Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen12g002170 Solanum pennellii HOM05D006736 ORTHO05D008459 8.6e-48 193.4 100 100.0
Solyc12g006220.3 Solanum lycopersicum HOM05D006736 ORTHO05D008459 7.3e-47 190.3 100 99.0
Peaxi162Scf00047g02119 Petunia axillaris HOM05D006736 ORTHO05D008459 6.4e-35 150.6 97 79.4
Peaxi162Scf01164g00020 Petunia axillaris HOM05D006736 ORTHO05D008459 2.4e-21 105.5 100 62.0
Oeu036994.1 Olea europaea HOM05D006736 ORTHO05D008459 1.2e-17 93.2 78 62.8
Nitab4.5_0001229g0080 Nicotiana tabacum HOM05D006736 ORTHO05D008459 2.7e-17 92.0 68 70.6
CSS0010283 Camellia sinensis var. sinensis HOM05D006736 ORTHO05D008459 7.9e-17 90.5 79 57.0
Hma1.2p1_0599F.1_g186970 Hydrangea macrophylla HOM05D006736 ORTHO05D008459 2.3e-16 89.0 71 69.0
SGA_v2.0_scaffold49G18393 Striga asiatica HOM05D006736 ORTHO05D008459 2.3e-16 89.0 89 59.6
Sopen07g023750 Solanum pennellii HOM05D006736 ORTHO05D008459 3.0e-16 88.6 100 55.0
CSS0024852 Camellia sinensis var. sinensis HOM05D006736 ORTHO05D008459 3.9e-16 88.2 79 65.8
CSS0048788 Camellia sinensis var. sinensis HOM05D006736 ORTHO05D008459 5.1e-16 87.8 79 65.8
Migut.M00067 Erythranthe guttata HOM05D006736 ORTHO05D008459 3.3e-15 85.1 94 56.4
TAR624G0983 Trochodendron aralioides HOM05D006736 ORTHO05D008459 5.6e-15 84.3 84 58.3
Rhsim06G0178800 Rhododendron simsii HOM05D006736 ORTHO05D008459 2.8e-14 82.0 68 67.6
Solyc07g045200.1 Solanum lycopersicum HOM05D006736 ORTHO05D008459 1.1e-13 80.1 62 67.7
SGA_v2.0_scaffold73G24482 Striga asiatica HOM05D002257 ORTHO05D002417 1.8e-13 79.3 91 52.7
Manes.05G200400 Manihot esculenta HOM05D006736 ORTHO05D008459 3.8e-11 71.6 59 66.1
Migut.H01277 Erythranthe guttata HOM05D006736 ORTHO05D008459 6.5e-11 70.9 74 56.8
MBI14_g39127_MAGBIO Magnolia biondii HOM05D006736 ORTHO05D008459 6.5e-11 70.9 90 48.9
DCAR_008749 Daucus carota HOM05D006736 ORTHO05D008459 8.4e-11 70.5 99 46.5
Aqoxy4G01886 Aquilegia oxysepala HOM05D006736 ORTHO05D008459 1.1e-10 70.1 77 57.1
Lj6g0005510 Lotus japonicus HOM05D006736 ORTHO05D008459 1.4e-10 69.7 89 42.7
ClCG09G021530 Citrullus lanatus HOM05D006736 ORTHO05D008459 1.2e-09 66.6 68 57.4
Sabra16G0244100 Salix brachista HOM05D006736 ORTHO05D008459 1.2e-09 66.6 97 43.3
Medtr3g461010 Medicago truncatula HOM05D006736 ORTHO05D008459 1.6e-09 66.2 83 48.2
Sc03g0011540 Simmondsia chinensis HOM05D006736 ORTHO05D008459 2.1e-09 65.9 78 48.7
TPR.G17947 Trifolium pratense HOM05D006736 ORTHO05D008459 2.1e-09 65.9 77 48.1
Haze_09864 Corylus avellana HOM05D004577 ORTHO05D005062 2.7e-09 65.5 76 53.9
GSVIVG01014741001 Vitis vinifera HOM05D006736 ORTHO05D008459 2.7e-09 65.5 81 48.1
CsaV3_7G023850 Cucumis sativus L. HOM05D006736 ORTHO05D008459 3.5e-09 65.1 67 56.7
Glyma.08G332400 Glycine max HOM05D006736 ORTHO05D008459 3.5e-09 65.1 82 48.8
Lalb_Chr20g0114121 Lupinus albus HOM05D006736 ORTHO05D008459 3.5e-09 65.1 83 49.4
Lsat_1_v5_gn_5_122340 Lactuca sativa HOM05D006736 ORTHO05D008459 4.6e-09 64.7 97 47.4
LjContig00081g0022969 Lotus japonicus HOM05D006736 ORTHO05D008459 6.0e-09 64.3 78 44.9
Cfa021889 Carpinus fangiana HOM05D006736 ORTHO05D008459 1.0e-08 63.5 76 52.6
Duzib170G0862 Durio zibethinus HOM05D006736 ORTHO05D008459 1.0e-08 63.5 80 53.8
Lalb_Chr15g0082301 Lupinus albus HOM05D006736 ORTHO05D008459 1.3e-08 63.2 54 63.0
ECA234G2793 Erigeron canadensis HOM05D006736 ORTHO05D008459 1.8e-08 62.8 90 48.9
Duzib268G0079 Durio zibethinus HOM05D006736 ORTHO05D008459 2.3e-08 62.4 80 52.5
Eucgr.F02027 Eucalyptus grandis HOM05D006736 ORTHO05D008459 2.3e-08 62.4 79 46.8
Glyma.14G011700 Glycine max HOM05D006736 ORTHO05D008459 3.9e-08 61.6 99 39.4
Glyma.18G074500 Glycine max HOM05D006736 ORTHO05D008459 3.9e-08 61.6 52 59.6
VMungo0540G0896 Vigna mungo HOM05D006736 ORTHO05D008459 3.9e-08 61.6 74 48.6
Gohir.D01G078200 Gossypium hirsutum HOM05D006736 ORTHO05D008459 5.1e-08 61.2 80 50.0
Gorai.002G102800 Gossypium raimondii HOM05D006736 ORTHO05D008459 5.1e-08 61.2 80 50.0
Manes.01G003400 Manihot esculenta HOM05D006736 ORTHO05D008459 5.1e-08 61.2 84 51.2
Phvul.006G059230 Phaseolus vulgaris HOM05D006736 ORTHO05D008459 5.1e-08 61.2 68 48.5
Aqoxy3G01230 Aquilegia oxysepala HOM05D007247 ORTHO05D009208 6.7e-08 60.8 45 60.0
Cpa.g.sc12.109 Carica papaya HOM05D006736 ORTHO05D008459 6.7e-08 60.8 66 54.5
EL10Ac4g07540 Beta vulgaris HOM05D006736 ORTHO05D008459 8.7e-08 60.5 93 44.1
MELO3C024968.2 Cucumis melo HOM05D006736 ORTHO05D008459 8.7e-08 60.5 58 58.6
TWI38G1827 Tripterygium wilfordii HOM05D006736 ORTHO05D008459 8.7e-08 60.5 55 65.5
ClCG10G003900 Citrullus lanatus HOM05D006736 ORTHO05D008459 1.1e-07 60.1 54 57.4
ClCG10G004060 Citrullus lanatus HOM05D006736 ORTHO05D008459 1.1e-07 60.1 54 57.4
MELO3C014070.2 Cucumis melo HOM05D006736 ORTHO05D008459 1.5e-07 59.7 53 54.7
FAN25G3397 Fragaria x ananassa HOM05D006736 ORTHO05D008459 1.5e-07 59.7 93 44.1
Gohir.A01G093700 Gossypium hirsutum HOM05D006736 ORTHO05D008459 1.5e-07 59.7 80 48.8
Sp3g11420 Schrenkiella parvula HOM05D006736 ORTHO05D008459 1.5e-07 59.7 89 43.8
A10p13210 Brassica napus HOM05D006736 ORTHO05D008459 1.9e-07 59.3 98 40.8
COL.COLO4_07740 Corchorus olitorius HOM05D006736 ORTHO05D008459 1.9e-07 59.3 84 47.6
BraA10t43419Z Brassica rapa HOM05D006736 ORTHO05D008459 2.5e-07 58.9 98 40.8
CsaV3_3G003890 Cucumis sativus L. HOM05D006736 ORTHO05D008459 2.5e-07 58.9 53 54.7
FvH4_3g42280 Fragaria vesca HOM05D006736 ORTHO05D008459 2.5e-07 58.9 90 44.4
FAN11G0661 Fragaria x ananassa HOM05D006736 ORTHO05D008459 2.5e-07 58.9 90 44.4
Potri.001G371400 Populus trichocarpa HOM05D006736 ORTHO05D008459 2.5e-07 58.9 72 48.6
QL08p003180 Quercus lobata HOM05D006736 ORTHO05D008459 2.5e-07 58.9 93 45.2
Sed0014616 Sechium edule HOM05D006736 ORTHO05D008459 2.5e-07 58.9 57 54.4
FAN21G1732 Fragaria x ananassa HOM05D006736 ORTHO05D008459 3.3e-07 58.5 90 44.4
ATR0751G116 Amborella trichopoda HOM05D006736 ORTHO05D008459 4.3e-07 58.2 56 57.1
Thhalv10021795m.g Eutrema salsugineum HOM05D006736 ORTHO05D008459 4.3e-07 58.2 55 58.2
FAN16G2066 Fragaria x ananassa HOM05D002691 ORTHO05D003304 5.7e-07 57.8 87 44.8
MD03G1035000 Malus domestica HOM05D006736 ORTHO05D008459 5.7e-07 57.8 61 59.0
AL8G31560 Arabidopsis lyrata HOM05D006736 ORTHO05D008459 7.4e-07 57.4 58 55.2
AT3G13227 Arabidopsis thaliana HOM05D006736 ORTHO05D008459 7.4e-07 57.4 51 60.8
BcaB04g18747 Brassica carinata HOM05D006736 ORTHO05D008459 7.4e-07 57.4 54 59.3
Psat5g166560 Pisum sativum HOM05D006736 ORTHO05D008459 7.4e-07 57.4 61 55.7
BcaB08g35964 Brassica carinata HOM05D006736 ORTHO05D008459 9.6e-07 57.0 63 52.4
Thhalv10015819m.g Eutrema salsugineum HOM05D006736 ORTHO05D008459 9.6e-07 57.0 98 41.8
Sabra11G0088600 Salix brachista HOM05D006736 ORTHO05D008459 9.6e-07 57.0 68 51.5
CARHR087850 Cardamine hirsuta HOM05D006736 ORTHO05D008459 1.3e-06 56.6 49 63.3
Ciclev10010675m.g Citrus clementina HOM05D006736 ORTHO05D008459 1.3e-06 56.6 59 59.3
TWI39G1297 Tripterygium wilfordii HOM05D006736 ORTHO05D008459 1.3e-06 56.6 43 72.1
Prupe.6G028200 Prunus persica HOM05D006736 ORTHO05D008459 1.6e-06 56.2 97 44.3
Sp6g17830 Schrenkiella parvula HOM05D006736 ORTHO05D008459 1.6e-06 56.2 85 44.7
arahy.Tifrunner.gnm1.ann1.FR49Y0 Arachis hypogaea HOM05D006736 ORTHO05D008459 2.1e-06 55.8 49 61.2
arahy.Tifrunner.gnm1.ann1.P4RFEM Arachis hypogaea HOM05D006736 ORTHO05D008459 2.1e-06 55.8 49 61.2
BcaC01g04005 Brassica carinata HOM05D006736 ORTHO05D008459 2.1e-06 55.8 70 51.4
A03p38090 Brassica napus HOM05D006736 ORTHO05D008459 2.1e-06 55.8 70 51.4
C03p46220 Brassica napus HOM05D006736 ORTHO05D008459 2.1e-06 55.8 70 51.4
BolC3t16893H Brassica oleracea HOM05D006736 ORTHO05D008459 2.1e-06 55.8 70 51.4
BraA03t12962Z Brassica rapa HOM05D006736 ORTHO05D008459 2.1e-06 55.8 70 51.4
CARHR269350 Cardamine hirsuta HOM05D006736 ORTHO05D008459 2.1e-06 55.8 56 57.1
Gohir.A13G130900 Gossypium hirsutum HOM05D006736 ORTHO05D008459 2.1e-06 55.8 62 54.8
PGR083G0815 Punica granatum HOM05D006736 ORTHO05D008459 2.1e-06 55.8 42 66.7
Ah.06g181490 Amaranthus hybridus HOM05D006736 ORTHO05D008459 2.8e-06 55.5 49 63.3
AT5G55980 Arabidopsis thaliana HOM05D006736 ORTHO05D008459 2.8e-06 55.5 63 50.8
CiPaw.06G067400 Carya illinoinensis HOM05D007247 ORTHO05D009208 2.8e-06 55.5 44 59.1
AL3G25020 Arabidopsis lyrata HOM05D006736 ORTHO05D008459 3.7e-06 55.1 90 44.4
QL03p057801 Quercus lobata HOM05D007247 ORTHO05D009208 3.7e-06 55.1 45 62.2
SalBow8G0600 Salvia bowleyana HOM05D007247 ORTHO05D009208 3.7e-06 55.1 52 57.7
Thecc.07G008000 Theobroma cacao HOM05D006736 ORTHO05D008459 3.7e-06 55.1 48 60.4
BcaC04g20175 Brassica carinata HOM05D006736 ORTHO05D008459 4.8e-06 54.7 99 40.4
Cfa009218 Carpinus fangiana HOM05D007247 ORTHO05D009208 4.8e-06 54.7 51 54.9
Medtr5g032790 Medicago truncatula HOM05D007247 ORTHO05D009208 4.8e-06 54.7 36 69.4
TAR629G1528 Trochodendron aralioides HOM05D007247 ORTHO05D009208 4.8e-06 54.7 51 52.9
unitig_8.g3935 Utricularia gibba HOM05D007247 ORTHO05D009208 4.8e-06 54.7 51 51.0
Aqoxy5G03750 Aquilegia oxysepala HOM05D007247 ORTHO05D009208 6.2e-06 54.3 36 63.9
BolC5t34141H Brassica oleracea HOM05D006736 ORTHO05D008459 6.2e-06 54.3 50 58.0
Nn4g22599 Nelumbo nucifera HOM05D007247 ORTHO05D009208 6.2e-06 54.3 57 52.6
Sed0023265 Sechium edule HOM05D006736 ORTHO05D008459 6.2e-06 54.3 67 52.2
C09p46970 Brassica napus HOM05D006736 ORTHO05D008459 8.2e-06 53.9 95 43.2
Carub.0003s1260 Capsella rubella HOM05D006736 ORTHO05D008459 8.2e-06 53.9 49 57.1
Gohir.D13G134200 Gossypium hirsutum HOM05D006736 ORTHO05D008459 8.2e-06 53.9 62 53.2
Gorai.013G150500 Gossypium raimondii HOM05D006736 ORTHO05D008459 8.2e-06 53.9 62 53.2
Oeu001697.1 Olea europaea HOM05D007247 ORTHO05D009208 8.2e-06 53.9 55 50.9
TPR.G38802 Trifolium pratense HOM05D007247 ORTHO05D009208 8.2e-06 53.9 36 69.4


User provided reference genes

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