Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen12g004700 Solanum pennellii HOM05D004389 ORTHO05D005457 8.1e-97 357.1 179 100.0
Solyc12g009810.3 Solanum lycopersicum HOM05D004389 ORTHO05D005457 2.2e-94 349.0 178 98.3
PGSC0003DMG400030976 Solanum tuberosum HOM05D004389 ORTHO05D005457 1.7e-91 339.3 179 95.0
PGSC0003DMG402007838 Solanum tuberosum HOM05D004389 ORTHO05D005457 3.3e-90 335.1 179 94.4
Nitab4.5_0002329g0100 Nicotiana tabacum HOM05D004389 ORTHO05D005457 1.1e-88 330.1 179 92.7
Nitab4.5_0002659g0010 Nicotiana tabacum HOM05D004389 ORTHO05D005457 4.2e-85 318.2 170 94.7
Nitab4.5_0000401g0080 Nicotiana tabacum HOM05D004389 ORTHO05D005457 6.9e-80 300.8 176 84.7
Cc02_g33710 Coffea canephora HOM05D004389 ORTHO05D005457 1.1e-74 283.5 179 79.3
Dinv23968 Davidia involucrata HOM05D004389 ORTHO05D005457 2.1e-73 279.3 179 78.2
Manes.09G078200 Manihot esculenta HOM05D004389 ORTHO05D005457 3.6e-73 278.5 179 79.3
Lj7A473T46 Lonicera japonica HOM05D004389 ORTHO05D005457 6.2e-73 277.7 178 78.7
Gohir.A08G211800 Gossypium hirsutum HOM05D004389 ORTHO05D005457 1.1e-72 276.9 176 77.8
Peaxi162Scf00523g00530 Petunia axillaris HOM05D004389 ORTHO05D005457 1.1e-72 276.9 174 81.6
Oeu045484.1 Olea europaea HOM05D004389 ORTHO05D005457 4.0e-72 275.0 179 77.7
COL.COLO4_29544 Corchorus olitorius HOM05D004389 ORTHO05D005457 6.9e-72 274.2 179 75.4
Gorai.004G242800 Gossypium raimondii HOM05D004389 ORTHO05D005457 6.9e-72 274.2 176 76.7
Thecc.05G307100 Theobroma cacao HOM05D004389 ORTHO05D005457 6.9e-72 274.2 179 76.0
Duzib177G0146 Durio zibethinus HOM05D004389 ORTHO05D005457 9.0e-72 273.9 179 76.0
Haze_23899 Corylus avellana HOM05D004389 ORTHO05D005457 1.2e-71 273.5 178 77.5
Hma1.2p1_0666F.1_g199560 Hydrangea macrophylla HOM05D004389 ORTHO05D005457 1.2e-71 273.5 179 77.7
Hma1.2p1_1362F.1_g278175 Hydrangea macrophylla HOM05D004389 ORTHO05D005457 1.2e-71 273.5 179 77.7
Sc16g0008410 Simmondsia chinensis HOM05D004389 ORTHO05D005457 1.2e-71 273.5 179 76.5
Actinidia05713 Actinidia chinensis HOM05D004389 ORTHO05D005457 1.5e-71 273.1 179 77.7
Nn8g41138 Nelumbo nucifera HOM05D004389 ORTHO05D005457 1.5e-71 273.1 179 78.2
COL.COLO4_19842 Corchorus olitorius HOM05D004389 ORTHO05D005457 2.0e-71 272.7 179 75.4
Haze_04228 Corylus avellana HOM05D004389 ORTHO05D005457 5.8e-71 271.2 179 77.7
Gohir.D08G228501 Gossypium hirsutum HOM05D004389 ORTHO05D005457 5.8e-71 271.2 176 76.1
PGR031G3032 Punica granatum HOM05D004389 ORTHO05D005457 5.8e-71 271.2 172 80.2
vmacro19638 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 1.7e-70 269.6 180 77.8
CiPaw.07G015300 Carya illinoinensis HOM05D004389 ORTHO05D005457 2.2e-70 269.2 178 76.4
Ciclev10018002m.g Citrus clementina HOM05D004389 ORTHO05D005457 2.2e-70 269.2 179 76.0
CSS0010710 Camellia sinensis var. sinensis HOM05D004389 ORTHO05D005457 2.9e-70 268.9 179 76.0
QL03p004595 Quercus lobata HOM05D004389 ORTHO05D005457 3.8e-70 268.5 178 75.8
CDE02G2165 Ceratophyllum demersum HOM05D004389 ORTHO05D005457 4.9e-70 268.1 168 78.6
Potri.005G036500 Populus trichocarpa HOM05D004389 ORTHO05D005457 4.9e-70 268.1 180 75.6
TAR383G0075 Trochodendron aralioides HOM05D004389 ORTHO05D005457 6.4e-70 267.7 180 76.7
Rhsim05G0143800 Rhododendron simsii HOM05D004389 ORTHO05D005457 8.4e-70 267.3 179 76.0
Eucgr.H04472 Eucalyptus grandis HOM05D004389 ORTHO05D005457 1.1e-69 266.9 179 75.4
Duzib128G0997 Durio zibethinus HOM05D004389 ORTHO05D005457 1.4e-69 266.5 179 73.7
SGA_v2.0_scaffold16G07733 Striga asiatica HOM05D004389 ORTHO05D005457 1.4e-69 266.5 167 80.2
TPR.G33525 Trifolium pratense HOM05D004389 ORTHO05D005457 1.4e-69 266.5 179 76.5
TAR626G0408 Trochodendron aralioides HOM05D004389 ORTHO05D005457 1.4e-69 266.5 179 77.1
MBI16_g00840_MAGBIO Magnolia biondii HOM05D004389 ORTHO05D005457 1.9e-69 266.2 179 72.1
Sabra05G0037000 Salix brachista HOM05D004389 ORTHO05D005457 1.9e-69 266.2 176 76.7
DCAR_008416 Daucus carota HOM05D004389 ORTHO05D005457 4.2e-69 265.0 179 74.9
Potri.013G025600 Populus trichocarpa HOM05D004389 ORTHO05D005457 4.2e-69 265.0 180 74.4
Cpa.g.sc58.76 Carica papaya HOM05D004389 ORTHO05D005457 7.1e-69 264.2 179 72.6
Cfa006553 Carpinus fangiana HOM05D004389 ORTHO05D003318 7.1e-69 264.2 173 76.9
GSVIVG01006266001 Vitis vinifera HOM05D004389 ORTHO05D005457 7.1e-69 264.2 179 74.9
Medtr3g115100 Medicago truncatula HOM05D004389 ORTHO05D005457 1.2e-68 263.5 179 75.4
THA.LOC104805865 Tarenaya hassleriana HOM05D004389 ORTHO05D005457 1.2e-68 263.5 179 73.7
SGA_v2.0_scaffold11G05813 Striga asiatica HOM05D004389 ORTHO05D005457 1.6e-68 263.1 165 80.0
Migut.N00707 Erythranthe guttata HOM05D004389 ORTHO05D005457 2.1e-68 262.7 175 74.9
FvH4_6g05471 Fragaria vesca HOM05D004389 ORTHO05D005457 3.5e-68 261.9 179 74.9
Glyma.05G086900 Glycine max HOM05D004389 ORTHO05D005457 3.5e-68 261.9 169 76.9
LjContig00312_ERROPOS870357g0027537 Lotus japonicus HOM05D004389 ORTHO05D005457 3.5e-68 261.9 179 74.9
EL10Ac4g09330 Beta vulgaris HOM05D004389 ORTHO05D005457 4.6e-68 261.5 179 72.6
FAN05G0231 Fragaria x ananassa HOM05D004389 ORTHO05D005457 4.6e-68 261.5 179 74.9
FAN05G0672 Fragaria x ananassa HOM05D004389 ORTHO05D005457 4.6e-68 261.5 179 74.9
Lj9C683G9 Lonicera japonica HOM05D004389 ORTHO05D005457 4.6e-68 261.5 178 73.6
RcHm_v2.0_Chr3g0454251 Rosa chinensis HOM05D004389 ORTHO05D005457 4.6e-68 261.5 179 74.9
CsaV3_1G039140 Cucumis sativus L. HOM05D004389 ORTHO05D005457 6.0e-68 261.2 179 75.4
Aqoxy7G01925 Aquilegia oxysepala HOM05D004389 ORTHO05D005457 7.9e-68 260.8 177 75.1
Lj1g0012007 Lotus japonicus HOM05D004389 ORTHO05D005457 7.9e-68 260.8 179 74.3
AUR62006921 Chenopodium quinoa HOM05D004389 ORTHO05D005457 1.0e-67 260.4 179 73.7
Aa31sc17G40 Aethionema arabicum HOM05D004389 ORTHO05D005457 1.3e-67 260.0 179 73.7
Ah.04g159790 Amaranthus hybridus HOM05D004389 ORTHO05D005457 1.3e-67 260.0 179 72.6
FAN05G0500 Fragaria x ananassa HOM05D004389 ORTHO05D005457 1.3e-67 260.0 179 75.4
FAN05G1752 Fragaria x ananassa HOM05D004389 ORTHO05D005457 1.3e-67 260.0 179 74.9
Glyma.06G240600 Glycine max HOM05D004389 ORTHO05D005457 1.3e-67 260.0 179 75.4
ECA236G1487 Erigeron canadensis HOM05D004389 ORTHO05D005457 3.0e-67 258.8 169 75.1
FAN18G1342 Fragaria x ananassa HOM05D004389 ORTHO05D005457 3.0e-67 258.8 179 73.2
FAN09G0842 Fragaria x ananassa HOM05D004389 ORTHO05D005457 5.1e-67 258.1 179 74.3
FAN14G5008 Fragaria x ananassa HOM05D004389 ORTHO05D005457 5.1e-67 258.1 179 73.7
TWI73G0431 Tripterygium wilfordii HOM05D004389 ORTHO05D005457 5.1e-67 258.1 179 72.6
Atru.chr2.467 Acer truncatum HOM05D004389 ORTHO05D005457 6.7e-67 257.7 179 73.2
CSS0006579 Camellia sinensis var. sinensis HOM05D004389 ORTHO05D005457 6.7e-67 257.7 179 73.7
AUR62005084 Chenopodium quinoa HOM05D004389 ORTHO05D005457 6.7e-67 257.7 178 72.5
PSO782G4098 Papaver somniferum HOM05D004389 ORTHO05D005457 6.7e-67 257.7 175 74.3
Prupe.6G329200 Prunus persica HOM05D004389 ORTHO05D005457 6.7e-67 257.7 179 72.1
Ciclev10002655m.g Citrus clementina HOM05D004389 ORTHO05D005457 1.1e-66 256.9 179 73.2
Phvul.007G101500 Phaseolus vulgaris HOM05D004389 ORTHO05D005457 1.1e-66 256.9 179 76.0
Aa31sc17G90 Aethionema arabicum HOM05D004389 ORTHO05D005457 1.5e-66 256.5 179 72.6
arahy.Tifrunner.gnm1.ann1.95MSG7 Arachis hypogaea HOM05D004389 ORTHO05D005457 1.9e-66 256.1 180 72.8
Sed0018697 Sechium edule HOM05D004389 ORTHO05D005457 1.9e-66 256.1 176 75.6
AUR62000890 Chenopodium quinoa HOM05D004389 ORTHO05D005457 2.5e-66 255.8 179 72.6
ClCG03G016830 Citrullus lanatus HOM05D004389 ORTHO05D005457 2.5e-66 255.8 171 77.8
MD04G1208300 Malus domestica HOM05D004389 ORTHO05D005457 2.5e-66 255.8 175 74.3
MELO3C015339.2 Cucumis melo HOM05D004389 ORTHO05D005457 4.3e-66 255.0 179 74.3
HanXRQChr14g0460141 Helianthus annuus HOM05D004389 ORTHO05D005457 4.3e-66 255.0 169 74.6
PSO063G2909 Papaver somniferum HOM05D004389 ORTHO05D005457 4.3e-66 255.0 175 74.3
CANSAT21G2311 Cannabis sativa HOM05D004389 ORTHO05D005457 5.6e-66 254.6 179 73.7
HPP92_010418 Vanilla planifolia HOM05D004389 ORTHO05D005457 2.1e-65 252.7 169 74.6
CANSAT21G1920 Cannabis sativa HOM05D004389 ORTHO05D005457 3.7e-65 251.9 179 72.6
Sabra13G0026700 Salix brachista HOM05D004389 ORTHO05D005457 3.7e-65 251.9 207 67.1
BcaNung00158 Brassica carinata HOM05D004389 ORTHO05D005457 1.4e-64 250.0 169 74.0
FvH4_5g27531 Fragaria vesca HOM05D004389 ORTHO05D005457 2.4e-64 249.2 171 73.7
BcaC09g50404 Brassica carinata HOM05D004389 ORTHO05D005457 5.3e-64 248.1 169 73.4
Medtr3g096610 Medicago truncatula HOM05D004389 ORTHO05D005457 9.0e-64 247.3 171 73.7
BcaB03g14176 Brassica carinata HOM05D004389 ORTHO05D005457 1.2e-63 246.9 178 71.9
A01p20570 Brassica napus HOM05D004389 ORTHO05D005457 1.2e-63 246.9 169 73.4
BolC1t02532H Brassica oleracea HOM05D004389 ORTHO05D005457 1.2e-63 246.9 169 72.8
Zm00001eb272600 Zea mays HOM05D004389 ORTHO05D005457 1.2e-63 246.9 169 73.4
C01p25870 Brassica napus HOM05D004389 ORTHO05D005457 1.5e-63 246.5 169 73.4
BraA01t01985Z Brassica rapa HOM05D004389 ORTHO05D005457 2.0e-63 246.1 169 73.4
CARHR223240 Cardamine hirsuta HOM05D004389 ORTHO05D005457 2.0e-63 246.1 169 72.2
vmacro08924 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 2.0e-63 246.1 221 62.0
Sp7g15350 Schrenkiella parvula HOM05D004389 ORTHO05D005457 4.5e-63 245.0 175 70.9
AT4G16710 Arabidopsis thaliana HOM05D004389 ORTHO05D005457 1.3e-62 243.4 175 69.7
Hund07052 Selenicereus undatus HOM05D004389 ORTHO05D005457 2.2e-62 242.7 188 68.1
unitig_747.g21568 Utricularia gibba HOM05D004389 ORTHO05D005457 2.2e-62 242.7 168 73.8
GSVIVG01000019001 Vitis vinifera HOM05D004389 ORTHO05D005457 2.2e-62 242.7 157 79.0
Zm00001eb264580 Zea mays HOM05D004389 ORTHO05D005457 2.9e-62 242.3 175 71.4
Carub.0007s2468 Capsella rubella HOM05D004389 ORTHO05D005457 4.9e-62 241.5 175 69.1
AL7G38020 Arabidopsis lyrata HOM05D004389 ORTHO05D005457 3.2e-61 238.8 176 68.2
TWI53G0891 Tripterygium wilfordii HOM05D004389 ORTHO05D005457 5.5e-61 238.0 176 68.2
AUR62000567 Chenopodium quinoa HOM05D004389 ORTHO05D005457 7.1e-61 237.7 160 73.8
ATR0626G001 Amborella trichopoda HOM05D004389 ORTHO05D005457 1.2e-60 236.9 179 66.5
Thhalv10026361m.g Eutrema salsugineum HOM05D004389 ORTHO05D005457 1.2e-60 236.9 175 69.1
Lsat_1_v5_gn_7_96081 Lactuca sativa HOM05D004389 ORTHO05D005457 1.2e-60 236.9 175 70.3
Rhsim05G0010600 Rhododendron simsii HOM05D004389 ORTHO05D005457 1.9e-58 229.6 212 61.3
HanXRQChr04g0126711 Helianthus annuus HOM05D004389 ORTHO05D005457 6.2e-57 224.6 178 66.9
Peaxi162Scf02135g00022 Petunia axillaris HOM05D004389 ORTHO05D005457 8.2e-57 224.2 173 71.7
Psat0s2070g0160 Pisum sativum HOM05D004389 ORTHO05D005457 1.2e-55 220.3 150 75.3
SEGI_15909 Sequoiadendron giganteum HOM05D004389 ORTHO05D005457 2.0e-55 219.5 176 63.1
Psat0s1802g0120 Pisum sativum HOM05D004389 ORTHO05D005457 3.4e-55 218.8 150 74.7
RcHm_v2.0_Chr7g0218901 Rosa chinensis HOM05D004389 ORTHO05D005457 1.4e-53 213.4 146 73.3
Lalb_Chr05g0219701 Lupinus albus HOM05D004389 ORTHO05D005457 1.8e-51 206.5 179 62.0
CAN.G551.74 Capsicum annuum HOM05D004389 ORTHO05D005457 6.5e-46 188.0 105 91.4
AagrBONN_evm.TU.Sc2ySwM_117.3666 Anthoceros agrestis HOM05D004389 ORTHO05D005457 3.2e-45 185.7 162 55.6
Dinv40263 Davidia involucrata HOM05D004389 ORTHO05D005457 2.7e-44 182.6 120 78.3
vmacro22564 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 1.8e-43 179.9 170 59.4
AagrBONN_evm.TU.Sc2ySwM_344.4143 Anthoceros agrestis HOM05D007251 ORTHO05D009266 2.3e-43 179.5 162 53.7
Aqoxy4G02160 Aquilegia oxysepala HOM05D004389 ORTHO05D005457 8.8e-43 177.6 115 80.0
SMO171G0140 Selaginella moellendorffii HOM05D004389 ORTHO05D005457 1.5e-42 176.8 165 52.7
Os02g0467700 Oryza sativa ssp. japonica HOM05D004389 ORTHO05D005457 6.3e-41 171.4 115 74.8
Prupe.5G030200 Prunus persica HOM05D004389 ORTHO05D005457 6.3e-41 171.4 114 78.9
Mapoly0013s0083 Marchantia polymorpha HOM05D004389 ORTHO05D005457 1.1e-40 170.6 167 52.1
Pp3c11_4930 Physcomitrium patens HOM05D004389 ORTHO05D005457 1.3e-38 163.7 163 51.5
vmacro15018 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 3.6e-36 155.6 158 55.1
Cre13.g585850 Chlamydomonas reinhardtii HOM05D004389 ORTHO05D005457 7.9e-36 154.5 173 50.9
PRCOL_00003734 Prasinoderma coloniale HOM05D004389 ORTHO05D005457 3.9e-35 152.1 159 52.2
vmacro22211 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 8.8e-35 151.0 192 51.0
Nitab4.5_0006964g0010 Nicotiana tabacum HOM05D004389 ORTHO05D005457 7.4e-34 147.9 93 79.6
MCO09G816 Micromonas commoda HOM05D004389 ORTHO05D005457 9.7e-34 147.5 162 48.1
CBR_g24390 Chara braunii HOM05D004389 ORTHO05D005457 1.1e-32 144.1 222 40.5
Zm00001eb058290 Zea mays HOM05D004389 ORTHO05D005457 1.8e-32 143.3 84 82.1
Ca_16978_v3 Cicer arietinum L. HOM05D004389 ORTHO05D005457 3.5e-31 139.0 86 79.1
TPR.G33563 Trifolium pratense HOM05D004389 ORTHO05D005457 2.9e-30 136.0 83 79.5
RhsimUnG0192500 Rhododendron simsii HOM05D004389 ORTHO05D005457 1.8e-27 126.7 98 69.4
Aqoxy5G02271 Aquilegia oxysepala HOM05D004389 ORTHO05D005457 2.3e-27 126.3 94 70.2
SHI18162 Sapria himalayana HOM05D004389 ORTHO05D005457 6.3e-25 118.2 135 50.4
TPR.G30972 Trifolium pratense HOM05D004389 ORTHO05D005457 7.0e-24 114.8 86 67.4
FvH4_6g10990 Fragaria vesca HOM05D004389 ORTHO05D005457 4.5e-23 112.1 97 61.9
MD15G1188200 Malus domestica HOM05D004389 ORTHO05D005457 1.0e-22 110.9 108 59.3
QL07p009462 Quercus lobata HOM05D004389 ORTHO05D005457 5.5e-21 105.1 75 70.7
Zm00001eb380920 Zea mays HOM05D004389 ORTHO05D005457 1.6e-20 103.6 85 60.0
Actinidia39666 Actinidia chinensis HOM05D004389 ORTHO05D056204 8.3e-17 91.3 138 44.2
vmacro15154 Vaccinium macrocarpon HOM05D004389 ORTHO05D022937 5.0e-14 82.0 57 68.4
Cfa025624 Carpinus fangiana HOM05D004389 ORTHO05D125512 9.4e-13 77.8 218 32.1
SHI18161 Sapria himalayana HOM05D004389 ORTHO05D005457 1.4e-11 73.9 57 56.1
vmacro17239 Vaccinium macrocarpon HOM05D040504 ORTHO05D426804 3.4e-10 69.3 146 34.2
HPP92_010328 Vanilla planifolia HOM05D004389 ORTHO05D022937 2.8e-09 66.2 42 66.7
QL07p009230 Quercus lobata HOM05D004389 ORTHO05D005457 1.1e-08 64.3 85 45.9
Medtr6g452950 Medicago truncatula HOM05D029366 ORTHO05D022937 5.4e-08 62.0 44 63.6
CDE04G0800 Ceratophyllum demersum HOM05D000328 ORTHO05D000191 1.0e-06 57.8 37 73.0


User provided reference genes

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