsicum annuum HOM05D004106 ORTHO05D004381 8.2e-52 207.6 139 79.1
PGSC0003DMG400026299 Solanum tuberosum HOM05D004106 ORTHO05D004381 4.1e-51 205.3 152 73.7
BolC3t21168H Brassica oleracea HOM05D004106 ORTHO05D004381 5.3e-51 204.9 191 63.9
Thhalv10000343m.g Eutrema salsugineum HOM05D004106 ORTHO05D004381 5.3e-51 204.9 135 80.7
Sabra18G0090100 Salix brachista HOM05D004106 ORTHO05D004381 1.5e-50 203.4 196 60.2
Psat4g009640 Pisum sativum HOM05D004106 ORTHO05D004381 7.6e-50 201.1 159 67.9
Actinidia23107 Actinidia chinensis HOM05D004106 ORTHO05D004381 1.3e-49 200.3 114 90.4
C03p88620 Brassica napus HOM05D004106 ORTHO05D004381 3.8e-49 198.7 183 63.9
Aqoxy7G02301 Aquilegia oxysepala HOM05D004106 ORTHO05D004381 5.0e-49 198.4 115 88.7
vmacro05152 Vaccinium macrocarpon HOM05D004106 ORTHO05D004381 8.5e-49 197.6 175 62.9
Cfa013048 Carpinus fangiana HOM05D004106 ORTHO05D004381 4.2e-48 195.3 144 73.6
Lalb_Chr12g0198731 Lupinus albus HOM05D004106 ORTHO05D004381 1.2e-47 193.7 112 88.4
MELO3C010214.2 Cucumis melo HOM05D004106 ORTHO05D004381 2.7e-47 192.6 169 66.3
Ah.10g025490 Amaranthus hybridus HOM05D004106 ORTHO05D004381 4.6e-47 191.8 172 65.7
BcaC01g01145 Brassica carinata HOM05D004106 ORTHO05D004381 6.1e-47 191.4 112 86.6
Haze_21409 Corylus avellana HOM05D004106 ORTHO05D004381 7.9e-47 191.0 112 88.4
AUR62024802 Chenopodium quinoa HOM05D004106 ORTHO05D004381 1.8e-46 189.9 114 84.2
AUR62032418 Chenopodium quinoa HOM05D004106 ORTHO05D004381 1.8e-46 189.9 114 84.2
Thecc.09G028700 Theobroma cacao HOM05D004106 ORTHO05D004381 3.0e-46 189.1 198 57.1
Aqoxy7G02464 Aquilegia oxysepala HOM05D004106 ORTHO05D004381 3.9e-46 188.7 136 75.7
Mapoly0031s0030 Marchantia polymorpha HOM05D004106 ORTHO05D004381 1.6e-44 183.3 137 69.3
Haze_19171 Corylus avellana HOM05D004106 ORTHO05D004381 1.1e-43 180.6 112 84.8
CANSAT54G0776 Cannabis sativa HOM05D004106 ORTHO05D004381 2.0e-42 176.4 187 53.5
Pp3c2_35530 Physcomitrium patens HOM05D004106 ORTHO05D004381 2.0e-42 176.4 142 66.2
Hma1.2p1_2680F.1_g326820 Hydrangea macrophylla HOM05D004106 ORTHO05D004381 3.4e-42 175.6 166 62.0
FAN20G0773 Fragaria x ananassa HOM05D004106 ORTHO05D004381 1.0e-41 174.1 195 54.4
Nn8g39925 Nelumbo nucifera HOM05D004106 ORTHO05D004381 1.0e-41 174.1 196 53.6
Pp3c11_2360 Physcomitrium patens HOM05D004106 ORTHO05D004381 2.9e-41 172.6 141 61.7
Aa31LG7G12810 Aethionema arabicum HOM05D004106 ORTHO05D004381 3.8e-41 172.2 160 63.8
SMO364G0386 Selaginella moellendorffii HOM05D004106 ORTHO05D004381 3.8e-41 172.2 108 77.8
Pp3c1_1160 Physcomitrium patens HOM05D004106 ORTHO05D004381 6.5e-41 171.4 140 65.0
Zm00001eb234060 Zea mays HOM05D004106 ORTHO05D004381 3.2e-40 169.1 139 65.5
Rhsim07G0165600 Rhododendron simsii HOM05D004106 ORTHO05D004381 3.0e-38 162.5 347 36.3
Actinidia38669 Actinidia chinensis HOM05D004106 ORTHO05D004381 6.7e-38 161.4 159 59.1
Sc09g0010670 Simmondsia chinensis HOM05D004106 ORTHO05D004381 2.0e-37 159.8 135 63.7
CBR_g54183 Chara braunii HOM05D004106 ORTHO05D004381 5.7e-37 158.3 111 71.2
CBR_g728 Chara braunii HOM05D004106 ORTHO05D004381 7.4e-37 157.9 113 70.8
AagrBONN_evm.TU.Sc2ySwM_228.5744 Anthoceros agrestis HOM05D004106 ORTHO05D004381 3.1e-35 152.5 114 70.2
PRCOL_00004350 Prasinoderma coloniale HOM05D004106 ORTHO05D004381 1.1e-27 127.5 111 57.7
QL02p018811 Quercus lobata HOM05D004106 ORTHO05D004381 2.5e-24 116.3 96 63.5
Gohir.D07G031300 Gossypium hirsutum HOM05D004106 ORTHO05D004381 7.2e-24 114.8 127 55.1
BraA02t07117Z Brassica rapa HOM05D004106 ORTHO05D004381 2.7e-23 112.8 91 68.1
Cre10.g458550 Chlamydomonas reinhardtii HOM05D004106 ORTHO05D004381 2.7e-23 112.8 129 48.8
BcaB05g25007 Brassica carinata HOM05D004106 ORTHO05D004381 1.8e-22 110.2 91 67.0
A02p20860 Brassica napus HOM05D004106 ORTHO05D004381 2.3e-22 109.8 86 68.6
C02p32810 Brassica napus HOM05D004106 ORTHO05D004381 8.8e-22 107.8 87 70.1
Peaxi162Scf00387g00211 Petunia axillaris HOM05D004106 ORTHO05D004381 2.0e-21 106.7 115 54.8
BcaC03g15698 Brassica carinata HOM05D004106 ORTHO05D004381 5.7e-21 105.1 87 69.0
BolC2t09418H Brassica oleracea HOM05D004106 ORTHO05D004381 5.7e-21 105.1 87 69.0
CARHR238490 Cardamine hirsuta HOM05D004106 ORTHO05D004381 3.4e-13 79.3 63 65.1
BcaB01g01386 Brassica carinata HOM05D004106 ORTHO05D005755 1.7e-12 77.0 49 79.6
SEGI_18679 Sequoiadendron giganteum HOM05D004106 ORTHO05D004381 3.7e-12 75.9 44 88.6
Lsat_1_v5_gn_7_47460 Lactuca sativa HOM05D004106 ORTHO05D002137 3.8e-09 65.9 38 86.8
AagrBONN_evm.TU.Sc2ySwM_114.14 Anthoceros agrestis HOM05D010958 ORTHO05D004381 3.0e-06 56.2 116 36.2
AagrBONN_evm.TU.Sc2ySwM_114.15 Anthoceros agrestis HOM05D010958 ORTHO05D004381 3.0e-06 56.2 116 36.2
AagrBONN_evm.TU.Sc2ySwM_340.1461 Anthoceros agrestis HOM05D010958 ORTHO05D004381 3.0e-06 56.2 116 37.1
AagrBONN_evm.TU.Sc2ySwM_344.958 Anthoceros agrestis HOM05D010958 ORTHO05D004381 3.0e-06 56.2 83 45.8
AagrBONN_evm.TU.Sc2ySwM_368.15 Anthoceros agrestis HOM05D010958 ORTHO05D004381 3.0e-06 56.2 116 36.2
AagrBONN_evm.TU.Sc2ySwM_83.9 Anthoceros agrestis HOM05D010958 ORTHO05D004381 3.0e-06 56.2 116 36.2


User provided reference genes

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