Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen12g004030 Solanum pennellii HOM05D002335 ORTHO05D006692 1.1e-107 393.3 187 100.0
PGSC0003DMG400000324 Solanum tuberosum HOM05D002335 ORTHO05D006692 9.3e-104 380.2 207 89.9
Solyc07g041780.3 Solanum lycopersicum HOM05D002335 ORTHO05D006692 8.7e-94 347.1 187 87.2
PGSC0003DMG400013000 Solanum tuberosum HOM05D002335 ORTHO05D006692 1.6e-92 342.8 187 86.1
Sopen07g021270 Solanum pennellii HOM05D002335 ORTHO05D006692 2.8e-92 342.0 187 86.6
Peaxi162Scf00127g00206 Petunia axillaris HOM05D002335 ORTHO05D006692 4.1e-91 338.2 187 82.9
Ciclev10009634m.g Citrus clementina HOM05D002335 ORTHO05D006692 1.0e-89 333.6 185 81.6
Solyc12g009080.2 Solanum lycopersicum HOM05D002335 ORTHO05D006692 5.0e-89 331.3 157 98.7
TWI34G0950 Tripterygium wilfordii HOM05D002335 ORTHO05D006692 3.2e-88 328.6 185 81.6
GSVIVG01015085001 Vitis vinifera HOM05D002335 ORTHO05D006692 1.6e-87 326.2 177 82.5
Hma1.2p1_0169F.1_g074550 Hydrangea macrophylla HOM05D002335 ORTHO05D006692 6.1e-87 324.3 186 81.7
Hma1.2p1_0169F.1_g074601 Hydrangea macrophylla HOM05D002335 ORTHO05D006692 6.1e-87 324.3 186 81.7
CSS0035766 Camellia sinensis var. sinensis HOM05D002335 ORTHO05D006692 1.0e-86 323.6 185 78.9
CSS0046237 Camellia sinensis var. sinensis HOM05D002335 ORTHO05D006692 1.0e-86 323.6 185 78.9
QL11p000707 Quercus lobata HOM05D002335 ORTHO05D006692 5.1e-86 321.2 175 82.3
SGA_v2.0_scaffold308G48074 Striga asiatica HOM05D002335 ORTHO05D006692 5.1e-86 321.2 177 82.5
Oeu049119.1 Olea europaea HOM05D002335 ORTHO05D006692 1.9e-85 319.3 185 78.9
Potri.018G065800 Populus trichocarpa HOM05D002335 ORTHO05D006692 1.9e-85 319.3 177 81.4
Actinidia29931 Actinidia chinensis HOM05D002335 ORTHO05D006692 2.5e-85 318.9 177 79.7
Cfa002991 Carpinus fangiana HOM05D002335 ORTHO05D006692 2.5e-85 318.9 177 80.8
Haze_26010 Corylus avellana HOM05D002335 ORTHO05D006692 2.5e-85 318.9 177 80.8
MSTRG.10511 Avicennia marina HOM05D002335 ORTHO05D006692 3.3e-85 318.5 179 81.0
Manes.03G040300 Manihot esculenta HOM05D002335 ORTHO05D006692 3.3e-85 318.5 177 79.1
TAR626G0579 Trochodendron aralioides HOM05D002335 ORTHO05D006692 3.3e-85 318.5 185 76.8
CAN.G1963.2 Capsicum annuum HOM05D002335 ORTHO05D006692 4.3e-85 318.2 157 93.6
Eucgr.C03511 Eucalyptus grandis HOM05D002335 ORTHO05D006692 4.3e-85 318.2 179 79.3
Lj4g0006964 Lotus japonicus HOM05D002335 ORTHO05D006692 5.7e-85 317.8 177 80.2
SalBow5G0979 Salvia bowleyana HOM05D002335 ORTHO05D006692 9.7e-85 317.0 179 80.4
SalBow5G2105 Salvia bowleyana HOM05D002335 ORTHO05D006692 9.7e-85 317.0 179 80.4
Nn6g35620 Nelumbo nucifera HOM05D002335 ORTHO05D006692 1.3e-84 316.6 185 77.3
Sc18g0002530 Simmondsia chinensis HOM05D002335 ORTHO05D006692 1.3e-84 316.6 177 80.2
EL10Ac8g19062 Beta vulgaris HOM05D002335 ORTHO05D006692 1.6e-84 316.2 177 80.2
Cpa.g.sc28.42 Carica papaya HOM05D002335 ORTHO05D006692 1.6e-84 316.2 196 74.5
Prupe.7G199200 Prunus persica HOM05D002335 ORTHO05D006692 1.6e-84 316.2 177 79.1
Phvul.003G130900 Phaseolus vulgaris HOM05D002335 ORTHO05D006692 2.8e-84 315.5 177 79.1
AUR62025248 Chenopodium quinoa HOM05D002335 ORTHO05D006692 3.7e-84 315.1 175 80.0
AUR62028936 Chenopodium quinoa HOM05D002335 ORTHO05D006692 3.7e-84 315.1 175 80.0
Eucgr.C03267 Eucalyptus grandis HOM05D002335 ORTHO05D006692 3.7e-84 315.1 177 79.1
Glyma.17G049400 Glycine max HOM05D002335 ORTHO05D006692 8.2e-84 313.9 185 76.8
Glyma.13G110300 Glycine max HOM05D002335 ORTHO05D006692 1.1e-83 313.5 177 79.1
Aqoxy7G04078 Aquilegia oxysepala HOM05D002335 ORTHO05D006692 1.8e-83 312.8 180 75.0
CiPaw.04G143300 Carya illinoinensis HOM05D002335 ORTHO05D006692 1.8e-83 312.8 179 77.7
Eucgr.C03501 Eucalyptus grandis HOM05D002335 ORTHO05D006692 1.8e-83 312.8 179 78.2
Dinv25560 Davidia involucrata HOM05D002335 ORTHO05D006692 2.4e-83 312.4 185 77.8
Migut.L01564 Erythranthe guttata HOM05D002335 ORTHO05D006692 2.4e-83 312.4 177 79.7
Eucgr.C03340 Eucalyptus grandis HOM05D002335 ORTHO05D006692 2.4e-83 312.4 177 78.5
Potri.006G142000 Populus trichocarpa HOM05D002335 ORTHO05D006692 2.4e-83 312.4 177 78.5
COL.COLO4_18100 Corchorus olitorius HOM05D002335 ORTHO05D006692 4.1e-83 311.6 193 74.1
BcaC06g35951 Brassica carinata HOM05D002335 ORTHO05D006692 5.3e-83 311.2 179 78.8
RcHm_v2.0_Chr2g0094901 Rosa chinensis HOM05D002335 ORTHO05D006692 5.3e-83 311.2 179 77.1
Eucgr.C03348 Eucalyptus grandis HOM05D002335 ORTHO05D006692 6.9e-83 310.8 179 77.1
THA.LOC104826590 Tarenaya hassleriana HOM05D002335 ORTHO05D006692 6.9e-83 310.8 175 79.4
vmacro17199 Vaccinium macrocarpon HOM05D002335 ORTHO05D006692 6.9e-83 310.8 217 68.2
CANSAT56G4475 Cannabis sativa HOM05D002335 ORTHO05D006692 9.0e-83 310.5 179 76.5
Gohir.A06G076400 Gossypium hirsutum HOM05D002335 ORTHO05D006692 1.2e-82 310.1 175 78.9
A07p06320 Brassica napus HOM05D002335 ORTHO05D006282 2.0e-82 309.3 183 77.0
BcaB06g26882 Brassica carinata HOM05D002335 ORTHO05D006692 2.6e-82 308.9 179 78.2
Thhalv10008863m.g Eutrema salsugineum HOM05D002335 ORTHO05D006692 2.6e-82 308.9 179 77.7
PSO135G0567 Papaver somniferum HOM05D002335 ORTHO05D006692 2.6e-82 308.9 180 77.8
VMungo1215G3327 Vigna mungo HOM05D002335 ORTHO05D006692 2.6e-82 308.9 180 77.8
Carub.0003s2714 Capsella rubella HOM05D002335 ORTHO05D006692 3.4e-82 308.5 179 78.2
ClCG03G015100 Citrullus lanatus HOM05D002335 ORTHO05D006692 3.4e-82 308.5 175 77.7
Gorai.010G088300 Gossypium raimondii HOM05D002335 ORTHO05D006692 3.4e-82 308.5 175 78.9
BraA07t28424Z Brassica rapa HOM05D002335 ORTHO05D006282 4.5e-82 308.1 175 79.4
AT2G06010 Arabidopsis thaliana HOM05D002335 ORTHO05D006692 5.9e-82 307.8 177 78.5
MELO3C015519.2 Cucumis melo HOM05D002335 ORTHO05D006692 7.7e-82 307.4 175 77.1
CsaV3_1G041010 Cucumis sativus L. HOM05D002335 ORTHO05D006692 7.7e-82 307.4 175 77.1
ECA240G4665 Erigeron canadensis HOM05D002335 ORTHO05D006692 7.7e-82 307.4 175 77.1
Hund26036 Selenicereus undatus HOM05D002335 ORTHO05D006692 7.7e-82 307.4 177 75.7
Lsat_1_v5_gn_7_35121 Lactuca sativa HOM05D002335 ORTHO05D006692 1.0e-81 307.0 178 77.0
C07p09370 Brassica napus HOM05D002335 ORTHO05D006282 1.3e-81 306.6 175 78.9
BolC7t41360H Brassica oleracea HOM05D002335 ORTHO05D006282 1.3e-81 306.6 175 78.9
Rhsim05G0007700 Rhododendron simsii HOM05D002335 ORTHO05D006692 1.3e-81 306.6 163 82.8
Aa31sc133G40 Aethionema arabicum HOM05D002335 ORTHO05D006692 1.7e-81 306.2 179 76.0
PGR044G0908 Punica granatum HOM05D002335 ORTHO05D006692 1.7e-81 306.2 187 71.1
AL3G43590 Arabidopsis lyrata HOM05D002335 ORTHO05D006692 2.9e-81 305.4 177 78.0
CARHR103670 Cardamine hirsuta HOM05D002335 ORTHO05D006692 5.0e-81 304.7 175 77.7
Sp3g24590 Schrenkiella parvula HOM05D002335 ORTHO05D006692 5.0e-81 304.7 179 76.5
Eucgr.H02780 Eucalyptus grandis HOM05D002335 ORTHO05D006692 1.4e-80 303.1 177 76.3
MD02G1091100 Malus domestica HOM05D002335 ORTHO05D006692 1.4e-80 303.1 175 77.1
Sed0016579 Sechium edule HOM05D002335 ORTHO05D006692 3.2e-80 302.0 175 76.0
Sed0014235 Sechium edule HOM05D002335 ORTHO05D006692 7.2e-80 300.8 175 75.4
PGR044G2482 Punica granatum HOM05D002335 ORTHO05D006692 1.2e-79 300.1 187 70.6
FvH4_1g08630 Fragaria vesca HOM05D002335 ORTHO05D006692 4.6e-79 298.1 179 73.2
DCAR_024750 Daucus carota HOM05D002335 ORTHO05D006692 7.9e-79 297.4 175 77.1
DCAR_031919 Daucus carota HOM05D002335 ORTHO05D006692 7.9e-79 297.4 175 77.1
MD15G1217300 Malus domestica HOM05D002335 ORTHO05D006692 7.9e-79 297.4 175 75.4
Psat4g017640 Pisum sativum HOM05D002335 ORTHO05D006692 1.0e-78 297.0 175 74.9
Lalb_Chr12g0200131 Lupinus albus HOM05D002335 ORTHO05D006692 1.8e-78 296.2 185 73.0
THA.LOC104815332 Tarenaya hassleriana HOM05D002335 ORTHO05D006692 1.8e-78 296.2 176 76.1
Nitab4.5_0000073g0180 Nicotiana tabacum HOM05D002335 ORTHO05D006692 2.3e-78 295.8 154 90.3
FAN23G0492 Fragaria x ananassa HOM05D002335 ORTHO05D006692 5.1e-78 294.7 179 72.6
FAN28G2258 Fragaria x ananassa HOM05D002335 ORTHO05D006692 5.1e-78 294.7 179 72.6
Cc06_g12140 Coffea canephora HOM05D002335 ORTHO05D006692 2.2e-76 289.3 157 82.8
Peaxi162Scf00928g00035 Petunia axillaris HOM05D002335 ORTHO05D006692 1.1e-75 287.0 186 75.3
FAN19G2961 Fragaria x ananassa HOM05D002335 ORTHO05D006692 6.9e-75 284.3 200 65.0
Eucgr.C03331 Eucalyptus grandis HOM05D002335 ORTHO05D006692 1.5e-74 283.1 161 78.9
vmacro06340 Vaccinium macrocarpon HOM05D002335 ORTHO05D006692 8.5e-73 277.3 188 68.6
Thecc.09G077400 Theobroma cacao HOM05D002335 ORTHO05D006692 3.2e-72 275.4 153 78.4
FAN26G1566 Fragaria x ananassa HOM05D002335 ORTHO05D006692 7.2e-72 274.2 221 58.8
FAN26G0120 Fragaria x ananassa HOM05D002335 ORTHO05D006692 9.4e-72 273.9 221 58.4
CDE05G1851 Ceratophyllum demersum HOM05D002335 ORTHO05D006692 1.2e-71 273.5 179 68.7
MBI13_g42820_MAGBIO Magnolia biondii HOM05D002335 ORTHO05D006692 6.1e-71 271.2 182 68.1
Dinv42391 Davidia involucrata HOM05D002335 ORTHO05D006692 1.8e-70 269.6 174 72.4
HanXRQChr03g0060151 Helianthus annuus HOM05D002335 ORTHO05D006692 1.8e-70 269.6 162 74.7
MBI19_g11823_MAGBIO Magnolia biondii HOM05D002335 ORTHO05D006692 2.3e-70 269.2 177 68.9
MBI19_g37791_MAGBIO Magnolia biondii HOM05D002335 ORTHO05D006692 2.3e-70 269.2 177 68.9
ATR0598G258 Amborella trichopoda HOM05D002335 ORTHO05D006692 4.4e-69 265.0 175 66.9
Zm00001eb081660 Zea mays HOM05D002335 ORTHO05D006692 7.4e-69 264.2 184 64.7
Atru.chr7.1701 Acer truncatum HOM05D002335 ORTHO05D006692 1.8e-67 259.6 146 76.7
Rhsim03G0227700 Rhododendron simsii HOM05D002335 ORTHO05D006692 2.4e-67 259.2 282 50.0
Sabra06G0111100 Salix brachista HOM05D002335 ORTHO05D006692 2.4e-67 259.2 149 75.8
arahy.Tifrunner.gnm1.ann1.0T42SY Arachis hypogaea HOM05D002335 ORTHO05D006692 9.1e-67 257.3 177 68.4
arahy.Tifrunner.gnm1.ann1.U5UTMI Arachis hypogaea HOM05D002335 ORTHO05D006692 1.0e-65 253.8 177 68.4
Ca_21321_v3 Cicer arietinum L. HOM05D002335 ORTHO05D006692 5.0e-65 251.5 147 74.1
CDE11G0744 Ceratophyllum demersum HOM05D002335 ORTHO05D006692 1.9e-64 249.6 202 58.9
unitig_8.g3530 Utricularia gibba HOM05D002335 ORTHO05D006692 5.5e-64 248.1 179 66.5
TPR.G12576 Trifolium pratense HOM05D002335 ORTHO05D006692 1.5e-61 240.0 145 71.7
Medtr4g125360 Medicago truncatula HOM05D002335 ORTHO05D006692 9.1e-59 230.7 137 73.0
Nitab4.5_0011754g0020 Nicotiana tabacum HOM05D002335 ORTHO05D006692 2.9e-57 225.7 189 66.1
Mapoly0146s0032 Marchantia polymorpha HOM05D002335 ORTHO05D006692 1.2e-55 220.3 179 52.5
Lj7A687T54 Lonicera japonica HOM05D002335 ORTHO05D006692 4.7e-55 218.4 188 60.1
unitig_899.g15177 Utricularia gibba HOM05D002335 ORTHO05D006692 1.4e-54 216.9 165 59.4
Eucgr.C03278 Eucalyptus grandis HOM05D002335 ORTHO05D006692 8.8e-54 214.2 117 80.3
Gohir.D06G075400 Gossypium hirsutum HOM05D002335 ORTHO05D006692 2.4e-51 206.1 175 57.7
HPP92_013380 Vanilla planifolia HOM05D002335 ORTHO05D006692 9.1e-51 204.1 140 62.1
Ah.09g231610 Amaranthus hybridus HOM05D002335 ORTHO05D006692 3.8e-49 198.7 196 52.6
SMO361G0221 Selaginella moellendorffii HOM05D002335 ORTHO05D006692 4.4e-45 185.3 171 45.6
SMO361G0519 Selaginella moellendorffii HOM05D002335 ORTHO05D006692 4.4e-45 185.3 171 45.6
AagrBONN_evm.TU.Sc2ySwM_368.225 Anthoceros agrestis HOM05D002335 ORTHO05D006692 1.3e-44 183.7 198 44.4
Nitab4.5_0002966g0010 Nicotiana tabacum HOM05D002335 ORTHO05D006692 1.7e-44 183.3 93 84.9
AagrBONN_evm.TU.Sc2ySwM_368.521 Anthoceros agrestis HOM05D002335 ORTHO05D006692 6.6e-41 171.4 201 40.3
SEGI_04946 Sequoiadendron giganteum HOM05D002335 ORTHO05D006692 3.3e-40 169.1 119 63.0
Eucgr.C03281 Eucalyptus grandis HOM05D002335 ORTHO05D006692 1.0e-38 164.1 87 81.6
Pp3c2_1630 Physcomitrium patens HOM05D002335 ORTHO05D006692 2.3e-38 162.9 177 42.4
Eucgr.L03294 Eucalyptus grandis HOM05D002335 ORTHO05D006692 1.2e-37 160.6 140 55.7
Pp3c14_25980 Physcomitrium patens HOM05D002335 ORTHO05D006692 2.2e-36 156.4 204 35.8
Eucgr.C03513 Eucalyptus grandis HOM05D002335 ORTHO05D006692 4.1e-35 152.1 146 54.1
HPP92_013408 Vanilla planifolia HOM05D006937 ORTHO05D008747 9.2e-35 151.0 160 46.2
CBR_g38469 Chara braunii HOM05D002335 ORTHO05D006692 7.8e-34 147.9 142 46.5
HPP92_013382 Vanilla planifolia HOM05D002335 ORTHO05D006692 1.6e-31 140.2 93 64.5
Os04g0446200 Oryza sativa ssp. japonica HOM05D002335 ORTHO05D006692 1.0e-25 120.9 97 57.7
vmacro17200 Vaccinium macrocarpon HOM05D001119 ORTHO05D000862 2.9e-12 76.3 49 69.4
Thecc.09G077100 Theobroma cacao HOM05D001119 ORTHO05D000862 8.4e-12 74.7 67 52.2
Nn6g32302 Nelumbo nucifera HOM05D002335 ORTHO05D006692 5.2e-06 55.5 46 60.9


User provided reference genes

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