Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen12g003880 Solanum pennellii HOM05D003238 ORTHO05D003571 2.5e-91 339.0 194 100.0
PGSC0003DMG400000275 Solanum tuberosum HOM05D003238 ORTHO05D003571 1.5e-80 303.1 194 90.7
Solyc12g008950.2 Solanum lycopersicum HOM05D003238 ORTHO05D003571 2.4e-78 295.8 194 88.7
Peaxi162Scf00498g00436 Petunia axillaris HOM05D003238 ORTHO05D003571 2.0e-56 223.0 177 77.4
Nitab4.5_0002824g0070 Nicotiana tabacum HOM05D003238 ORTHO05D003571 2.3e-49 199.5 194 68.6
MSTRG.6003 Avicennia marina HOM05D003238 ORTHO05D003571 4.6e-37 158.7 188 56.4
Cfa003064 Carpinus fangiana HOM05D003238 ORTHO05D003571 3.9e-36 155.6 193 58.5
TWI63G0468 Tripterygium wilfordii HOM05D003238 ORTHO05D003571 1.4e-33 147.1 189 54.5
SGA_v2.0_scaffold10G05235 Striga asiatica HOM05D002348 ORTHO05D002512 3.1e-33 146.0 186 57.5
Lj4C292G2 Lonicera japonica HOM05D003238 ORTHO05D003571 2.9e-31 139.4 210 50.0
TWI32G0644 Tripterygium wilfordii HOM05D003238 ORTHO05D003571 9.2e-30 134.4 193 52.8
FAN26G1453 Fragaria x ananassa HOM05D003238 ORTHO05D003571 1.2e-29 134.0 193 53.9
FAN26G0800 Fragaria x ananassa HOM05D003238 ORTHO05D003571 2.7e-29 132.9 193 53.9
FAN23G0786 Fragaria x ananassa HOM05D003238 ORTHO05D003571 7.8e-29 131.3 193 54.9
RcHm_v2.0_Chr2g0093691 Rosa chinensis HOM05D003238 ORTHO05D003571 3.9e-28 129.0 188 51.1
FAN28G2679 Fragaria x ananassa HOM05D003238 ORTHO05D003571 1.9e-27 126.7 193 52.8
Actinidia25242 Actinidia chinensis HOM05D003238 ORTHO05D003571 3.3e-27 125.9 189 42.9
MD15G1209800 Malus domestica HOM05D003238 ORTHO05D003571 3.3e-27 125.9 202 49.0
Medtr2g039890 Medicago truncatula HOM05D003238 ORTHO05D003571 1.6e-26 123.6 185 51.9
Oeu017609.1 Olea europaea HOM05D003238 ORTHO05D003571 1.6e-26 123.6 184 48.9
FvH4_1g07820 Fragaria vesca HOM05D003238 ORTHO05D003571 2.1e-26 123.2 193 51.8
FAN19G2918 Fragaria x ananassa HOM05D003238 ORTHO05D003571 2.1e-26 123.2 193 51.8
MD02G1082200 Malus domestica HOM05D003238 ORTHO05D003571 2.8e-26 122.9 203 48.3
GSVIVG01015179001 Vitis vinifera HOM05D003238 ORTHO05D003571 6.2e-26 121.7 175 53.1
CiPaw.03G213000 Carya illinoinensis HOM05D003238 ORTHO05D003571 8.1e-26 121.3 177 52.5
Haze_25933 Corylus avellana HOM05D003238 ORTHO05D003571 1.1e-25 120.9 191 51.8
Ca_26161_v3 Cicer arietinum L. HOM05D003238 ORTHO05D003571 1.4e-25 120.6 173 44.5
Oeu004201.1 Olea europaea HOM05D003238 ORTHO05D003571 1.4e-25 120.6 242 41.3
QL02p062228 Quercus lobata HOM05D003238 ORTHO05D003571 2.3e-25 119.8 191 50.8
Rhsim05G0017200 Rhododendron simsii HOM05D003238 ORTHO05D003571 6.8e-25 118.2 199 49.2
Prupe.7G206700 Prunus persica HOM05D003238 ORTHO05D003571 2.0e-24 116.7 204 49.5
Hma1.2p1_0169F.1_g074900 Hydrangea macrophylla HOM05D003238 ORTHO05D003571 2.6e-24 116.3 193 49.7
Ciclev10009462m.g Citrus clementina HOM05D003238 ORTHO05D003571 4.4e-24 115.5 180 50.6
Dinv36782 Davidia involucrata HOM05D003238 ORTHO05D003571 1.4e-22 110.5 191 49.2
Migut.J00580 Erythranthe guttata HOM05D003238 ORTHO05D003571 2.4e-22 109.8 159 43.4
Psat1g140480 Pisum sativum HOM05D003238 ORTHO05D003571 7.1e-22 108.2 183 42.6
vmacro17137 Vaccinium macrocarpon HOM05D003238 ORTHO05D003571 1.2e-21 107.5 181 46.4
TPR.G13426 Trifolium pratense HOM05D003238 ORTHO05D003571 2.1e-21 106.7 175 44.6
Glyma.15G170900 Glycine max HOM05D003238 ORTHO05D003571 2.7e-21 106.3 173 45.7
PGR142G0437 Punica granatum HOM05D003238 ORTHO05D003571 3.5e-21 105.9 212 34.0
arahy.Tifrunner.gnm1.ann1.57GLQM Arachis hypogaea HOM05D003238 ORTHO05D003571 7.8e-21 104.8 174 40.8
Lj6g0026431 Lotus japonicus HOM05D003238 ORTHO05D003571 8.6e-20 101.3 195 45.6
Nn6g35523 Nelumbo nucifera HOM05D003238 ORTHO05D003571 3.3e-19 99.4 178 47.2
Nitab4.5_0009992g0010 Nicotiana tabacum HOM05D003238 ORTHO05D003571 3.3e-19 99.4 61 82.0
DCAR_031341 Daucus carota HOM05D003238 ORTHO05D003571 7.3e-19 98.2 193 35.2
CANSAT56G2721 Cannabis sativa HOM05D003238 ORTHO05D003571 1.6e-18 97.1 196 44.9
Lsat_1_v5_gn_8_86760 Lactuca sativa HOM05D003238 ORTHO05D003571 1.1e-17 94.4 212 34.4
Lalb_Chr08g0232341 Lupinus albus HOM05D003238 ORTHO05D003571 1.4e-17 94.0 181 34.8
arahy.Tifrunner.gnm1.ann1.ZSY109 Arachis hypogaea HOM05D003238 ORTHO05D003571 5.2e-17 92.0 174 37.9
CSS0012761 Camellia sinensis var. sinensis HOM05D003238 ORTHO05D003571 1.5e-16 90.5 195 37.9
ECA236G3496 Erigeron canadensis HOM05D003238 ORTHO05D003571 2.0e-16 90.1 183 37.2
CSS0032672 Camellia sinensis var. sinensis HOM05D003238 ORTHO05D003571 4.4e-16 89.0 153 40.5
DCAR_031339 Daucus carota HOM05D003238 ORTHO05D003571 4.4e-16 89.0 136 39.7
THA.LOC104813494 Tarenaya hassleriana HOM05D003238 ORTHO05D003571 5.8e-16 88.6 153 37.3
HanXRQChr04g0126171 Helianthus annuus HOM05D003238 ORTHO05D003571 3.8e-15 85.9 162 35.2
Phvul.009G231100 Phaseolus vulgaris HOM05D003238 ORTHO05D003571 6.4e-15 85.1 155 36.8
BraA10t43522Z Brassica rapa HOM05D003238 ORTHO05D003571 1.4e-14 84.0 74 55.4
HanXRQChr06g0178591 Helianthus annuus HOM05D003238 ORTHO05D003571 4.2e-14 82.4 186 32.8
TAR624G1148 Trochodendron aralioides HOM05D003238 ORTHO05D003571 4.2e-14 82.4 86 67.4
Eucgr.C00871 Eucalyptus grandis HOM05D003238 ORTHO05D003571 1.6e-13 80.5 194 32.0
SalBow6G6091 Salvia bowleyana HOM05D003238 ORTHO05D003571 1.6e-13 80.5 65 60.0
Aqoxy7G04029 Aquilegia oxysepala HOM05D003238 ORTHO05D003571 4.6e-13 79.0 94 66.0
Thecc.09G086100 Theobroma cacao HOM05D003238 ORTHO05D003571 4.6e-13 79.0 94 66.0
CiPaw.02G138700 Carya illinoinensis HOM05D003238 ORTHO05D003571 6.0e-13 78.6 60 65.0
BcaB08g36028 Brassica carinata HOM05D003238 ORTHO05D003571 1.0e-12 77.8 54 64.8
Os09g0363700 Oryza sativa ssp. japonica HOM05D003238 ORTHO05D003571 1.3e-12 77.4 146 39.0
Actinidia39710 Actinidia chinensis HOM05D003238 ORTHO05D003571 1.7e-12 77.0 87 65.5
TAR362G1092 Trochodendron aralioides HOM05D003238 ORTHO05D003571 5.1e-12 75.5 52 69.2
TAR624G0020 Trochodendron aralioides HOM05D003238 ORTHO05D003571 5.1e-12 75.5 52 69.2
Sed0015805 Sechium edule HOM05D003238 ORTHO05D003571 8.7e-12 74.7 97 63.9
C09p48650 Brassica napus HOM05D003238 ORTHO05D003571 1.1e-11 74.3 77 50.6
Potri.004G095300 Populus trichocarpa HOM05D003238 ORTHO05D003571 1.1e-11 74.3 78 53.8
BcaC04g20028 Brassica carinata HOM05D003238 ORTHO05D003571 1.9e-11 73.6 79 49.4
BolC9t57711H Brassica oleracea HOM05D003238 ORTHO05D003571 1.9e-11 73.6 79 49.4
ClCG05G000830 Citrullus lanatus HOM05D003238 ORTHO05D003571 1.9e-11 73.6 149 35.6
Migut.D00960 Erythranthe guttata HOM05D003238 ORTHO05D003571 1.9e-11 73.6 88 50.0
PGR102G1556 Punica granatum HOM05D003238 ORTHO05D003571 1.9e-11 73.6 85 64.7
unitig_26.g9174 Utricularia gibba HOM05D003238 ORTHO05D003571 1.9e-11 73.6 110 39.1
Zm00001eb310990 Zea mays HOM05D003238 ORTHO05D003571 2.5e-11 73.2 145 35.2
Actinidia39103 Actinidia chinensis HOM05D003238 ORTHO05D003571 4.3e-11 72.4 85 69.4
Prupe.3G046400 Prunus persica HOM05D003238 ORTHO05D003571 4.3e-11 72.4 75 54.7
Dinv37898 Davidia involucrata HOM05D003238 ORTHO05D003571 5.6e-11 72.0 90 65.6
Thhalv10014757m.g Eutrema salsugineum HOM05D003238 ORTHO05D003571 5.6e-11 72.0 186 30.6
Carub.0002s1954 Capsella rubella HOM05D003238 ORTHO05D003571 7.3e-11 71.6 87 43.7
Phvul.010G137200 Phaseolus vulgaris HOM05D003238 ORTHO05D003571 7.3e-11 71.6 88 63.6
Duzib160G0096 Durio zibethinus HOM05D003238 ORTHO05D003571 9.6e-11 71.2 88 65.9
QL05p009982 Quercus lobata HOM05D003238 ORTHO05D003571 9.6e-11 71.2 96 59.4
CiPaw.01G223100 Carya illinoinensis HOM05D003238 ORTHO05D003571 1.3e-10 70.9 84 65.5
HPP92_006473 Vanilla planifolia HOM05D003238 ORTHO05D003571 1.3e-10 70.9 46 67.4
Cfa003563 Carpinus fangiana HOM05D003238 ORTHO05D003571 1.6e-10 70.5 83 63.9
Gorai.001G012800 Gossypium raimondii HOM05D003238 ORTHO05D003571 2.1e-10 70.1 98 59.2
HanXRQChr02g0031751 Helianthus annuus HOM05D003238 ORTHO05D003571 2.8e-10 69.7 75 53.3
A03p13050 Brassica napus HOM05D003238 ORTHO05D003571 3.6e-10 69.3 52 63.5
BraA03t10615Z Brassica rapa HOM05D003238 ORTHO05D003571 3.6e-10 69.3 52 63.5
Lj3g0007714 Lotus japonicus HOM05D003238 ORTHO05D003571 3.6e-10 69.3 94 62.8
TAR375G0996 Trochodendron aralioides HOM05D003238 ORTHO05D003571 4.8e-10 68.9 52 63.5
Glyma.08G191200 Glycine max HOM05D003238 ORTHO05D003571 6.2e-10 68.6 96 60.4
TWI79G0340 Tripterygium wilfordii HOM05D003238 ORTHO05D003571 6.2e-10 68.6 87 63.2
Thhalv10019375m.g Eutrema salsugineum HOM05D003238 ORTHO05D003571 8.1e-10 68.2 79 48.1
MD09G1190500 Malus domestica HOM05D003238 ORTHO05D003571 1.1e-09 67.8 75 53.3
CDE05G2517 Ceratophyllum demersum HOM05D003238 ORTHO05D003571 1.4e-09 67.4 152 42.1
ClCG09G000780 Citrullus lanatus HOM05D003238 ORTHO05D003571 1.4e-09 67.4 97 59.8
Haze_15983 Corylus avellana HOM05D003238 ORTHO05D003571 1.4e-09 67.4 85 62.4
CsaV3_3G008070 Cucumis sativus L. HOM05D003238 ORTHO05D003571 1.4e-09 67.4 144 34.0
CsaV3_7G034700 Cucumis sativus L. HOM05D003238 ORTHO05D003571 1.8e-09 67.0 97 59.8
Sed0010916 Sechium edule HOM05D003238 ORTHO05D003571 1.8e-09 67.0 81 46.9
Lsat_1_v5_gn_1_35700 Lactuca sativa HOM05D003238 ORTHO05D003571 2.4e-09 66.6 52 65.4
CARHR018090 Cardamine hirsuta HOM05D003238 ORTHO05D003571 3.1e-09 66.2 74 50.0
MELO3C006025.2 Cucumis melo HOM05D003238 ORTHO05D003571 4.0e-09 65.9 144 32.6
MELO3C024380.2 Cucumis melo HOM05D003238 ORTHO05D003571 4.0e-09 65.9 97 58.8
Atru.chr1.3787 Acer truncatum HOM05D003238 ORTHO05D003571 5.3e-09 65.5 85 62.4
Duzib168G0217 Durio zibethinus HOM05D003238 ORTHO05D003571 5.3e-09 65.5 162 45.1
Nitab4.5_0005918g0030 Nicotiana tabacum HOM05D003238 ORTHO05D003571 5.3e-09 65.5 88 64.8
Rhsim08G0235200 Rhododendron simsii HOM05D003238 ORTHO05D003571 5.3e-09 65.5 86 67.4
Thecc.06G114200 Theobroma cacao HOM05D003238 ORTHO05D003571 5.3e-09 65.5 88 63.6
COL.COLO4_30681 Corchorus olitorius HOM05D003238 ORTHO05D003571 6.9e-09 65.1 88 63.6
RcHm_v2.0_Chr3g0459511 Rosa chinensis HOM05D003238 ORTHO05D003571 6.9e-09 65.1 47 59.6
THA.LOC109116473 Tarenaya hassleriana HOM05D003238 ORTHO05D003571 6.9e-09 65.1 85 65.9
MSTRG.4775 Avicennia marina HOM05D003238 ORTHO05D003571 9.0e-09 64.7 51 62.7
Ciclev10026836m.g Citrus clementina HOM05D003238 ORTHO05D003571 9.0e-09 64.7 91 58.2
Glyma.07G008200 Glycine max HOM05D003238 ORTHO05D003571 9.0e-09 64.7 96 58.3
RcHm_v2.0_Chr2g0144001 Rosa chinensis HOM05D003238 ORTHO05D003571 9.0e-09 64.7 47 61.7
CARHR270740 Cardamine hirsuta HOM05D003238 ORTHO05D003571 1.2e-08 64.3 177 37.3
C02p14700 Brassica napus HOM05D003238 ORTHO05D003571 1.5e-08 63.9 176 30.1
BolC2t07595H Brassica oleracea HOM05D003238 ORTHO05D003571 1.5e-08 63.9 176 30.1
Gohir.A10G058000 Gossypium hirsutum HOM05D003238 ORTHO05D003571 1.5e-08 63.9 93 62.4
Nitab4.5_0000255g0290 Nicotiana tabacum HOM05D003238 ORTHO05D003571 1.5e-08 63.9 73 69.9
Sp1g15630 Schrenkiella parvula HOM05D003238 ORTHO05D003571 1.5e-08 63.9 72 47.2
Carub.0001s1726 Capsella rubella HOM05D003238 ORTHO05D003571 2.0e-08 63.5 99 39.4
DCAR_026391 Daucus carota HOM05D003238 ORTHO05D003571 2.0e-08 63.5 78 65.4
Gohir.D10G059800 Gossypium hirsutum HOM05D003238 ORTHO05D003571 2.0e-08 63.5 93 62.4
BcaB05g22307 Brassica carinata HOM05D003238 ORTHO05D003571 2.6e-08 63.2 174 30.5
CARHR065610 Cardamine hirsuta HOM05D003238 ORTHO05D003571 2.6e-08 63.2 59 59.3
COL.COLO4_18181 Corchorus olitorius HOM05D003238 ORTHO05D003571 2.6e-08 63.2 59 59.3
FAN14G3690 Fragaria x ananassa HOM05D003238 ORTHO05D003571 2.6e-08 63.2 74 48.6
Gorai.011G063800 Gossypium raimondii HOM05D003238 ORTHO05D003571 2.6e-08 63.2 93 62.4
MBI04_g36912_MAGBIO Magnolia biondii HOM05D003238 ORTHO05D003571 2.6e-08 63.2 82 61.0
Sp6g18700 Schrenkiella parvula HOM05D003238 ORTHO05D003571 2.6e-08 63.2 196 29.1
Gohir.D07G012200 Gossypium hirsutum HOM05D001717 ORTHO05D007217 3.4e-08 62.8 92 57.6
arahy.Tifrunner.gnm1.ann1.7T9QNI Arachis hypogaea HOM05D003238 ORTHO05D003571 4.5e-08 62.4 86 58.1
Solyc06g062765.1 Solanum lycopersicum HOM05D003238 ORTHO05D003571 4.5e-08 62.4 85 65.9
Cpa.g.sc25.72 Carica papaya HOM05D003238 ORTHO05D003571 5.8e-08 62.0 49 63.3
FvH4_6g33970 Fragaria vesca HOM05D003238 ORTHO05D003571 5.8e-08 62.0 74 48.6
FAN09G2388 Fragaria x ananassa HOM05D003238 ORTHO05D003571 5.8e-08 62.0 74 48.6
SalBow7G1866 Salvia bowleyana HOM05D003238 ORTHO05D003571 5.8e-08 62.0 79 45.6
Sopen06g022220 Solanum pennellii HOM05D003238 ORTHO05D003571 5.8e-08 62.0 85 65.9
HPP92_007657 Vanilla planifolia HOM05D003238 ORTHO05D003571 5.8e-08 62.0 78 62.8
BcaC03g14186 Brassica carinata HOM05D003238 ORTHO05D003571 7.6e-08 61.6 176 29.5
FAN05G5076 Fragaria x ananassa HOM05D003238 ORTHO05D003571 7.6e-08 61.6 74 48.6
Manes.11G024400 Manihot esculenta HOM05D003238 ORTHO05D003571 7.6e-08 61.6 94 54.3
Sp5g27750 Schrenkiella parvula HOM05D003238 ORTHO05D003571 7.6e-08 61.6 58 58.6
A09p28910 Brassica napus HOM05D003238 ORTHO05D003571 9.9e-08 61.2 59 59.3
BraA09t38454Z Brassica rapa HOM05D003238 ORTHO05D003571 9.9e-08 61.2 59 59.3
Aa31LG7G2200 Aethionema arabicum HOM05D003238 ORTHO05D003571 1.3e-07 60.8 73 43.8
Manes.16G100500 Manihot esculenta HOM05D003238 ORTHO05D003571 1.3e-07 60.8 93 57.0
Sc14g0000680 Simmondsia chinensis HOM05D051806 ORTHO05D003571 1.3e-07 60.8 53 52.8
C06p34720 Brassica napus HOM05D003238 ORTHO05D003571 2.2e-07 60.1 61 57.4
Psat4g187480 Pisum sativum HOM05D003238 ORTHO05D003571 2.2e-07 60.1 99 57.6
AL2G32370 Arabidopsis lyrata HOM05D003238 ORTHO05D003571 2.9e-07 59.7 50 62.0
ATR0789G083 Amborella trichopoda HOM05D003238 ORTHO05D003571 3.8e-07 59.3 103 55.3
arahy.Tifrunner.gnm1.ann1.HS5001 Arachis hypogaea HOM05D003238 ORTHO05D003571 3.8e-07 59.3 84 58.3
Potri.017G119600 Populus trichocarpa HOM05D003238 ORTHO05D003571 3.8e-07 59.3 84 60.7
AL1G29780 Arabidopsis lyrata HOM05D003238 ORTHO05D003571 6.4e-07 58.5 74 51.4
AT1G72690 Arabidopsis thaliana HOM05D003238 ORTHO05D003571 6.4e-07 58.5 50 62.0
BcaNung05566 Brassica carinata HOM05D003238 ORTHO05D003571 6.4e-07 58.5 58 46.6
C05p15920 Brassica napus HOM05D003238 ORTHO05D003571 6.4e-07 58.5 58 46.6
BolC5t30295H Brassica oleracea HOM05D003238 ORTHO05D003571 6.4e-07 58.5 58 46.6
GSVIVG01016802001 Vitis vinifera HOM05D003238 ORTHO05D003571 6.4e-07 58.5 96 53.1
CANSAT56G1439 Cannabis sativa HOM05D003238 ORTHO05D003571 8.4e-07 58.2 81 64.2
Medtr8g017610 Medicago truncatula HOM05D003238 ORTHO05D003571 8.4e-07 58.2 92 60.9
TPR.G27679 Trifolium pratense HOM05D003238 ORTHO05D003571 8.4e-07 58.2 93 59.1
A10p14320 Brassica napus HOM05D003238 ORTHO05D003571 1.1e-06 57.8 135 38.5
HPP92_006471 Vanilla planifolia HOM05D003238 ORTHO05D003571 1.1e-06 57.8 37 67.6
BcaNung05568 Brassica carinata HOM05D003238 ORTHO05D003571 1.4e-06 57.4 58 46.6
A06p13430 Brassica napus HOM05D003238 ORTHO05D003571 1.4e-06 57.4 58 46.6
BraA06t24495Z Brassica rapa HOM05D003238 ORTHO05D003571 1.4e-06 57.4 58 46.6
Potri.006G148000 Populus trichocarpa HOM05D003238 ORTHO05D003571 1.9e-06 57.0 101 49.5
Hund20825 Selenicereus undatus HOM05D003238 ORTHO05D003571 1.9e-06 57.0 79 57.0
Sc15g0000270 Simmondsia chinensis HOM05D003238 ORTHO05D003571 1.9e-06 57.0 77 57.1
vmacro23045 Vaccinium macrocarpon HOM05D003238 ORTHO05D003571 1.9e-06 57.0 82 63.4
A02p08810 Brassica napus HOM05D003238 ORTHO05D003571 3.2e-06 56.2 175 28.6
BraA02t05948Z Brassica rapa HOM05D003238 ORTHO05D003571 3.2e-06 56.2 175 28.6
PSO210G1081 Papaver somniferum HOM05D003238 ORTHO05D003571 3.2e-06 56.2 87 62.1
AT1G17490 Arabidopsis thaliana HOM05D003238 ORTHO05D003571 5.4e-06 55.5 73 43.8
Ca_23334_v3 Cicer arietinum L. HOM05D003238 ORTHO05D003571 5.4e-06 55.5 95 57.9
Cc00_g10140 Coffea canephora HOM05D001135 ORTHO05D001005 5.4e-06 55.5 48 54.2
Atru.chr7.1621 Acer truncatum HOM05D003238 ORTHO05D003571 9.3e-06 54.7 57 50.9
PSO210G2488 Papaver somniferum HOM05D003238 ORTHO05D003571 9.3e-06 54.7 88 60.2


User provided reference genes

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