Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen12g003500 Solanum pennellii HOM05D007850 ORTHO05D009594 3.2e-31 137.9 75 100.0
Solyc12g008560.1 Solanum lycopersicum HOM05D007850 ORTHO05D009594 1.3e-27 125.9 81 91.4
PGSC0003DMG400000292 Solanum tuberosum HOM05D007850 ORTHO05D009594 1.2e-25 119.4 81 86.4
Nitab4.5_0003079g0010 Nicotiana tabacum HOM05D007850 ORTHO05D009594 2.0e-17 92.0 78 67.9
Nitab4.5_0000566g0200 Nicotiana tabacum HOM05D007850 ORTHO05D009594 1.0e-16 89.7 78 66.7
CAN.G2021.4 Capsicum annuum HOM05D007850 ORTHO05D009594 6.5e-16 87.0 79 63.3
CAN.G1357.32 Capsicum annuum HOM05D007850 ORTHO05D009594 1.5e-15 85.9 78 64.1
CAN.G1591.18 Capsicum annuum HOM05D007850 ORTHO05D009594 1.9e-15 85.5 76 65.8
CAN.G1677.12 Capsicum annuum HOM05D007850 ORTHO05D009594 1.9e-15 85.5 69 71.0
Peaxi162Scf00944g00009 Petunia axillaris HOM05D007850 ORTHO05D009594 7.2e-15 83.6 78 65.4
CAN.G1349.15 Capsicum annuum HOM05D007850 ORTHO05D009594 2.3e-13 78.6 76 63.2
CAN.G1084.1 Capsicum annuum HOM05D007850 ORTHO05D009594 4.0e-13 77.8 76 61.8
Gohir.D07G009300 Gossypium hirsutum HOM05D007850 ORTHO05D009594 8.3e-11 70.1 73 61.6
Gorai.001G009500 Gossypium raimondii HOM05D007850 ORTHO05D009594 8.3e-11 70.1 73 61.6
Lalb_Chr22g0352511 Lupinus albus HOM05D007850 ORTHO05D009594 1.4e-10 69.3 72 55.6
Actinidia17514 Actinidia chinensis HOM05D007850 ORTHO05D009594 1.8e-10 68.9 74 56.8
ClCG03G016060 Citrullus lanatus HOM05D007850 ORTHO05D009594 1.8e-10 68.9 66 62.1
Gohir.D08G264200 Gossypium hirsutum HOM05D007850 ORTHO05D009594 2.4e-10 68.6 76 57.9
Gorai.004G282100 Gossypium raimondii HOM05D007850 ORTHO05D009594 2.4e-10 68.6 76 57.9
Gohir.A07G009000 Gossypium hirsutum HOM05D007850 ORTHO05D009594 3.1e-10 68.2 73 60.3
Sed0003200 Sechium edule HOM05D007850 ORTHO05D009594 4.1e-10 67.8 68 58.8
Cpa.g.sc78.26 Carica papaya HOM05D007850 ORTHO05D009594 7.0e-10 67.0 73 57.5
MELO3C015421.2 Cucumis melo HOM05D007850 ORTHO05D009594 7.0e-10 67.0 74 55.4
Duzib168G0149 Durio zibethinus HOM05D007850 ORTHO05D009594 7.0e-10 67.0 73 58.9
Manes.03G028100 Manihot esculenta HOM05D007850 ORTHO05D009594 7.0e-10 67.0 73 56.2
arahy.Tifrunner.gnm1.ann1.X02Y3Q Arachis hypogaea HOM05D007850 ORTHO05D009594 1.6e-09 65.9 66 59.1
DCAR_000091 Daucus carota HOM05D007850 ORTHO05D009594 1.6e-09 65.9 69 58.0
DCAR_012032 Daucus carota HOM05D007850 ORTHO05D009594 1.6e-09 65.9 69 58.0
Eucgr.K01055 Eucalyptus grandis HOM05D007850 ORTHO05D009594 1.6e-09 65.9 77 53.2
Gohir.A08G243300 Gossypium hirsutum HOM05D007850 ORTHO05D009594 2.7e-09 65.1 76 56.6
CSS0000041 Camellia sinensis var. sinensis HOM05D007850 ORTHO05D009594 3.5e-09 64.7 69 58.0
DCAR_012035 Daucus carota HOM05D007850 ORTHO05D009594 3.5e-09 64.7 69 58.0
Lj2g0008653 Lotus japonicus HOM05D007850 ORTHO05D009594 3.5e-09 64.7 66 56.1
Lsat_1_v5_gn_7_39541 Lactuca sativa HOM05D007850 ORTHO05D009594 4.5e-09 64.3 74 55.4
Thecc.09G099000 Theobroma cacao HOM05D007850 ORTHO05D009594 4.5e-09 64.3 73 57.5
COL.COLO4_34726 Corchorus olitorius HOM05D007850 ORTHO05D009594 5.9e-09 63.9 47 70.2
Psat1g048160 Pisum sativum HOM05D007850 ORTHO05D009594 5.9e-09 63.9 73 53.4
arahy.Tifrunner.gnm1.ann1.X1KXE8 Arachis hypogaea HOM05D012186 ORTHO05D009594 7.7e-09 63.5 73 52.1
Hma1.2p1_0208F.1_g088080 Hydrangea macrophylla HOM05D007850 ORTHO05D009594 7.7e-09 63.5 66 53.0
EL10Ac8g18368 Beta vulgaris HOM05D007850 ORTHO05D009594 1.0e-08 63.2 75 57.3
Ca_25585_v3 Cicer arietinum L. HOM05D007850 ORTHO05D009594 1.0e-08 63.2 73 53.4
Cc06_g10600 Coffea canephora HOM05D007850 ORTHO05D009594 1.0e-08 63.2 68 51.5
Glyma.07G125500 Glycine max HOM05D007850 ORTHO05D009594 1.0e-08 63.2 66 54.5
Potri.015G106700 Populus trichocarpa HOM05D007850 ORTHO05D009594 1.0e-08 63.2 72 54.2
Phvul.004G174800 Phaseolus vulgaris HOM05D007850 ORTHO05D009594 1.7e-08 62.4 71 53.5
Rhsim05G0038300 Rhododendron simsii HOM05D007850 ORTHO05D009594 1.7e-08 62.4 77 49.4
Sc18g0001560 Simmondsia chinensis HOM05D007850 ORTHO05D009594 1.7e-08 62.4 74 51.4
CDE06G1893 Ceratophyllum demersum HOM05D007850 ORTHO05D009594 2.9e-08 61.6 35 82.9
CsaV3_1G039900 Cucumis sativus L. HOM05D007850 ORTHO05D009594 2.9e-08 61.6 62 59.7
Gohir.A06G068000 Gossypium hirsutum HOM05D007850 ORTHO05D009594 3.8e-08 61.2 73 53.4
SalBow6G1226 Salvia bowleyana HOM05D007850 ORTHO05D009594 5.0e-08 60.8 73 49.3
Glyma.01G006200 Glycine max HOM05D007850 ORTHO05D009594 6.5e-08 60.5 66 54.5
Haze_25835 Corylus avellana HOM05D007850 ORTHO05D009594 8.5e-08 60.1 72 52.8
Gohir.D06G066600 Gossypium hirsutum HOM05D007850 ORTHO05D009594 8.5e-08 60.1 66 54.5
Gorai.010G078100 Gossypium raimondii HOM05D007850 ORTHO05D009594 8.5e-08 60.1 66 54.5
Nn8g39046 Nelumbo nucifera HOM05D007850 ORTHO05D009594 1.1e-07 59.7 68 54.4
Sabra12G0079700 Salix brachista HOM05D007850 ORTHO05D009594 1.5e-07 59.3 72 52.8
Cfa003164 Carpinus fangiana HOM05D007850 ORTHO05D009594 2.5e-07 58.5 73 52.1
FvH4_1g06390 Fragaria vesca HOM05D007850 ORTHO05D009594 2.5e-07 58.5 61 54.1
FAN19G1200 Fragaria x ananassa HOM05D007850 ORTHO05D009594 2.5e-07 58.5 61 54.1
RcHm_v2.0_Chr2g0092131 Rosa chinensis HOM05D007850 ORTHO05D009594 2.5e-07 58.5 68 52.9
CANSAT56G2953 Cannabis sativa HOM05D007850 ORTHO05D009594 3.2e-07 58.2 75 52.0
FAN23G2338 Fragaria x ananassa HOM05D007850 ORTHO05D009594 5.5e-07 57.4 61 52.5
FAN26G0602 Fragaria x ananassa HOM05D007850 ORTHO05D009594 5.5e-07 57.4 61 52.5
FAN26G2005 Fragaria x ananassa HOM05D007850 ORTHO05D009594 5.5e-07 57.4 61 52.5
FAN28G1089 Fragaria x ananassa HOM05D007850 ORTHO05D009594 7.2e-07 57.0 61 52.5
QL08p048105 Quercus lobata HOM05D007850 ORTHO05D009594 7.2e-07 57.0 74 48.6
Prupe.7G218200 Prunus persica HOM05D007850 ORTHO05D009594 1.2e-06 56.2 78 47.4
TAR624G0098 Trochodendron aralioides HOM05D007850 ORTHO05D009594 2.1e-06 55.5 73 46.6
Ciclev10006350m.g Citrus clementina HOM05D007850 ORTHO05D009594 3.6e-06 54.7 54 55.6
Ciclev10010071m.g Citrus clementina HOM05D007850 ORTHO05D009594 4.7e-06 54.3 68 51.5
Actinidia21359 Actinidia chinensis HOM05D007850 ORTHO05D009594 8.0e-06 53.5 45 66.7
AUR62010878 Chenopodium quinoa HOM05D007850 ORTHO05D009594 8.0e-06 53.5 76 47.4


User provided reference genes

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