Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen12g004430 Solanum pennellii HOM05D005825 ORTHO05D006483 2.5e-181 638.6 321 100.0
Solyc12g009430.2 Solanum lycopersicum HOM05D005825 ORTHO05D006483 9.5e-181 636.7 321 99.4
PGSC0003DMG400002918 Solanum tuberosum HOM05D005825 ORTHO05D006483 3.6e-172 608.2 315 96.8
CAN.G1591.11 Capsicum annuum HOM05D005825 ORTHO05D006483 3.6e-164 581.6 322 91.0
Peaxi162Scf00157g01524 Petunia axillaris HOM05D005825 ORTHO05D006483 5.8e-162 574.3 322 90.7
Nitab4.5_0014105g0010 Nicotiana tabacum HOM05D005825 ORTHO05D006483 7.3e-157 557.4 314 91.4
Nitab4.5_0002658g0050 Nicotiana tabacum HOM05D005825 ORTHO05D006483 6.2e-156 554.3 314 91.1
Oeu007499.1 Olea europaea HOM05D005825 ORTHO05D006483 1.9e-144 516.2 334 79.6
MSTRG.19597 Avicennia marina HOM05D005825 ORTHO05D006483 3.6e-140 501.9 324 77.8
SalBow3G4290 Salvia bowleyana HOM05D005825 ORTHO05D006483 2.9e-137 492.3 323 76.5
Migut.B01717 Erythranthe guttata HOM05D005825 ORTHO05D006483 2.3e-134 482.6 329 74.8
DCAR_009187 Daucus carota HOM05D005825 ORTHO05D006483 4.8e-132 474.9 323 74.3
SGA_v2.0_scaffold299G47720 Striga asiatica HOM05D005825 ORTHO05D006483 4.8e-132 474.9 321 73.8
vmacro20556 Vaccinium macrocarpon HOM05D005825 ORTHO05D006483 2.4e-131 472.6 324 73.5
Dinv36528 Davidia involucrata HOM05D005825 ORTHO05D006483 6.9e-131 471.1 324 74.1
Lsat_1_v5_gn_8_58680 Lactuca sativa HOM05D005825 ORTHO05D006483 2.0e-130 469.5 322 73.9
Ca_21683_v3 Cicer arietinum L. HOM05D005825 ORTHO05D006483 5.8e-130 468.0 324 72.5
Lalb_Chr13g0301881 Lupinus albus HOM05D005825 ORTHO05D006483 5.4e-128 461.5 324 72.8
arahy.Tifrunner.gnm1.ann1.1NB5KJ Arachis hypogaea HOM05D005825 ORTHO05D006483 1.2e-127 460.3 322 71.1
arahy.Tifrunner.gnm1.ann1.9UEQ51 Arachis hypogaea HOM05D005825 ORTHO05D006483 1.6e-127 459.9 323 69.7
Hund09127 Selenicereus undatus HOM05D005825 ORTHO05D006483 4.6e-127 458.4 322 72.4
CSS0017066 Camellia sinensis var. sinensis HOM05D005825 ORTHO05D006483 6.0e-127 458.0 320 70.9
Nn2g12789 Nelumbo nucifera HOM05D005825 ORTHO05D006483 6.0e-127 458.0 327 70.6
Rhsim01G0070600 Rhododendron simsii HOM05D005825 ORTHO05D006483 2.3e-126 456.1 327 70.3
PSO675G5818 Papaver somniferum HOM05D005825 ORTHO05D006483 3.9e-126 455.3 322 70.2
Cpa.g.sc75.29 Carica papaya HOM05D005825 ORTHO05D006483 8.7e-126 454.1 321 69.8
EL10Ac8g18654 Beta vulgaris HOM05D005825 ORTHO05D006483 1.1e-125 453.8 324 70.4
CSS0027185 Camellia sinensis var. sinensis HOM05D005825 ORTHO05D006483 1.1e-125 453.8 320 70.3
MELO3C004508.2 Cucumis melo HOM05D005825 ORTHO05D006483 1.1e-125 453.8 321 70.7
Hma1.2p1_0018F.1_g012420 Hydrangea macrophylla HOM05D005825 ORTHO05D006483 1.1e-125 453.8 323 72.4
Sed0008025 Sechium edule HOM05D005825 ORTHO05D006483 1.1e-125 453.8 323 70.9
Hma1.2p1_2368F.1_g320700 Hydrangea macrophylla HOM05D005825 ORTHO05D006483 2.5e-125 452.6 323 72.1
Psat4g040200 Pisum sativum HOM05D005825 ORTHO05D006483 2.5e-125 452.6 324 70.1
Glyma.13G167400 Glycine max HOM05D005825 ORTHO05D006483 3.3e-125 452.2 324 70.4
ClCG11G003030 Citrullus lanatus HOM05D005825 ORTHO05D006483 9.6e-125 450.7 321 70.7
Atru.chr7.1162 Acer truncatum HOM05D005825 ORTHO05D006483 1.3e-124 450.3 322 71.1
CsaV3_2G002850 Cucumis sativus L. HOM05D005825 ORTHO05D006483 1.3e-124 450.3 321 70.7
PSO782G3266 Papaver somniferum HOM05D005825 ORTHO05D006483 1.6e-124 449.9 322 69.9
DCAR_017816 Daucus carota HOM05D005825 ORTHO05D006483 2.1e-124 449.5 358 66.8
Ciclev10008932m.g Citrus clementina HOM05D005825 ORTHO05D006483 2.8e-124 449.1 320 70.6
Actinidia40470 Actinidia chinensis HOM05D005825 ORTHO05D006483 6.2e-124 448.0 321 70.1
CANSAT11G1244 Cannabis sativa HOM05D005825 ORTHO05D006483 6.2e-124 448.0 325 69.2
Lalb_Chr12g0197941 Lupinus albus HOM05D005825 ORTHO05D006483 6.2e-124 448.0 323 70.6
Medtr4g114160 Medicago truncatula HOM05D005825 ORTHO05D006483 8.1e-124 447.6 324 70.4
Phvul.003G164300 Phaseolus vulgaris HOM05D005825 ORTHO05D006483 1.1e-123 447.2 324 69.8
TAR625G0074 Trochodendron aralioides HOM05D005825 ORTHO05D006483 1.1e-123 447.2 322 70.5
Lj4g0013357 Lotus japonicus HOM05D005825 ORTHO05D006483 1.8e-123 446.4 324 70.7
PGR142G1018 Punica granatum HOM05D005825 ORTHO05D006483 1.8e-123 446.4 327 69.4
Sabra02G0094300 Salix brachista HOM05D005825 ORTHO05D006483 2.4e-123 446.0 320 70.3
Manes.06G058801 Manihot esculenta HOM05D005825 ORTHO05D006483 3.1e-123 445.7 261 82.8
Rhsim01G0071200 Rhododendron simsii HOM05D005825 ORTHO05D006483 2.6e-122 442.6 328 69.5
arahy.Tifrunner.gnm1.ann1.85XGXJ Arachis hypogaea HOM05D005825 ORTHO05D006483 5.8e-122 441.4 323 67.8
TWI34G0282 Tripterygium wilfordii HOM05D005825 ORTHO05D006483 5.8e-122 441.4 328 69.8
unitig_748.g8100 Utricularia gibba HOM05D005825 ORTHO05D006483 9.9e-122 440.7 327 70.3
VMungo1215G3451 Vigna mungo HOM05D005825 ORTHO05D006483 9.9e-122 440.7 322 68.9
Aa31LG5G9110 Aethionema arabicum HOM05D003776 ORTHO05D004459 1.3e-121 440.3 325 68.9
Cfa003372 Carpinus fangiana HOM05D005825 ORTHO05D006483 1.3e-121 440.3 323 68.4
Aqoxy5G01398 Aquilegia oxysepala HOM05D005825 ORTHO05D006483 2.2e-121 439.5 320 69.1
Sc08g0006620 Simmondsia chinensis HOM05D005825 ORTHO05D006483 2.2e-121 439.5 327 68.2
Thecc.09G126400 Theobroma cacao HOM05D005825 ORTHO05D006483 2.2e-121 439.5 325 68.0
MD02G1032800 Malus domestica HOM05D005825 ORTHO05D006483 2.9e-121 439.1 325 68.0
arahy.Tifrunner.gnm1.ann1.R6UVTB Arachis hypogaea HOM05D005825 ORTHO05D006483 3.8e-121 438.7 323 67.5
AL4G19680 Arabidopsis lyrata HOM05D005825 ORTHO05D006483 6.4e-121 438.0 323 68.7
Potri.014G017900 Populus trichocarpa HOM05D005825 ORTHO05D006483 1.4e-120 436.8 320 70.6
HanXRQChr17g0537731 Helianthus annuus HOM05D005825 ORTHO05D006483 4.2e-120 435.3 320 69.4
Lj2C942T8 Lonicera japonica HOM05D005825 ORTHO05D006483 4.2e-120 435.3 351 65.8
Gorai.010G064100 Gossypium raimondii HOM05D005825 ORTHO05D006483 5.5e-120 434.9 325 68.3
AUR62013360 Chenopodium quinoa HOM05D005825 ORTHO05D006483 1.2e-119 433.7 278 76.3
Gohir.D06G054601 Gossypium hirsutum HOM05D005825 ORTHO05D006483 1.6e-119 433.3 325 68.0
Carub.0004s0696 Capsella rubella HOM05D005825 ORTHO05D006483 2.7e-119 432.6 320 67.5
Thhalv10002044m.g Eutrema salsugineum HOM05D005825 ORTHO05D006483 3.5e-119 432.2 320 66.9
MBI16_g24711_MAGBIO Magnolia biondii HOM05D005825 ORTHO05D006483 3.5e-119 432.2 320 67.5
Sabra14G0011800 Salix brachista HOM05D005825 ORTHO05D006483 3.5e-119 432.2 320 70.0
Eucgr.C01173 Eucalyptus grandis HOM05D005825 ORTHO05D006483 4.6e-119 431.8 327 68.2
Sp4g09150 Schrenkiella parvula HOM05D005825 ORTHO05D006483 4.6e-119 431.8 322 67.1
Duzib168G1077 Durio zibethinus HOM05D005825 ORTHO05D006483 7.9e-119 431.0 326 66.6
THA.LOC104815280 Tarenaya hassleriana HOM05D005825 ORTHO05D006483 7.9e-119 431.0 323 65.9
AT2G26680 Arabidopsis thaliana HOM05D005825 ORTHO05D006483 3.0e-118 429.1 323 67.2
Ah.09g226210 Amaranthus hybridus HOM05D005825 ORTHO05D006483 1.5e-117 426.8 323 66.6
A04p21320 Brassica napus HOM05D005825 ORTHO05D006483 1.5e-117 426.8 330 66.1
BraA04t17698Z Brassica rapa HOM05D005825 ORTHO05D006483 1.5e-117 426.8 330 66.1
Gohir.A06G056101 Gossypium hirsutum HOM05D005825 ORTHO05D006483 3.3e-117 425.6 325 67.7
CiPaw.03G244100 Carya illinoinensis HOM05D005825 ORTHO05D006483 5.6e-117 424.9 326 67.2
HanXRQChr17g0537711 Helianthus annuus HOM05D005825 ORTHO05D006483 1.3e-116 423.7 320 67.5
Prupe.7G242700 Prunus persica HOM05D005825 ORTHO05D006483 2.8e-116 422.5 323 66.6
BcaB06g28186 Brassica carinata HOM05D005825 ORTHO05D006483 1.4e-115 420.2 323 65.6
C04p57230 Brassica napus HOM05D005825 ORTHO05D006483 1.8e-115 419.9 331 65.6
FAN19G0135 Fragaria x ananassa HOM05D005825 ORTHO05D006483 4.0e-115 418.7 325 66.5
FvH4_1g03280 Fragaria vesca HOM05D005825 ORTHO05D006483 6.9e-115 417.9 325 66.2
FAN23G1198 Fragaria x ananassa HOM05D005825 ORTHO05D006483 6.9e-115 417.9 325 66.2
Thhalv10023596m.g Eutrema salsugineum HOM05D005825 ORTHO05D006483 1.2e-114 417.2 320 66.6
Lj2A929T15 Lonicera japonica HOM05D005825 ORTHO05D006483 1.2e-114 417.2 351 63.8
FAN26G2420 Fragaria x ananassa HOM05D005825 ORTHO05D006483 2.0e-114 416.4 325 65.8
BolC4t27250H Brassica oleracea HOM05D005825 ORTHO05D006483 2.6e-114 416.0 328 64.9
FAN28G2006 Fragaria x ananassa HOM05D005825 ORTHO05D006483 1.0e-113 414.1 327 65.7
RcHm_v2.0_Chr2g0088431 Rosa chinensis HOM05D005825 ORTHO05D006483 1.0e-113 414.1 330 65.8
BcaC02g08209 Brassica carinata HOM05D005825 ORTHO05D006483 2.2e-113 412.9 329 64.4
CDE04G1080 Ceratophyllum demersum HOM05D005825 ORTHO05D006483 8.4e-113 411.0 326 65.3
HPP92_017605 Vanilla planifolia HOM05D005825 ORTHO05D006483 3.3e-109 399.1 330 62.1
Os03g0566600 Oryza sativa ssp. japonica HOM05D005825 ORTHO05D006483 2.8e-108 396.0 262 74.0
HanXRQChr06g0180341 Helianthus annuus HOM05D005825 ORTHO05D006483 1.1e-107 394.0 287 69.3
Zm00001eb043030 Zea mays HOM05D005825 ORTHO05D006483 4.1e-107 392.1 264 72.7
Haze_25579 Corylus avellana HOM05D005825 ORTHO05D006483 2.5e-104 382.9 324 61.7
ATR0225G021 Amborella trichopoda HOM05D005825 ORTHO05D006483 5.5e-104 381.7 261 71.6
QL10p023454 Quercus lobata HOM05D005825 ORTHO05D006483 4.6e-103 378.6 500 45.4
SHI03392 Sapria himalayana HOM05D005825 ORTHO05D006483 1.4e-102 377.1 383 52.5
AUR62011128 Chenopodium quinoa HOM05D005825 ORTHO05D006483 3.9e-102 375.6 322 61.2
TPR.G10697 Trifolium pratense HOM05D005825 ORTHO05D006483 1.1e-83 314.3 185 84.9
ECA246G2031 Erigeron canadensis HOM05D000004 ORTHO05D000002 2.4e-83 313.2 208 76.4
AagrBONN_evm.TU.Sc2ySwM_344.1792 Anthoceros agrestis HOM05D005825 ORTHO05D006483 5.3e-83 312.0 263 58.2
Potri.002G119800 Populus trichocarpa HOM05D005825 ORTHO05D006483 5.3e-83 312.0 191 81.2
SMO147G0115 Selaginella moellendorffii HOM05D005825 ORTHO05D006483 5.0e-81 305.4 257 57.2
Cc06_g08520 Coffea canephora HOM05D005825 ORTHO05D006483 6.1e-79 298.5 170 86.5
CiPaw.04G171000 Carya illinoinensis HOM05D005825 ORTHO05D006483 6.8e-78 295.0 178 81.5
GSVIVG01015529001 Vitis vinifera HOM05D005825 ORTHO05D006483 2.6e-77 293.1 167 86.2
Glyma.17G115000 Glycine max HOM05D005825 ORTHO05D006483 2.8e-76 289.7 178 80.9
CARHR118580 Cardamine hirsuta HOM05D005825 ORTHO05D006483 4.7e-63 245.7 205 59.0
Ca_13270_v3 Cicer arietinum L. HOM05D005825 ORTHO05D006483 2.5e-56 223.4 184 59.8
Actinidia21988 Actinidia chinensis HOM05D005825 ORTHO05D006483 9.8e-53 211.5 122 86.1
Ca_14592_v3 Cicer arietinum L. HOM05D005825 ORTHO05D006483 4.9e-52 209.1 216 53.2
Eucgr.G00617 Eucalyptus grandis HOM05D005825 ORTHO05D006483 1.5e-48 197.6 121 81.8
Eucgr.B02426 Eucalyptus grandis HOM05D005825 ORTHO05D006483 1.2e-47 194.5 121 80.2
VMungo0647G0470 Vigna mungo HOM05D005825 ORTHO05D006483 1.1e-46 191.4 163 58.9
CARHR118590 Cardamine hirsuta HOM05D005825 ORTHO05D006483 6.8e-46 188.7 119 77.3
Eucgr.C03225 Eucalyptus grandis HOM05D005825 ORTHO05D006483 5.4e-43 179.1 115 77.4
Eucgr.E01840 Eucalyptus grandis HOM05D005825 ORTHO05D006483 6.8e-38 162.2 121 71.9
Eucgr.B02447 Eucalyptus grandis HOM05D005825 ORTHO05D006483 2.7e-34 150.2 95 81.1
TAR381G0761 Trochodendron aralioides HOM05D005825 ORTHO05D006483 6.6e-33 145.6 154 52.6
CAN.G204.2 Capsicum annuum HOM05D005825 ORTHO05D006483 3.5e-26 123.2 73 86.3
SalBow6G2945 Salvia bowleyana HOM05D000060 ORTHO05D000082 1.8e-22 110.9 138 47.8
VMungo0464G1687 Vigna mungo HOM05D005825 ORTHO05D006483 1.4e-11 74.7 48 77.1
Zm00001eb219900 Zea mays HOM05D005825 ORTHO05D006483 7.1e-11 72.4 160 33.1
MCO17G084 Micromonas commoda HOM05D051517 ORTHO05D006483 1.2e-10 71.6 174 28.2
Cre02.g103000 Chlamydomonas reinhardtii HOM05D024924 ORTHO05D006483 1.0e-09 68.6 145 32.4
Cre12.g488550 Chlamydomonas reinhardtii HOM05D024924 ORTHO05D006483 1.8e-09 67.8 149 33.6
vmacro22117 Vaccinium macrocarpon HOM05D003776 ORTHO05D004459 1.6e-07 61.2 71 53.5
Cre12.g552600 Chlamydomonas reinhardtii HOM05D024924 ORTHO05D006483 2.1e-07 60.8 144 31.9
Cre09.g386747 Chlamydomonas reinhardtii HOM05D005825 ORTHO05D006483 8.1e-07 58.9 186 29.0
PRCOL_00003044 Prasinoderma coloniale HOM05D024924 ORTHO05D006483 3.1e-06 57.0 152 28.3


User provided reference genes

Program Settings