Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen12g003900 Solanum pennellii HOM05D004042 ORTHO05D004552 9.9e-289 996.1 517 100.0
Solyc12g008970.3 Solanum lycopersicum HOM05D004042 ORTHO05D004552 6.9e-282 973.4 520 97.9
PGSC0003DMG400000274 Solanum tuberosum HOM05D004042 ORTHO05D004552 9.9e-273 943.0 523 93.9
Solyc07g040740.3 Solanum lycopersicum HOM05D004042 ORTHO05D004552 2.8e-206 722.2 475 75.8
Sopen07g019480 Solanum pennellii HOM05D004042 ORTHO05D004552 8.9e-205 717.2 475 75.4
CAN.G57.12 Capsicum annuum HOM05D004042 ORTHO05D004552 5.7e-204 714.5 498 73.5
CAN.G1583.6 Capsicum annuum HOM05D004042 ORTHO05D004552 2.9e-203 712.2 370 92.4
Peaxi162Scf00498g00448 Petunia axillaris HOM05D004042 ORTHO05D004552 4.9e-203 711.4 484 76.9
MSTRG.19492 Avicennia marina HOM05D004042 ORTHO05D004552 1.3e-200 703.4 495 70.3
Cc06_g11620 Coffea canephora HOM05D004042 ORTHO05D004552 3.3e-199 698.7 425 78.8
Ciclev10008048m.g Citrus clementina HOM05D004042 ORTHO05D004552 4.3e-199 698.4 489 69.7
Cfa003057 Carpinus fangiana HOM05D004042 ORTHO05D004552 1.6e-198 696.4 484 70.7
Haze_25938 Corylus avellana HOM05D004042 ORTHO05D004552 4.7e-198 694.9 496 69.6
Migut.J00573 Erythranthe guttata HOM05D004042 ORTHO05D004552 6.8e-197 691.0 509 67.0
Oeu051295.1 Olea europaea HOM05D004042 ORTHO05D004552 1.5e-196 689.9 499 70.1
Prupe.7G206100 Prunus persica HOM05D004042 ORTHO05D004552 2.0e-196 689.5 497 69.0
CiPaw.04G147900 Carya illinoinensis HOM05D004042 ORTHO05D004552 2.6e-196 689.1 460 72.2
Medtr4g125980 Medicago truncatula HOM05D004042 ORTHO05D004552 7.5e-196 687.6 431 74.7
Nitab4.5_0009216g0010 Nicotiana tabacum HOM05D004042 ORTHO05D004552 7.5e-196 687.6 554 67.0
TAR624G0704 Trochodendron aralioides HOM05D004042 ORTHO05D004552 9.8e-196 687.2 475 73.1
Aqoxy7G01162 Aquilegia oxysepala HOM05D004042 ORTHO05D004552 3.7e-195 685.3 442 75.8
Glyma.13G106100 Glycine max HOM05D004042 ORTHO05D004552 1.1e-194 683.7 482 70.1
Atru.chr7.1627 Acer truncatum HOM05D004042 ORTHO05D004552 1.4e-194 683.3 482 69.9
PSO063G3240 Papaver somniferum HOM05D004042 ORTHO05D004552 1.4e-194 683.3 420 77.4
GSVIVG01015174001 Vitis vinifera HOM05D004042 ORTHO05D004552 3.2e-194 682.2 420 76.7
Phvul.003G134900 Phaseolus vulgaris HOM05D004042 ORTHO05D004552 6.0e-193 677.9 481 69.2
Sc08g0008580 Simmondsia chinensis HOM05D004042 ORTHO05D004552 6.0e-193 677.9 422 77.3
Oeu054835.1 Olea europaea HOM05D004042 ORTHO05D004552 7.8e-193 677.6 507 69.0
MD02G1082600 Malus domestica HOM05D004042 ORTHO05D004552 1.3e-192 676.8 499 67.5
PSO832G2139 Papaver somniferum HOM05D004042 ORTHO05D004552 1.3e-192 676.8 419 76.6
ATR0789G051 Amborella trichopoda HOM05D004042 ORTHO05D004552 3.0e-192 675.6 465 69.2
VMungo1215G0315 Vigna mungo HOM05D004042 ORTHO05D004552 5.0e-192 674.9 481 69.0
CiPaw.03G212500 Carya illinoinensis HOM05D004042 ORTHO05D004552 6.6e-192 674.5 505 68.1
TPR.G29533 Trifolium pratense HOM05D004042 ORTHO05D004552 1.1e-191 673.7 482 68.5
Psat7g044040 Pisum sativum HOM05D004042 ORTHO05D004552 1.5e-191 673.3 431 74.5
QL02p062121 Quercus lobata HOM05D004042 ORTHO05D004552 1.9e-191 672.9 506 68.0
Glyma.17G053300 Glycine max HOM05D004042 ORTHO05D004552 2.5e-191 672.5 482 68.3
PGR142G2341 Punica granatum HOM05D004042 ORTHO05D004552 2.5e-191 672.5 498 67.5
Medtr2g039940 Medicago truncatula HOM05D004042 ORTHO05D004552 7.3e-191 671.0 484 68.6
TPR.G9438 Trifolium pratense HOM05D004042 ORTHO05D004552 7.3e-191 671.0 486 67.9
CsaV3_2G001380 Cucumis sativus L. HOM05D004042 ORTHO05D004552 9.5e-191 670.6 435 74.0
MELO3C004632.2 Cucumis melo HOM05D004042 ORTHO05D004552 1.2e-190 670.2 435 73.8
MD15G1210700 Malus domestica HOM05D004042 ORTHO05D004552 1.2e-190 670.2 493 66.9
HanXRQChr10g0319461 Helianthus annuus HOM05D004042 ORTHO05D004552 1.6e-190 669.8 486 67.5
Thecc.09G085400 Theobroma cacao HOM05D004042 ORTHO05D004552 2.1e-190 669.5 499 67.9
HanXRQChr12g0354671 Helianthus annuus HOM05D004042 ORTHO05D004552 3.6e-190 668.7 439 73.1
Dinv42339 Davidia involucrata HOM05D004042 ORTHO05D004552 4.7e-190 668.3 395 79.2
Potri.018G066100 Populus trichocarpa HOM05D004042 ORTHO05D004552 8.1e-190 667.5 494 67.2
Lj4g0002498 Lotus japonicus HOM05D004042 ORTHO05D004552 1.4e-189 666.8 485 68.5
Psat1g132200 Pisum sativum HOM05D004042 ORTHO05D004552 1.8e-189 666.4 482 68.9
Nn6g35535 Nelumbo nucifera HOM05D004042 ORTHO05D004552 2.3e-189 666.0 486 68.5
Sed0015499 Sechium edule HOM05D004042 ORTHO05D004552 2.3e-189 666.0 444 71.6
DCAR_028272 Daucus carota HOM05D004042 ORTHO05D004552 5.2e-189 664.8 444 72.1
Lalb_Chr13g0299591 Lupinus albus HOM05D004042 ORTHO05D004552 8.9e-189 664.1 499 65.5
Glyma.09G065300 Glycine max HOM05D004042 ORTHO05D004552 2.0e-188 662.9 513 64.9
PSO210G1704 Papaver somniferum HOM05D004042 ORTHO05D004552 2.2e-187 659.4 457 71.6
PSO210G6497 Papaver somniferum HOM05D004042 ORTHO05D004552 2.9e-187 659.1 457 70.9
Phvul.009G230700 Phaseolus vulgaris HOM05D004042 ORTHO05D004552 2.9e-187 659.1 479 67.6
Lalb_Chr08g0232371 Lupinus albus HOM05D004042 ORTHO05D004552 4.9e-187 658.3 425 73.9
Gorai.001G013100 Gossypium raimondii HOM05D004042 ORTHO05D004552 6.4e-187 657.9 495 66.3
CDE05G1317 Ceratophyllum demersum HOM05D004042 ORTHO05D004552 8.3e-187 657.5 486 66.0
ECA234G2403 Erigeron canadensis HOM05D004042 ORTHO05D004552 8.3e-187 657.5 419 74.2
Gohir.D07G012400 Gossypium hirsutum HOM05D004042 ORTHO05D004552 1.4e-186 656.8 495 66.1
THA.LOC104814629 Tarenaya hassleriana HOM05D004042 ORTHO05D004552 1.4e-186 656.8 506 67.2
CANSAT56G0725 Cannabis sativa HOM05D004042 ORTHO05D004552 3.2e-186 655.6 530 63.6
Nitab4.5_0002824g0090 Nicotiana tabacum HOM05D004042 ORTHO05D004552 3.2e-186 655.6 418 80.4
HanXRQChr03g0060291 Helianthus annuus HOM05D004042 ORTHO05D004552 7.1e-186 654.4 474 68.1
ClCG11G001680 Citrullus lanatus HOM05D004042 ORTHO05D004552 1.2e-185 653.7 439 71.5
Gohir.A07G012600 Gossypium hirsutum HOM05D004042 ORTHO05D004552 1.6e-185 653.3 495 65.9
Lj6g0011849 Lotus japonicus HOM05D004042 ORTHO05D004552 3.5e-185 652.1 510 64.1
Actinidia25240 Actinidia chinensis HOM05D004042 ORTHO05D004552 3.0e-184 649.0 469 70.1
HPP92_005224 Vanilla planifolia HOM05D004042 ORTHO05D004552 3.0e-184 649.0 487 67.6
RcHm_v2.0_Chr2g0093781 Rosa chinensis HOM05D004042 ORTHO05D004552 3.9e-184 648.7 486 66.9
AT2G19450 Arabidopsis thaliana HOM05D004042 ORTHO05D004552 8.6e-184 647.5 421 75.3
C07p02710 Brassica napus HOM05D004042 ORTHO05D004552 8.6e-184 647.5 477 68.8
BolC7t40671H Brassica oleracea HOM05D004042 ORTHO05D004552 8.6e-184 647.5 477 68.8
AL3G48800 Arabidopsis lyrata HOM05D004042 ORTHO05D004552 1.5e-183 646.7 482 68.9
FvH4_1g07910 Fragaria vesca HOM05D004042 ORTHO05D004552 1.2e-182 643.7 497 65.0
Os06g0563900 Oryza sativa ssp. japonica HOM05D004042 ORTHO05D004552 2.1e-182 642.9 417 73.1
TWI32G1194 Tripterygium wilfordii HOM05D004042 ORTHO05D004552 2.1e-182 642.9 489 66.9
A07p01320 Brassica napus HOM05D004042 ORTHO05D004552 4.7e-182 641.7 480 68.3
BraA07t27923Z Brassica rapa HOM05D004042 ORTHO05D004552 4.7e-182 641.7 480 68.3
CARHR109890 Cardamine hirsuta HOM05D004042 ORTHO05D004552 6.2e-182 641.3 501 66.9
BcaB07g31608 Brassica carinata HOM05D004042 ORTHO05D004552 8.1e-182 641.0 494 66.6
BcaC04g22852 Brassica carinata HOM05D004042 ORTHO05D004552 8.1e-182 641.0 499 65.9
BcaC06g36576 Brassica carinata HOM05D004042 ORTHO05D004552 8.1e-182 641.0 438 71.5
BolC9t54364H Brassica oleracea HOM05D004042 ORTHO05D004552 8.1e-182 641.0 499 65.9
Sp3g32820 Schrenkiella parvula HOM05D004042 ORTHO05D004552 8.1e-182 641.0 488 67.4
Carub.0003s3373 Capsella rubella HOM05D004042 ORTHO05D004552 1.4e-181 640.2 495 67.3
C09p14580 Brassica napus HOM05D004042 ORTHO05D004552 1.8e-181 639.8 494 67.0
BraA09t36880Z Brassica rapa HOM05D004042 ORTHO05D004552 1.8e-181 639.8 494 67.0
Manes.16G100000 Manihot esculenta HOM05D004042 ORTHO05D004552 2.4e-181 639.4 482 66.2
A09p12360 Brassica napus HOM05D004042 ORTHO05D004552 3.1e-181 639.0 494 66.8
Duzib168G0739 Durio zibethinus HOM05D004042 ORTHO05D004552 3.1e-181 639.0 467 67.7
Thhalv10022645m.g Eutrema salsugineum HOM05D004042 ORTHO05D004552 3.1e-181 639.0 484 68.2
BcaB03g16730 Brassica carinata HOM05D004042 ORTHO05D004552 4.0e-181 638.6 478 67.8
vmacro17139 Vaccinium macrocarpon HOM05D004042 ORTHO05D004552 5.2e-181 638.3 609 56.7
Zm00001eb277490 Zea mays HOM05D004042 ORTHO05D004552 8.6e-176 620.9 423 71.6
FAN26G3195 Fragaria x ananassa HOM05D004042 ORTHO05D004552 1.9e-175 619.8 481 65.9
FAN26G0253 Fragaria x ananassa HOM05D004042 ORTHO05D004552 5.6e-175 618.2 481 65.7
FAN28G1686 Fragaria x ananassa HOM05D004042 ORTHO05D004552 5.6e-175 618.2 481 65.3
TWI63G1034 Tripterygium wilfordii HOM05D004042 ORTHO05D004552 2.1e-174 616.3 470 67.4
FAN23G0463 Fragaria x ananassa HOM05D004042 ORTHO05D004552 2.6e-172 609.4 477 65.0
Nitab4.5_0001519g0080 Nicotiana tabacum HOM05D004042 ORTHO05D004552 3.4e-172 609.0 513 65.5
FAN19G1831 Fragaria x ananassa HOM05D004042 ORTHO05D004552 5.8e-172 608.2 508 62.0
Lj7C679G4 Lonicera japonica HOM05D004042 ORTHO05D004552 1.7e-171 606.7 460 69.1
Aa31LG8G16450 Aethionema arabicum HOM05D004042 ORTHO05D004552 6.4e-171 604.7 419 72.6
Os05g0196800 Oryza sativa ssp. japonica HOM05D004042 ORTHO05D004552 8.4e-171 604.4 419 69.0
Nitab4.5_0002642g0100 Nicotiana tabacum HOM05D004042 ORTHO05D004552 9.3e-170 600.9 443 72.5
Potri.006G147600 Populus trichocarpa HOM05D004042 ORTHO05D004552 9.3e-170 600.9 428 68.2
SGA_v2.0_scaffold91G28060 Striga asiatica HOM05D004042 ORTHO05D004552 1.5e-167 593.6 504 62.9
arahy.Tifrunner.gnm1.ann1.MYU01D Arachis hypogaea HOM05D004042 ORTHO05D004552 4.3e-167 592.0 560 56.6
unitig_8.g4318 Utricularia gibba HOM05D004042 ORTHO05D004552 7.3e-167 591.3 488 62.9
Lsat_1_v5_gn_5_143061 Lactuca sativa HOM05D004042 ORTHO05D004552 9.6e-167 590.9 485 63.7
Dinv36786 Davidia involucrata HOM05D004042 ORTHO05D004552 5.4e-162 575.1 426 69.0
Mapoly0012s0121 Marchantia polymorpha HOM05D004042 ORTHO05D004552 5.4e-162 575.1 494 57.3
TAR636G2477 Trochodendron aralioides HOM05D004042 ORTHO05D004552 3.3e-159 565.8 410 69.8
Rhsim05G0016600 Rhododendron simsii HOM05D004042 ORTHO05D004552 5.6e-159 565.1 559 57.6
AagrBONN_evm.TU.Sc2ySwM_117.1233 Anthoceros agrestis HOM05D004042 ORTHO05D004552 7.4e-159 564.7 420 64.0
Pp3c15_23830 Physcomitrium patens HOM05D004042 ORTHO05D004552 1.3e-158 563.9 506 57.5
arahy.Tifrunner.gnm1.ann1.MZM9C8 Arachis hypogaea HOM05D004042 ORTHO05D004552 2.1e-158 563.1 572 54.2
HPP92_003981 Vanilla planifolia HOM05D004042 ORTHO05D004552 5.3e-157 558.5 453 63.1
Oeu032802.1 Olea europaea HOM05D004042 ORTHO05D004552 9.0e-157 557.8 506 61.5
AagrBONN_evm.TU.Sc2ySwM_344.3248 Anthoceros agrestis HOM05D004042 ORTHO05D004552 1.2e-156 557.4 480 57.5
SMO356G0470 Selaginella moellendorffii HOM05D004042 ORTHO05D004552 1.7e-155 553.5 416 65.6
arahy.Tifrunner.gnm1.ann1.W5L64F Arachis hypogaea HOM05D004042 ORTHO05D004552 1.9e-154 550.1 496 59.5
Eucgr.C03419 Eucalyptus grandis HOM05D004042 ORTHO05D004552 3.5e-153 545.8 352 75.9
DCAR_011961 Daucus carota HOM05D004042 ORTHO05D004552 1.3e-150 537.3 368 69.0
SalBow6G0873 Salvia bowleyana HOM05D004042 ORTHO05D004552 1.6e-150 537.0 517 58.2
Peaxi162Scf00494g00077 Petunia axillaris HOM05D004042 ORTHO05D004552 2.4e-149 533.1 456 64.3
EL10Ac8g19178 Beta vulgaris HOM05D004042 ORTHO05D004552 9.0e-149 531.2 478 58.2
arahy.Tifrunner.gnm1.ann1.5W0QMQ Arachis hypogaea HOM05D004042 ORTHO05D004552 5.8e-148 528.5 482 59.1
Ca_13125_v3 Cicer arietinum L. HOM05D004042 ORTHO05D004552 5.3e-141 505.4 416 63.7
Zm00001eb284200 Zea mays HOM05D004042 ORTHO05D004552 1.1e-138 497.7 354 69.8
Pp3c9_24440 Physcomitrium patens HOM05D004042 ORTHO05D004552 7.2e-138 495.0 401 61.8
Lalb_Chr11g0074521 Lupinus albus HOM05D004042 ORTHO05D004552 2.3e-136 490.0 373 66.8
CSS0045629 Camellia sinensis var. sinensis HOM05D004042 ORTHO05D004552 5.7e-135 485.3 518 53.5
Hund25994 Selenicereus undatus HOM05D004042 ORTHO05D004552 1.7e-134 483.8 373 65.4
Hund06663 Selenicereus undatus HOM05D004042 ORTHO05D004552 2.6e-132 476.5 449 58.1
Sabra18G0058600 Salix brachista HOM05D004042 ORTHO05D004552 2.2e-131 473.4 378 66.4
Sabra06G0116600 Salix brachista HOM05D004042 ORTHO05D004552 2.9e-131 473.0 348 67.2
Manes.03G036000 Manihot esculenta HOM05D004042 ORTHO05D004552 1.1e-130 471.1 441 58.5
Ca_21290_v3 Cicer arietinum L. HOM05D004042 ORTHO05D004552 5.5e-130 468.8 376 65.4
AUR62029034 Chenopodium quinoa HOM05D004042 ORTHO05D004552 5.1e-128 462.2 364 65.9
AagrBONN_evm.TU.Sc2ySwM_344.1721 Anthoceros agrestis HOM05D004042 ORTHO05D004552 4.4e-119 432.6 354 60.2
Sc18g0002260 Simmondsia chinensis HOM05D004042 ORTHO05D004552 1.2e-111 407.9 278 73.4
VMungo1309G0638 Vigna mungo HOM05D004042 ORTHO05D004552 1.2e-111 407.9 301 69.1
CDE05G1467 Ceratophyllum demersum HOM05D004042 ORTHO05D004552 2.0e-111 407.1 358 59.5
PRCOL_00002371 Prasinoderma coloniale HOM05D004042 ORTHO05D004552 1.9e-98 364.0 434 46.1
Hma1.2p1_0672F.1_g201026 Hydrangea macrophylla HOM05D004042 ORTHO05D004552 4.1e-93 346.3 210 77.1
PGSC0003DMG400032788 Solanum tuberosum HOM05D004042 ORTHO05D004552 1.6e-81 307.8 270 64.8
Cpa.g.sc737.2 Carica papaya HOM05D004042 ORTHO05D004552 8.1e-73 278.9 151 78.8
AUR62033935 Chenopodium quinoa HOM05D004042 ORTHO05D004552 8.9e-72 275.4 258 57.8
SMO361G0462 Selaginella moellendorffii HOM05D004042 ORTHO05D004552 1.1e-64 251.9 192 59.9
COL.COLO4_18176 Corchorus olitorius HOM05D004042 ORTHO05D004552 1.5e-63 248.1 207 63.3
Lj4C291G3 Lonicera japonica HOM05D004042 ORTHO05D004552 2.7e-60 237.3 319 49.5
Cre01.g045903 Chlamydomonas reinhardtii HOM05D004042 ORTHO05D004552 1.0e-59 235.3 160 61.9
Haze_27058 Corylus avellana HOM05D004042 ORTHO05D004552 5.1e-59 233.0 404 33.7
FAN28G2747 Fragaria x ananassa HOM05D004042 ORTHO05D004552 4.3e-58 229.9 433 36.7
Hma1.2p1_0672F.1_g201023 Hydrangea macrophylla HOM05D004042 ORTHO05D004552 2.1e-57 227.6 155 72.3
Cfa021676 Carpinus fangiana HOM05D004042 ORTHO05D004552 2.1e-52 211.1 464 31.7
PGSC0003DMG400032789 Solanum tuberosum HOM05D004042 ORTHO05D004552 8.1e-49 199.1 104 83.7
Cpa.g.sc737.3 Carica papaya HOM05D004042 ORTHO05D004552 2.7e-44 184.1 203 53.2
Cfa024924 Carpinus fangiana HOM05D004042 ORTHO05D004552 1.4e-21 108.6 230 31.7
Cfa025900 Carpinus fangiana HOM05D004042 ORTHO05D123407 7.2e-21 106.3 197 33.0
Peaxi162Scf00126g01028 Petunia axillaris HOM05D004042 ORTHO05D004552 1.8e-16 91.7 49 85.7
Glyma.15G171700 Glycine max HOM05D004042 ORTHO05D004552 1.5e-15 88.6 54 68.5
PSO765G0232 Papaver somniferum HOM05D004042 ORTHO05D004552 2.6e-15 87.8 125 46.4
Lalb_Chr11g0074531 Lupinus albus HOM05D004042 ORTHO05D004552 7.7e-15 86.3 49 71.4
Sabra18G0058500 Salix brachista HOM05D004042 ORTHO05D004552 1.5e-10 72.0 106 39.6
AUR62029035 Chenopodium quinoa HOM05D004042 ORTHO05D004552 2.8e-09 67.8 39 74.4
SEGI_28032 Sequoiadendron giganteum HOM05D004042 ORTHO05D004552 1.4e-08 65.5 63 46.0
PSO339G6631 Papaver somniferum HOM05D002947 ORTHO05D037275 4.5e-07 60.5 39 71.8
PSO266G0038 Papaver somniferum HOM05D002947 ORTHO05D037275 1.7e-06 58.5 37 73.0
Peaxi162Scf00126g01016 Petunia axillaris HOM05D004042 ORTHO05D306396 6.5e-06 56.6 25 88.0


User provided reference genes

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