Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen12g003730 Solanum pennellii HOM05D000095 ORTHO05D000393 2.4e-57 225.3 115 100.0
Solyc12g008800.3 Solanum lycopersicum HOM05D000095 ORTHO05D000393 1.3e-50 203.0 117 93.2
PGSC0003DMG400000340 Solanum tuberosum HOM05D000095 ORTHO05D000393 7.9e-45 183.7 117 85.5
CAN.G1241.19 Capsicum annuum HOM05D000095 ORTHO05D000393 3.0e-36 155.2 128 71.9
Nitab4.5_0000540g0280 Nicotiana tabacum HOM05D000095 ORTHO05D000393 2.2e-23 112.5 112 61.6
Nitab4.5_0011903g0010 Nicotiana tabacum HOM05D000095 ORTHO05D000393 1.1e-22 110.2 113 60.2
Peaxi162Scf00498g00013 Petunia axillaris HOM05D000095 ORTHO05D000393 4.6e-21 104.8 134 56.0
Duzib168G0176 Durio zibethinus HOM05D000095 ORTHO05D000393 4.8e-18 94.7 119 55.5
Migut.J00595 Erythranthe guttata HOM05D000095 ORTHO05D000393 2.4e-17 92.4 116 53.4
Gohir.A06G071500 Gossypium hirsutum HOM05D000095 ORTHO05D000393 2.4e-17 92.4 114 55.3
Thecc.09G091800 Theobroma cacao HOM05D000095 ORTHO05D000393 3.1e-17 92.0 118 54.2
Cc06_g11200 Coffea canephora HOM05D000095 ORTHO05D000393 4.1e-17 91.7 122 56.6
Duzib187G1917 Durio zibethinus HOM05D000095 ORTHO05D000393 4.1e-17 91.7 114 53.5
Eucgr.C03658 Eucalyptus grandis HOM05D000095 ORTHO05D000393 4.1e-17 91.7 117 56.4
Dinv42304 Davidia involucrata HOM05D000095 ORTHO05D000393 5.3e-17 91.3 115 53.9
QL02p062965 Quercus lobata HOM05D000095 ORTHO05D000393 6.9e-17 90.9 120 54.2
Psat1g048200 Pisum sativum HOM05D000095 ORTHO05D000393 9.0e-17 90.5 117 53.8
GSVIVG01035363001 Vitis vinifera HOM05D000095 ORTHO05D000393 9.0e-17 90.5 116 51.7
MSTRG.19526 Avicennia marina HOM05D000095 ORTHO05D000393 1.5e-16 89.7 118 55.9
Potri.006G150300 Populus trichocarpa HOM05D000095 ORTHO05D000393 2.6e-16 89.0 114 50.9
Sabra06G0119000 Salix brachista HOM05D000095 ORTHO05D000393 3.4e-16 88.6 114 50.9
TPR.G35497 Trifolium pratense HOM05D000095 ORTHO05D000393 4.5e-16 88.2 117 51.3
Haze_25893 Corylus avellana HOM05D000095 ORTHO05D000393 7.7e-16 87.4 118 50.0
vmacro17222 Vaccinium macrocarpon HOM05D000095 ORTHO05D000393 7.7e-16 87.4 121 52.1
Medtr6g092540 Medicago truncatula HOM05D000095 ORTHO05D000393 1.0e-15 87.0 117 51.3
PSO210G3938 Papaver somniferum HOM05D000095 ORTHO05D000393 1.0e-15 87.0 132 44.7
Actinidia39724 Actinidia chinensis HOM05D000095 ORTHO05D000393 1.7e-15 86.3 119 49.6
PSO210G6553 Papaver somniferum HOM05D000095 ORTHO05D000393 1.7e-15 86.3 132 43.9
Hma1.2p1_0798F.1_g219700 Hydrangea macrophylla HOM05D000095 ORTHO05D000393 2.2e-15 85.9 117 54.7
Actinidia01193 Actinidia chinensis HOM05D000095 ORTHO05D000393 2.9e-15 85.5 115 55.7
CiPaw.03G217700 Carya illinoinensis HOM05D000095 ORTHO05D000393 3.8e-15 85.1 114 52.6
DCAR_011987 Daucus carota HOM05D000095 ORTHO05D000393 5.0e-15 84.7 118 52.5
Gorai.009G030900 Gossypium raimondii HOM05D000095 ORTHO05D000393 5.0e-15 84.7 118 50.8
Lj2g0026427 Lotus japonicus HOM05D000095 ORTHO05D000393 5.0e-15 84.7 120 53.3
COL.COLO4_18219 Corchorus olitorius HOM05D000095 ORTHO05D000393 6.5e-15 84.3 123 52.0
Dinv36752 Davidia involucrata HOM05D000095 ORTHO05D000393 6.5e-15 84.3 121 51.2
Gohir.D05G030700 Gossypium hirsutum HOM05D000095 ORTHO05D000393 8.5e-15 84.0 118 50.8
Gohir.D06G070200 Gossypium hirsutum HOM05D000095 ORTHO05D000393 8.5e-15 84.0 119 51.3
Gorai.010G081800 Gossypium raimondii HOM05D000095 ORTHO05D000393 8.5e-15 84.0 119 50.4
CSS0049647 Camellia sinensis var. sinensis HOM05D000095 ORTHO05D000393 1.4e-14 83.2 114 51.8
GSVIVG01015223001 Vitis vinifera HOM05D000095 ORTHO05D000393 1.4e-14 83.2 120 51.7
Nitab4.5_0001584g0120 Nicotiana tabacum HOM05D000095 ORTHO05D000393 2.5e-14 82.4 124 45.2
Glyma.08G029400 Glycine max HOM05D000095 ORTHO05D000393 5.5e-14 81.3 114 52.6
Nn6g35436 Nelumbo nucifera HOM05D000095 ORTHO05D000393 7.2e-14 80.9 116 46.6
TWI63G1838 Tripterygium wilfordii HOM05D000095 ORTHO05D000393 9.4e-14 80.5 114 49.1
VMungo0251G3783 Vigna mungo HOM05D000095 ORTHO05D000393 9.4e-14 80.5 114 51.8
Atru.chr7.1567 Acer truncatum HOM05D000095 ORTHO05D000393 1.2e-13 80.1 118 41.5
Gohir.A05G029200 Gossypium hirsutum HOM05D000095 ORTHO05D000393 1.2e-13 80.1 118 48.3
Rhsim05G0022500 Rhododendron simsii HOM05D000095 ORTHO05D000393 1.2e-13 80.1 119 51.3
TAR624G0957 Trochodendron aralioides HOM05D000095 ORTHO05D000393 1.2e-13 80.1 119 47.9
Phvul.002G304400 Phaseolus vulgaris HOM05D000095 ORTHO05D000393 1.6e-13 79.7 114 52.6
Aqoxy7G01249 Aquilegia oxysepala HOM05D000095 ORTHO05D000393 2.1e-13 79.3 119 49.6
Lalb_Chr14g0375341 Lupinus albus HOM05D000095 ORTHO05D000393 2.1e-13 79.3 114 48.2
Solyc07g026680.2 Solanum lycopersicum HOM05D000095 ORTHO05D000393 2.1e-13 79.3 124 51.6
CiPaw.04G151500 Carya illinoinensis HOM05D000095 ORTHO05D000393 3.6e-13 78.6 122 49.2
Manes.03G032300 Manihot esculenta HOM05D000095 ORTHO05D000393 3.6e-13 78.6 117 46.2
CSS0018279 Camellia sinensis var. sinensis HOM05D000095 ORTHO05D000393 4.6e-13 78.2 114 49.1
FvH4_1g07170 Fragaria vesca HOM05D000095 ORTHO05D000393 6.1e-13 77.8 132 47.0
Glyma.05G222600 Glycine max HOM05D000095 ORTHO05D000393 6.1e-13 77.8 114 51.8
FAN28G1723 Fragaria x ananassa HOM05D000095 ORTHO05D000393 7.9e-13 77.4 132 47.0
Nn8g38903 Nelumbo nucifera HOM05D000095 ORTHO05D000393 7.9e-13 77.4 114 45.6
FAN26G0332 Fragaria x ananassa HOM05D000095 ORTHO05D000393 2.3e-12 75.9 132 46.2
HanXRQChr10g0319241 Helianthus annuus HOM05D000095 ORTHO05D000393 2.3e-12 75.9 124 48.4
VMungo0464G1470 Vigna mungo HOM05D000095 ORTHO05D000393 2.3e-12 75.9 115 47.0
FAN19G0808 Fragaria x ananassa HOM05D000095 ORTHO05D000393 3.0e-12 75.5 132 46.2
FAN26G2131 Fragaria x ananassa HOM05D000095 ORTHO05D000393 3.0e-12 75.5 132 46.2
Oeu034065.1 Olea europaea HOM05D000095 ORTHO05D000393 3.0e-12 75.5 121 46.3
Eucgr.C03026 Eucalyptus grandis HOM05D000095 ORTHO05D000393 3.9e-12 75.1 134 42.5
Eucgr.D00726 Eucalyptus grandis HOM05D000095 ORTHO05D000393 3.9e-12 75.1 134 42.5
Lj4g0019928 Lotus japonicus HOM05D000095 ORTHO05D000393 3.9e-12 75.1 118 48.3
Manes.16G079600 Manihot esculenta HOM05D000095 ORTHO05D000393 3.9e-12 75.1 119 49.6
Sed0013843 Sechium edule HOM05D000095 ORTHO05D000393 3.9e-12 75.1 116 47.4
Lalb_Chr16g0390931 Lupinus albus HOM05D000095 ORTHO05D000393 5.1e-12 74.7 116 49.1
Manes.16G103300 Manihot esculenta HOM05D000095 ORTHO05D000393 5.1e-12 74.7 114 46.5
Sed0018412 Sechium edule HOM05D000095 ORTHO05D000393 6.7e-12 74.3 117 47.9
Zm00001eb161460 Zea mays HOM05D000095 ORTHO05D000393 6.7e-12 74.3 123 43.9
FAN23G1718 Fragaria x ananassa HOM05D000095 ORTHO05D000393 1.1e-11 73.6 132 44.7
Nitab4.5_0000713g0070 Nicotiana tabacum HOM05D000095 ORTHO05D000393 1.1e-11 73.6 117 50.4
Prupe.7G212300 Prunus persica HOM05D000095 ORTHO05D000393 1.1e-11 73.6 125 44.0
Thecc.09G052900 Theobroma cacao HOM05D000095 ORTHO05D000393 1.5e-11 73.2 115 47.0
Actinidia30308 Actinidia chinensis HOM05D000095 ORTHO05D000393 2.0e-11 72.8 115 50.4
Hma1.2p1_0800F.1_g220010 Hydrangea macrophylla HOM05D000095 ORTHO05D000393 2.0e-11 72.8 120 47.5
MD02G1076300 Malus domestica HOM05D000095 ORTHO05D000393 2.0e-11 72.8 133 42.1
Peaxi162Scf00136g00115 Petunia axillaris HOM05D000095 ORTHO05D000393 2.0e-11 72.8 125 43.2
QL02p001345 Quercus lobata HOM05D000095 ORTHO05D000393 2.0e-11 72.8 120 47.5
Rhsim11G0044700 Rhododendron simsii HOM05D000095 ORTHO05D000393 2.0e-11 72.8 123 46.3
TAR626G0503 Trochodendron aralioides HOM05D000095 ORTHO05D000393 2.0e-11 72.8 116 43.1
RcHm_v2.0_Chr2g0093071 Rosa chinensis HOM05D000095 ORTHO05D000393 2.5e-11 72.4 122 42.6
Nitab4.5_0004456g0060 Nicotiana tabacum HOM05D000095 ORTHO05D000393 3.3e-11 72.0 123 45.5
Actinidia25262 Actinidia chinensis HOM05D000095 ORTHO05D000393 4.3e-11 71.6 118 47.5
MSTRG.10571 Avicennia marina HOM05D000095 ORTHO05D000393 4.3e-11 71.6 119 47.1
MD15G1204700 Malus domestica HOM05D000095 ORTHO05D000393 4.3e-11 71.6 135 43.0
Os05g0195700 Oryza sativa ssp. japonica HOM05D000095 ORTHO05D000393 4.3e-11 71.6 134 44.8
Phvul.004G171200 Phaseolus vulgaris HOM05D000095 ORTHO05D000393 4.3e-11 71.6 115 47.0
MSTRG.6049 Avicennia marina HOM05D000095 ORTHO05D000393 5.7e-11 71.2 114 44.7
Lalb_Chr22g0349721 Lupinus albus HOM05D000095 ORTHO05D000393 5.7e-11 71.2 115 47.0
Potri.006G230500 Populus trichocarpa HOM05D000095 ORTHO05D000393 7.4e-11 70.9 115 46.1
TAR383G0327 Trochodendron aralioides HOM05D000095 ORTHO05D000393 7.4e-11 70.9 119 43.7
TWI34G1719 Tripterygium wilfordii HOM05D000095 ORTHO05D000393 9.7e-11 70.5 114 50.0
Cc08_g10500 Coffea canephora HOM05D000095 ORTHO05D000393 1.3e-10 70.1 115 44.3
Cfa003107 Carpinus fangiana HOM05D000095 ORTHO05D000393 1.7e-10 69.7 66 56.1
ECA234G2422 Erigeron canadensis HOM05D000095 ORTHO05D000393 1.7e-10 69.7 142 42.3
Lsat_1_v5_gn_5_145621 Lactuca sativa HOM05D000095 ORTHO05D000393 2.2e-10 69.3 124 44.4
PGR142G2400 Punica granatum HOM05D000095 ORTHO05D000393 2.8e-10 68.9 139 40.3
Hma1.2p1_0482F.1_g162580 Hydrangea macrophylla HOM05D000095 ORTHO05D000393 3.7e-10 68.6 116 46.6
Atru.chr7.1051 Acer truncatum HOM05D000095 ORTHO05D000393 4.8e-10 68.2 114 41.2
CANSAT31G0001 Cannabis sativa HOM05D000095 ORTHO05D000393 6.3e-10 67.8 145 38.6
CANSAT56G2805 Cannabis sativa HOM05D000095 ORTHO05D000393 6.3e-10 67.8 145 38.6
TPR.G25467 Trifolium pratense HOM05D000095 ORTHO05D000393 6.3e-10 67.8 119 44.5
Oeu024588.1 Olea europaea HOM05D000095 ORTHO05D000393 8.2e-10 67.4 118 46.6
Sopen08g018930 Solanum pennellii HOM05D000095 ORTHO05D000393 8.2e-10 67.4 114 43.0
vmacro00149 Vaccinium macrocarpon HOM05D000095 ORTHO05D000393 1.1e-09 67.0 123 42.3
CsaV3_1G040280 Cucumis sativus L. HOM05D000095 ORTHO05D000393 1.8e-09 66.2 134 39.6
Lj7P673T48 Lonicera japonica HOM05D000095 ORTHO05D000393 3.1e-09 65.5 131 42.7
MBI01_g02254_MAGBIO Magnolia biondii HOM05D000095 ORTHO05D000393 3.1e-09 65.5 114 41.2
vmacro00147 Vaccinium macrocarpon HOM05D000095 ORTHO05D000393 3.1e-09 65.5 119 47.1
Zm00001eb357780 Zea mays HOM05D000095 ORTHO05D000393 3.1e-09 65.5 140 38.6
Ciclev10009011m.g Citrus clementina HOM05D000095 ORTHO05D000393 5.3e-09 64.7 123 42.3
Lj8A543G14 Lonicera japonica HOM05D000095 ORTHO05D000393 6.9e-09 64.3 129 38.8
Os01g0603300 Oryza sativa ssp. japonica HOM05D000095 ORTHO05D000393 6.9e-09 64.3 133 42.1
Lj8A548G14 Lonicera japonica HOM05D000095 ORTHO05D000393 9.1e-09 63.9 129 37.2
Eucgr.C00908 Eucalyptus grandis HOM05D000095 ORTHO05D000393 1.2e-08 63.5 121 43.0
Medtr8g101650 Medicago truncatula HOM05D000095 ORTHO05D000393 1.5e-08 63.2 114 43.0
Sed0016361 Sechium edule HOM05D000095 ORTHO05D000393 1.5e-08 63.2 114 42.1
MELO3C015456.2 Cucumis melo HOM05D000095 ORTHO05D000393 2.0e-08 62.8 139 41.0
BcaB08g36052 Brassica carinata HOM05D000095 ORTHO05D000393 2.6e-08 62.4 120 39.2
A10p14130 Brassica napus HOM05D000095 ORTHO05D000393 2.6e-08 62.4 120 38.3
BraA10t43505Z Brassica rapa HOM05D000095 ORTHO05D000393 2.6e-08 62.4 120 38.3
Thhalv10014394m.g Eutrema salsugineum HOM05D000095 ORTHO05D000393 2.6e-08 62.4 121 41.3
HPP92_005554 Vanilla planifolia HOM05D000095 ORTHO05D000393 3.4e-08 62.0 127 44.1
ATR0705G032 Amborella trichopoda HOM05D000095 ORTHO05D000393 4.5e-08 61.6 115 46.1
arahy.Tifrunner.gnm1.ann1.BAG535 Arachis hypogaea HOM05D000095 ORTHO05D000393 4.5e-08 61.6 74 52.7
Ciclev10009128m.g Citrus clementina HOM05D000095 ORTHO05D000393 4.5e-08 61.6 114 43.9
AT5G56840 Arabidopsis thaliana HOM05D000095 ORTHO05D000393 5.9e-08 61.2 118 38.1
Sp6g18550 Schrenkiella parvula HOM05D000095 ORTHO05D000393 5.9e-08 61.2 122 37.7
TWI18G0144 Tripterygium wilfordii HOM05D000095 ORTHO05D000393 5.9e-08 61.2 126 39.7
AL8G32690 Arabidopsis lyrata HOM05D000095 ORTHO05D000393 7.7e-08 60.8 118 38.1
arahy.Tifrunner.gnm1.ann1.D1YJVB Arachis hypogaea HOM05D000095 ORTHO05D000393 1.0e-07 60.5 77 50.6
Hund19463 Selenicereus undatus HOM05D000095 ORTHO05D000393 1.0e-07 60.5 118 40.7
Solyc08g065380.3 Solanum lycopersicum HOM05D000095 ORTHO05D000393 1.3e-07 60.1 116 41.4
SGA_v2.0_scaffold28G11945 Striga asiatica HOM05D000095 ORTHO05D000393 1.3e-07 60.1 83 47.0
BcaC01g06449 Brassica carinata HOM05D000095 ORTHO05D000393 1.7e-07 59.7 122 36.9
TWI12G0339 Tripterygium wilfordii HOM05D000095 ORTHO05D000393 1.7e-07 59.7 126 39.7
CSS0001023 Camellia sinensis var. sinensis HOM05D000095 ORTHO05D000393 2.2e-07 59.3 114 43.0
CSS0003042 Camellia sinensis var. sinensis HOM05D000095 ORTHO05D000393 2.2e-07 59.3 114 43.0
Glyma.04G051000 Glycine max HOM05D000095 ORTHO05D000393 2.2e-07 59.3 119 41.2
Duzib160G0536 Durio zibethinus HOM05D000095 ORTHO05D000393 2.9e-07 58.9 125 40.0
Nitab4.5_0004087g0040 Nicotiana tabacum HOM05D000095 ORTHO05D000393 3.8e-07 58.5 122 39.3
BcaB01g04421 Brassica carinata HOM05D000095 ORTHO05D000393 5.0e-07 58.2 122 38.5
Lj1g0002759 Lotus japonicus HOM05D000095 ORTHO05D000393 5.0e-07 58.2 121 38.0
Carub.0008s1730 Capsella rubella HOM05D000095 ORTHO05D000393 6.5e-07 57.8 118 39.0
C03p15370 Brassica napus HOM05D000095 ORTHO05D000393 1.1e-06 57.0 120 36.7
C09p48440 Brassica napus HOM05D000095 ORTHO05D000393 1.1e-06 57.0 118 37.3
BraA03t10625Z Brassica rapa HOM05D000095 ORTHO05D000393 1.4e-06 56.6 120 36.7
CARHR270590 Cardamine hirsuta HOM05D000095 ORTHO05D000393 1.4e-06 56.6 120 36.7
Gohir.A05G129100 Gossypium hirsutum HOM05D000095 ORTHO05D000393 1.4e-06 56.6 122 39.3
Aa31LG3G12740 Aethionema arabicum HOM05D000095 ORTHO05D000393 2.5e-06 55.8 118 39.8
Gorai.009G137300 Gossypium raimondii HOM05D000095 ORTHO05D000393 2.5e-06 55.8 122 39.3
Glyma.14G093800 Glycine max HOM05D000095 ORTHO05D000393 3.2e-06 55.5 133 37.6
A03p13140 Brassica napus HOM05D000095 ORTHO05D000393 4.2e-06 55.1 109 36.7
Psat7g019800 Pisum sativum HOM05D000095 ORTHO05D000393 4.2e-06 55.1 112 42.0
Sed0010972 Sechium edule HOM05D000095 ORTHO05D000393 4.2e-06 55.1 120 35.8
BolC3t13978H Brassica oleracea HOM05D000095 ORTHO05D000393 5.5e-06 54.7 120 36.7
Gohir.D05G133700 Gossypium hirsutum HOM05D000095 ORTHO05D000393 5.5e-06 54.7 122 38.5
Manes.14G039400 Manihot esculenta HOM05D000095 ORTHO05D000393 5.5e-06 54.7 115 37.4
Sabra01G0151500 Salix brachista HOM05D000095 ORTHO05D000393 5.5e-06 54.7 122 39.3
Sed0007074 Sechium edule HOM05D000095 ORTHO05D000393 7.2e-06 54.3 116 39.7
Glyma.06G051900 Glycine max HOM05D000095 ORTHO05D000393 9.4e-06 53.9 124 37.1
Sed0022911 Sechium edule HOM05D000095 ORTHO05D000393 9.4e-06 53.9 120 35.0
VMungo1309G0207 Vigna mungo HOM05D000095 ORTHO05D000393 9.4e-06 53.9 115 40.9


User provided reference genes

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