Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen12g003720 Solanum pennellii HOM05D006034 ORTHO05D007535 4.2e-171 604.7 335 100.0
PGSC0003DMG400000341 Solanum tuberosum HOM05D006034 ORTHO05D007535 1.3e-161 573.2 333 94.0
CAN.G1241.18 Capsicum annuum HOM05D006034 ORTHO05D007535 9.6e-152 540.4 333 91.0
Solyc12g008790.3 Solanum lycopersicum HOM05D006034 ORTHO05D007535 1.1e-123 447.2 266 97.0
Cc06_g11190 Coffea canephora HOM05D006034 ORTHO05D007535 1.2e-122 443.7 348 71.6
Gorai.010G081700 Gossypium raimondii HOM05D006034 ORTHO05D007535 1.5e-120 436.8 334 70.4
COL.COLO4_18220 Corchorus olitorius HOM05D006034 ORTHO05D001756 2.0e-120 436.4 299 77.6
Gohir.D06G070100 Gossypium hirsutum HOM05D006034 ORTHO05D007535 5.7e-120 434.9 334 69.5
Migut.J00593 Erythranthe guttata HOM05D006034 ORTHO05D007535 1.1e-118 430.6 342 64.0
Gohir.A06G071400 Gossypium hirsutum HOM05D006034 ORTHO05D007535 1.2e-117 427.2 334 67.1
HanXRQChr12g0354751 Helianthus annuus HOM05D006034 ORTHO05D007535 2.0e-117 426.4 329 64.1
SGA_v2.0_scaffold62G21594 Striga asiatica HOM05D006034 ORTHO05D007535 1.7e-116 423.3 331 70.4
Lsat_1_v5_gn_5_145641 Lactuca sativa HOM05D006034 ORTHO05D007535 2.2e-116 422.9 331 70.7
Ciclev10008848m.g Citrus clementina HOM05D006034 ORTHO05D007535 3.8e-116 422.2 337 65.6
Lj7C673T11 Lonicera japonica HOM05D006034 ORTHO05D007535 1.6e-114 416.8 260 78.1
TAR636G0081 Trochodendron aralioides HOM05D006034 ORTHO05D007535 2.1e-114 416.4 341 67.7
ECA234G0840 Erigeron canadensis HOM05D006034 ORTHO05D001756 2.7e-114 416.0 258 75.2
CiPaw.03G217800 Carya illinoinensis HOM05D006034 ORTHO05D007535 1.2e-112 410.6 331 65.6
RcHm_v2.0_Chr2g0093061 Rosa chinensis HOM05D006034 ORTHO05D007535 3.1e-110 402.5 327 68.8
Potri.006G150200 Populus trichocarpa HOM05D006034 ORTHO05D007535 4.1e-110 402.1 302 65.2
FvH4_1g22100 Fragaria vesca HOM05D006034 ORTHO05D007535 1.2e-109 400.6 322 65.5
FAN19G2130 Fragaria x ananassa HOM05D006034 ORTHO05D007535 1.2e-109 400.6 322 65.5
PSO210G1139 Papaver somniferum HOM05D006034 ORTHO05D007535 1.2e-109 400.6 332 66.3
PSO210G3620 Papaver somniferum HOM05D006034 ORTHO05D007535 2.0e-109 399.8 337 64.4
Manes.03G032201 Manihot esculenta HOM05D006034 ORTHO05D007535 3.5e-109 399.1 341 68.3
Oeu021834.2 Olea europaea HOM05D006034 ORTHO05D007535 7.7e-109 397.9 331 70.7
GSVIVG01015225001 Vitis vinifera HOM05D006034 ORTHO05D007535 1.7e-108 396.7 337 67.7
Prupe.7G212400 Prunus persica HOM05D006034 ORTHO05D007535 3.8e-108 395.6 318 69.8
FAN26G1667 Fragaria x ananassa HOM05D006034 ORTHO05D007535 1.1e-107 394.0 255 72.9
QL02p062983 Quercus lobata HOM05D006034 ORTHO05D007535 1.1e-107 394.0 257 74.3
MELO3C015455.2 Cucumis melo HOM05D006034 ORTHO05D007535 1.8e-105 386.7 300 68.3
Aqoxy7G04066 Aquilegia oxysepala HOM05D006034 ORTHO05D007535 5.2e-105 385.2 257 70.0
MD02G1076200 Malus domestica HOM05D006034 ORTHO05D007535 5.2e-105 385.2 256 69.1
MD15G1204600 Malus domestica HOM05D006034 ORTHO05D007535 6.8e-105 384.8 248 71.8
Lj2g0022455 Lotus japonicus HOM05D006034 ORTHO05D007535 3.7e-103 379.0 330 60.6
Eucgr.C00910 Eucalyptus grandis HOM05D006034 ORTHO05D007535 8.3e-103 377.9 259 68.7
THA.LOC104807985 Tarenaya hassleriana HOM05D006034 ORTHO05D007535 2.4e-102 376.3 341 61.9
Actinidia25263 Actinidia chinensis HOM05D006034 ORTHO05D007535 7.7e-101 371.3 313 71.2
ATR0705G153 Amborella trichopoda HOM05D006034 ORTHO05D007535 3.6e-98 362.5 293 63.5
FAN23G1099 Fragaria x ananassa HOM05D006034 ORTHO05D007535 3.6e-98 362.5 255 69.0
Sabra06G0118900 Salix brachista HOM05D006034 ORTHO05D007535 3.6e-98 362.5 307 59.9
HPP92_023401 Vanilla planifolia HOM05D006034 ORTHO05D007535 4.7e-98 362.1 257 63.8
Os01g0722100 Oryza sativa ssp. japonica HOM05D006034 ORTHO05D007535 8.0e-98 361.3 301 65.8
TWI32G0461 Tripterygium wilfordii HOM05D006034 ORTHO05D007535 1.5e-96 357.1 303 68.0
AUR62031326 Chenopodium quinoa HOM05D006034 ORTHO05D007535 2.0e-96 356.7 235 69.4
Mapoly0014s0071 Marchantia polymorpha HOM05D006034 ORTHO05D007535 3.4e-96 355.9 258 61.2
A08p19610 Brassica napus HOM05D006034 ORTHO05D007535 9.8e-96 354.4 321 65.4
arahy.Tifrunner.gnm1.ann1.JYMB6X Arachis hypogaea HOM05D006034 ORTHO05D007535 3.7e-95 352.4 240 70.4
BraA08t33919Z Brassica rapa HOM05D006034 ORTHO05D007535 3.7e-95 352.4 333 64.6
Sed0009633 Sechium edule HOM05D006034 ORTHO05D007535 6.3e-95 351.7 238 68.9
SEGI_04673 Sequoiadendron giganteum HOM05D006034 ORTHO05D007535 6.3e-95 351.7 258 62.4
arahy.Tifrunner.gnm1.ann1.VJWZ4U Arachis hypogaea HOM05D006034 ORTHO05D007535 1.1e-94 350.9 240 69.6
BolC3t21232H Brassica oleracea HOM05D006034 ORTHO05D007535 2.4e-94 349.7 335 65.1
Lalb_Chr24g0393801 Lupinus albus HOM05D006034 ORTHO05D007535 2.4e-94 349.7 233 68.2
Nitab4.5_0000540g0250 Nicotiana tabacum HOM05D006034 ORTHO05D007535 2.4e-94 349.7 340 67.6
C03p89230 Brassica napus HOM05D006034 ORTHO05D007535 3.1e-94 349.4 335 64.8
Carub.0007s1101 Capsella rubella HOM05D006034 ORTHO05D007535 9.2e-94 347.8 324 56.5
Glyma.07G128800 Glycine max HOM05D006034 ORTHO05D007535 1.6e-93 347.1 237 68.4
TPR.G35498 Trifolium pratense HOM05D006034 ORTHO05D007535 1.6e-93 347.1 239 66.1
BcaC01g01176 Brassica carinata HOM05D006034 ORTHO05D007535 2.0e-93 346.7 333 64.3
AL7G22860 Arabidopsis lyrata HOM05D006034 ORTHO05D007535 3.5e-93 345.9 333 63.1
Sp7g27400 Schrenkiella parvula HOM05D006034 ORTHO05D007535 3.5e-93 345.9 333 63.4
Psat1g049600 Pisum sativum HOM05D006034 ORTHO05D007535 4.5e-93 345.5 238 67.6
PGR142G3838 Punica granatum HOM05D006034 ORTHO05D007535 4.5e-93 345.5 256 66.4
BcaB03g12611 Brassica carinata HOM05D006034 ORTHO05D007535 5.9e-93 345.1 331 63.4
Medtr4g036675 Medicago truncatula HOM05D006034 ORTHO05D007535 1.0e-92 344.4 238 66.4
CsaV3_1G040270 Cucumis sativus L. HOM05D006034 ORTHO05D007535 6.6e-92 341.7 221 70.1
CARHR237370 Cardamine hirsuta HOM05D006034 ORTHO05D007535 2.5e-91 339.7 324 62.0
Zm00001eb361670 Zea mays HOM05D006034 ORTHO05D007535 2.5e-91 339.7 301 62.8
THA.LOC104827538 Tarenaya hassleriana HOM05D006034 ORTHO05D007535 1.2e-90 337.4 314 62.7
Hma1.2p1_0800F.1_g219990 Hydrangea macrophylla HOM05D006034 ORTHO05D007535 1.8e-89 333.6 193 80.8
VMungo0464G0679 Vigna mungo HOM05D006034 ORTHO05D007535 1.8e-89 333.6 235 66.0
Pp3c5_18660 Physcomitrium patens HOM05D006034 ORTHO05D007535 8.3e-87 324.7 252 57.5
MSTRG.19527 Avicennia marina HOM05D006034 ORTHO05D007535 5.4e-86 322.0 203 75.9
FAN28G0362 Fragaria x ananassa HOM05D006034 ORTHO05D007535 5.0e-84 315.5 249 71.9
SMO118G0489 Selaginella moellendorffii HOM05D006034 ORTHO05D007535 4.3e-83 312.4 244 58.6
Duzib150G0162 Durio zibethinus HOM05D006034 ORTHO05D007535 7.3e-83 311.6 306 61.1
Nitab4.5_0011903g0020 Nicotiana tabacum HOM05D006034 ORTHO05D007535 9.5e-83 311.2 348 62.4
Thecc.09G091900 Theobroma cacao HOM05D006034 ORTHO05D007535 2.9e-79 299.7 203 73.9
EL10Ac8g19307 Beta vulgaris HOM05D006034 ORTHO05D007535 1.9e-78 297.0 194 71.6
SalBow6G0258 Salvia bowleyana HOM05D006034 ORTHO05D007535 7.0e-78 295.0 238 63.4
Nn8g38904 Nelumbo nucifera HOM05D006034 ORTHO05D007535 9.2e-78 294.7 335 54.9
vmacro17221 Vaccinium macrocarpon HOM05D006034 ORTHO05D007535 1.2e-77 294.3 333 56.5
CBR_g36936 Chara braunii HOM05D006034 ORTHO05D007535 7.8e-77 291.6 255 53.3
AagrBONN_evm.TU.Sc2ySwM_228.1841 Anthoceros agrestis HOM05D006034 ORTHO05D007535 6.6e-76 288.5 286 49.7
ClCG03G015740 Citrullus lanatus HOM05D000085 ORTHO05D001756 3.1e-73 279.6 301 57.1
Aa31LG2G20940 Aethionema arabicum HOM05D006034 ORTHO05D007535 4.0e-73 279.3 281 54.4
BcaC09g51741 Brassica carinata HOM05D000577 ORTHO05D007535 4.4e-72 275.8 237 60.8
Glyma.01G003200 Glycine max HOM05D006034 ORTHO05D007535 4.9e-71 272.3 203 65.5
Thhalv10025613m.g Eutrema salsugineum HOM05D006034 ORTHO05D007535 4.1e-70 269.2 251 57.0
CDE05G1399 Ceratophyllum demersum HOM05D006034 ORTHO05D007535 6.6e-68 261.9 289 55.4
Haze_25892 Corylus avellana HOM05D006034 ORTHO05D007535 2.5e-67 260.0 341 52.5
CsaV3_UNG066530 Cucumis sativus L. HOM05D006034 ORTHO05D007535 4.3e-67 259.2 168 69.0
Atru.chr7.1566 Acer truncatum HOM05D006034 ORTHO05D007535 5.6e-67 258.8 253 65.2
Sed0024135 Sechium edule HOM05D006034 ORTHO05D007535 2.6e-64 250.0 216 68.5
Hund24744 Selenicereus undatus HOM05D006034 ORTHO05D007535 4.1e-62 242.7 309 46.3
Peaxi162Scf00498g00128 Petunia axillaris HOM05D006034 ORTHO05D007535 1.0e-60 238.0 131 88.5
Ca_25619_v3 Cicer arietinum L. HOM05D006034 ORTHO05D007535 3.9e-60 236.1 148 69.6
Sc18g0001930 Simmondsia chinensis HOM05D006034 ORTHO05D007535 1.2e-58 231.1 263 55.9
Hma1.2p1_0800F.1_g219980 Hydrangea macrophylla HOM05D006034 ORTHO05D007535 1.8e-57 227.3 164 80.5
AUR62027411 Chenopodium quinoa HOM05D006034 ORTHO05D007535 3.4e-56 223.0 191 58.6
DCAR_011988 Daucus carota HOM05D006034 ORTHO05D007535 2.2e-55 220.3 325 48.0
C01p09780 Brassica napus HOM05D006034 ORTHO05D007535 9.3e-54 214.9 212 53.8
THA.LOC104814611 Tarenaya hassleriana HOM05D006034 ORTHO05D007535 1.3e-50 204.5 218 52.3
Phvul.004G171500 Phaseolus vulgaris HOM05D006034 ORTHO05D007535 6.2e-50 202.2 136 69.9
MD13G1273400 Malus domestica HOM05D006034 ORTHO05D007535 8.1e-50 201.8 157 63.7
TWI34G0201 Tripterygium wilfordii HOM05D006034 ORTHO05D007535 4.5e-48 196.1 124 67.7
PRCOL_00006271 Prasinoderma coloniale HOM05D006034 ORTHO05D007535 2.4e-46 190.3 251 40.2
Rhsim05G0022600 Rhododendron simsii HOM05D000085 ORTHO05D001756 5.4e-46 189.1 236 49.2
C01p09940 Brassica napus HOM05D000577 ORTHO05D007535 6.0e-45 185.7 258 42.2
CSS0015474 Camellia sinensis var. sinensis HOM05D006034 ORTHO05D007535 2.8e-42 176.8 179 67.0
BcaC09g52218 Brassica carinata HOM05D006034 ORTHO05D007535 1.7e-39 167.5 135 57.8
AT4G29540 Arabidopsis thaliana HOM05D006034 ORTHO05D007535 8.4e-39 165.2 196 60.7
BolC1t00956H Brassica oleracea HOM05D000577 ORTHO05D001093 6.7e-36 155.6 258 37.6
MBI01_g02257_MAGBIO Magnolia biondii HOM05D006034 ORTHO05D007535 2.1e-34 150.6 237 37.1
Ca_29456_v3 Cicer arietinum L. HOM05D003386 ORTHO05D007535 1.4e-33 147.9 248 35.5
CSS0007101 Camellia sinensis var. sinensis HOM05D006034 ORTHO05D007535 5.8e-32 142.5 102 71.6
C01p09900 Brassica napus HOM05D006034 ORTHO05D007535 3.9e-28 129.8 121 55.4
arahy.Tifrunner.gnm1.ann1.ZF8ARW Arachis hypogaea HOM05D006034 ORTHO05D007535 2.5e-27 127.1 91 64.8
arahy.Tifrunner.gnm1.ann1.N9NTP8 Arachis hypogaea HOM05D000344 ORTHO05D005296 1.6e-26 124.4 91 64.8
arahy.Tifrunner.gnm1.ann1.9T8A1S Arachis hypogaea HOM05D006034 ORTHO05D007535 1.4e-25 121.3 91 63.7
arahy.Tifrunner.gnm1.ann1.4X02I9 Arachis hypogaea HOM05D006034 ORTHO05D007535 3.1e-25 120.2 91 62.6
unitig_27.g24727 Utricularia gibba HOM05D006034 ORTHO05D007535 2.1e-21 107.5 112 66.1
THA.LOC109116077 Tarenaya hassleriana HOM05D006034 ORTHO05D007535 7.9e-21 105.5 120 50.0
BolC1t00940H Brassica oleracea HOM05D006034 ORTHO05D007535 5.1e-20 102.8 83 51.8
MD17G1181800 Malus domestica HOM05D006034 ORTHO05D007535 5.7e-19 99.4 62 75.8
Haze_27155 Corylus avellana HOM05D003386 ORTHO05D007535 1.7e-18 97.8 225 34.2
Hma1.2p1_0800F.1_g220000 Hydrangea macrophylla HOM05D006034 ORTHO05D007535 1.2e-16 91.7 67 68.7
arahy.Tifrunner.gnm1.ann1.UHY7MZ Arachis hypogaea HOM05D006034 ORTHO05D005279 5.0e-15 86.3 92 53.3
CsaV3_UNG066540 Cucumis sativus L. HOM05D006034 ORTHO05D007535 2.5e-14 84.0 65 60.0
arahy.Tifrunner.gnm1.ann1.RIAB4B Arachis hypogaea HOM05D006034 ORTHO05D007535 3.6e-13 80.1 51 72.5
arahy.Tifrunner.gnm1.ann1.C7GQ4M Arachis hypogaea HOM05D006034 ORTHO05D007535 4.8e-10 69.7 57 57.9
BraA01t00799Z Brassica rapa HOM05D006034 ORTHO05D007535 3.4e-08 63.5 120 35.8
Dinv36751 Davidia involucrata HOM05D006034 ORTHO05D007535 4.5e-08 63.2 51 60.8


User provided reference genes

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