Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen12g002150 Solanum pennellii HOM05D002002 ORTHO05D003658 2.2e-102 376.7 406 100.0
Solyc12g006190.1 Solanum lycopersicum HOM05D002002 ORTHO05D003658 1.5e-98 364.0 406 96.1
PGSC0003DMG400028833 Solanum tuberosum HOM05D002002 ORTHO05D003658 3.1e-88 329.7 406 73.6
Nitab4.5_0001229g0060 Nicotiana tabacum HOM05D002002 ORTHO05D003658 3.6e-60 236.5 186 72.6
Nitab4.5_0013754g0020 Nicotiana tabacum HOM05D002002 ORTHO05D003658 8.9e-59 231.9 175 72.6
Peaxi162Scf00047g02117 Petunia axillaris HOM05D002002 ORTHO05D003658 2.2e-49 200.7 181 64.1
Oeu034272.1 Olea europaea HOM05D002002 ORTHO05D003658 1.7e-33 147.9 173 49.1
Oeu034273.1 Olea europaea HOM05D002002 ORTHO05D003658 1.7e-33 147.9 173 49.1
Cc05_g02030 Coffea canephora HOM05D002002 ORTHO05D003658 1.0e-30 138.7 176 46.6
Migut.M00058 Erythranthe guttata HOM05D002002 ORTHO05D003658 1.3e-30 138.3 177 46.9
Thecc.01G199000 Theobroma cacao HOM05D002002 ORTHO05D003658 1.3e-30 138.3 195 42.6
Gohir.D07G199350 Gossypium hirsutum HOM05D002002 ORTHO05D003658 3.3e-29 133.7 186 45.2
Cfa014206 Carpinus fangiana HOM05D002002 ORTHO05D003658 9.6e-29 132.1 184 40.2
Gohir.A07G193000 Gossypium hirsutum HOM05D002002 ORTHO05D003658 9.6e-29 132.1 186 44.6
Hma1.2p1_0629F.1_g192180 Hydrangea macrophylla HOM05D002002 ORTHO05D003658 1.6e-28 131.3 197 40.6
Actinidia35198 Actinidia chinensis HOM05D002148 ORTHO05D002547 2.1e-28 131.0 189 38.1
Gorai.001G223200 Gossypium raimondii HOM05D002002 ORTHO05D003658 2.8e-28 130.6 186 44.6
MSTRG.14910 Avicennia marina HOM05D002002 ORTHO05D003658 1.8e-27 127.9 140 52.9
CiPaw.03G283400 Carya illinoinensis HOM05D002002 ORTHO05D003658 2.4e-27 127.5 185 38.9
Prupe.3G195300 Prunus persica HOM05D002002 ORTHO05D003658 2.4e-27 127.5 183 41.0
DCAR_021086 Daucus carota HOM05D002002 ORTHO05D003658 5.3e-27 126.3 182 43.4
DCAR_019665 Daucus carota HOM05D002002 ORTHO05D003658 9.0e-27 125.6 181 42.0
MD17G1118900 Malus domestica HOM05D002002 ORTHO05D003658 1.2e-26 125.2 185 41.6
Aqoxy6G00290 Aquilegia oxysepala HOM05D002002 ORTHO05D003658 1.5e-26 124.8 113 52.2
FvH4_6g40440 Fragaria vesca HOM05D002002 ORTHO05D003658 4.4e-26 123.2 203 38.9
FAN09G2779 Fragaria x ananassa HOM05D002002 ORTHO05D003658 9.9e-26 122.1 203 38.9
MD09G1129900 Malus domestica HOM05D002002 ORTHO05D003658 1.3e-25 121.7 191 41.4
FAN05G3832 Fragaria x ananassa HOM05D002002 ORTHO05D003658 1.7e-25 121.3 203 37.9
FAN02G0217 Fragaria x ananassa HOM05D002002 ORTHO05D003658 3.8e-25 120.2 203 36.0
Haze_12592 Corylus avellana HOM05D002002 ORTHO05D003658 4.9e-25 119.8 195 39.5
FAN14G1296 Fragaria x ananassa HOM05D002002 ORTHO05D003658 4.9e-25 119.8 213 39.0
Manes.12G063951 Manihot esculenta HOM05D002002 ORTHO05D003658 4.9e-25 119.8 173 39.9
TAR627G0575 Trochodendron aralioides HOM05D003572 ORTHO05D004118 1.9e-24 117.9 79 63.3
ECA234G3591 Erigeron canadensis HOM05D002002 ORTHO05D003658 3.2e-24 117.1 167 41.3
COL.COLO4_19649 Corchorus olitorius HOM05D002002 ORTHO05D003658 3.5e-23 113.6 98 56.1
HanXRQChr10g0306811 Helianthus annuus HOM05D002002 ORTHO05D003658 4.6e-23 113.2 154 38.3
RcHm_v2.0_Chr2g0155671 Rosa chinensis HOM05D002002 ORTHO05D003658 7.8e-23 112.5 206 35.9
TAR626G0223 Trochodendron aralioides HOM05D002002 ORTHO05D003658 7.8e-23 112.5 179 38.0
Lsat_1_v5_gn_5_122320 Lactuca sativa HOM05D002002 ORTHO05D003658 1.3e-22 111.7 135 44.4
Cpa.g.sc136.48 Carica papaya HOM05D002002 ORTHO05D003658 8.7e-22 109.0 166 40.4
MBI15_g44612_MAGBIO Magnolia biondii HOM05D002002 ORTHO05D003658 8.7e-22 109.0 144 43.1
Potri.002G217100 Populus trichocarpa HOM05D002002 ORTHO05D003658 5.6e-21 106.3 212 36.3
Potri.014G170000 Populus trichocarpa HOM05D002002 ORTHO05D003658 1.8e-19 101.3 192 38.0
Ciclev10017528m.g Citrus clementina HOM05D002002 ORTHO05D003658 6.9e-19 99.4 177 36.2
DCAR_031154 Daucus carota HOM05D002002 ORTHO05D003658 1.8e-14 84.7 165 31.5
TWI36G0682 Tripterygium wilfordii HOM05D002002 ORTHO05D003658 5.1e-14 83.2 81 45.7
Actinidia15095 Actinidia chinensis HOM05D002002 ORTHO05D003658 1.5e-13 81.6 158 32.3
DCAR_024430 Daucus carota HOM05D002002 ORTHO05D008711 1.5e-13 81.6 78 43.6
RcHm_v2.0_Chr4g0432961 Rosa chinensis HOM05D002002 ORTHO05D008711 1.5e-13 81.6 79 46.8
Aqoxy5G03765 Aquilegia oxysepala HOM05D002002 ORTHO05D003658 3.3e-13 80.5 96 36.5
Migut.E00200 Erythranthe guttata HOM05D002002 ORTHO05D003658 3.3e-13 80.5 78 41.0
Gohir.A03G135305 Gossypium hirsutum HOM05D002002 ORTHO05D003658 3.3e-13 80.5 83 41.0
ATR0824G058 Amborella trichopoda HOM05D002002 ORTHO05D003658 4.3e-13 80.1 171 28.7
Dinv24784 Davidia involucrata HOM05D002002 ORTHO05D003658 4.3e-13 80.1 74 47.3
Haze_12247 Corylus avellana HOM05D002002 ORTHO05D008711 9.6e-13 79.0 81 40.7
Lj3C1058T7 Lonicera japonica HOM05D002002 ORTHO05D008711 9.6e-13 79.0 75 46.7
Oeu056712.1 Olea europaea HOM05D002002 ORTHO05D013431 1.6e-12 78.2 169 31.4
FvH4_6g24840 Fragaria vesca HOM05D002002 ORTHO05D003658 2.1e-12 77.8 76 44.7
Manes.13G024400 Manihot esculenta HOM05D002002 ORTHO05D003658 2.1e-12 77.8 76 44.7
FAN05G0600 Fragaria x ananassa HOM05D002002 ORTHO05D003658 2.8e-12 77.4 145 35.2
FAN05G4965 Fragaria x ananassa HOM05D002002 ORTHO05D003658 2.8e-12 77.4 145 35.2
MBI10_g11201_MAGBIO Magnolia biondii HOM05D002002 ORTHO05D003658 2.8e-12 77.4 73 43.8
PGR102G0007 Punica granatum HOM05D002002 ORTHO05D003658 2.8e-12 77.4 174 28.7
Thecc.02G259800 Theobroma cacao HOM05D002002 ORTHO05D003658 3.7e-12 77.0 80 40.0
FAN02G4604 Fragaria x ananassa HOM05D002002 ORTHO05D003658 4.8e-12 76.6 76 43.4
Prupe.1G244300 Prunus persica HOM05D002002 ORTHO05D003658 6.2e-12 76.3 92 37.0
Hma1.2p1_0160F.1_g071270 Hydrangea macrophylla HOM05D002002 ORTHO05D003658 8.1e-12 75.9 71 47.9
Atru.chr11.2098 Acer truncatum HOM05D002002 ORTHO05D003658 1.1e-11 75.5 165 29.1
Cc11_g15730 Coffea canephora HOM05D002002 ORTHO05D008711 1.1e-11 75.5 166 27.1
COL.COLO4_24276 Corchorus olitorius HOM05D002002 ORTHO05D008711 1.1e-11 75.5 97 37.1
Gohir.D02G158850 Gossypium hirsutum HOM05D002002 ORTHO05D003658 1.1e-11 75.5 119 32.8
QL03p058095 Quercus lobata HOM05D002002 ORTHO05D003658 1.1e-11 75.5 99 39.4
QL04p067058 Quercus lobata HOM05D002002 ORTHO05D003658 1.1e-11 75.5 125 38.4
Ciclev10033784m.g Citrus clementina HOM05D002002 ORTHO05D003658 1.4e-11 75.1 76 40.8
Eucgr.B03286 Eucalyptus grandis HOM05D002002 ORTHO05D003658 2.4e-11 74.3 103 35.0
FAN14G2025 Fragaria x ananassa HOM05D002002 ORTHO05D003658 2.4e-11 74.3 76 42.1
MD13G1101500 Malus domestica HOM05D002002 ORTHO05D003658 3.1e-11 73.9 86 37.2
Oeu023068.1 Olea europaea HOM05D002002 ORTHO05D003658 3.1e-11 73.9 83 37.3
VMungo0251G0889 Vigna mungo HOM05D002002 ORTHO05D003658 4.0e-11 73.6 114 34.2
TAR374G1279 Trochodendron aralioides HOM05D002002 ORTHO05D003658 6.9e-11 72.8 69 42.0
Manes.12G023250 Manihot esculenta HOM05D002002 ORTHO05D003658 9.0e-11 72.4 72 43.1
CAN.G832.2 Capsicum annuum HOM05D002002 ORTHO05D008711 1.2e-10 72.0 71 45.1
ClCG08G017700 Citrullus lanatus HOM05D002002 ORTHO05D003658 1.2e-10 72.0 92 39.1
ECA233G4313 Erigeron canadensis HOM05D002002 ORTHO05D008711 1.2e-10 72.0 168 28.0
Cpa.g.sc33.19 Carica papaya HOM05D002002 ORTHO05D008711 1.5e-10 71.6 90 36.7
MELO3C010690.2 Cucumis melo HOM05D002002 ORTHO05D003658 2.6e-10 70.9 80 38.8
Lj6P812T18 Lonicera japonica HOM05D002002 ORTHO05D003658 4.5e-10 70.1 76 43.4
Phvul.003G065000 Phaseolus vulgaris HOM05D002002 ORTHO05D003658 4.5e-10 70.1 114 33.3
Potri.008G186700 Populus trichocarpa HOM05D002002 ORTHO05D003658 4.5e-10 70.1 73 42.5
Potri.010G046225 Populus trichocarpa HOM05D002002 ORTHO05D003658 4.5e-10 70.1 76 40.8
CSS0040170 Camellia sinensis var. sinensis HOM05D002002 ORTHO05D003658 5.8e-10 69.7 94 37.2
CANSAT01G1710 Cannabis sativa HOM05D002002 ORTHO05D003658 5.8e-10 69.7 71 43.7
Sopen05g008380 Solanum pennellii HOM05D002002 ORTHO05D003658 5.8e-10 69.7 71 40.8
Nitab4.5_0003609g0010 Nicotiana tabacum HOM05D002002 ORTHO05D008711 7.6e-10 69.3 96 32.3
CsaV3_2G024930 Cucumis sativus L. HOM05D002002 ORTHO05D003658 1.3e-09 68.6 71 40.8
DCAR_007440 Daucus carota HOM05D007028 ORTHO05D003658 1.3e-09 68.6 84 39.3
Lj4g0014379 Lotus japonicus HOM05D002002 ORTHO05D003658 1.7e-09 68.2 76 38.2
Peaxi162Scf00128g00135 Petunia axillaris HOM05D002002 ORTHO05D008711 2.2e-09 67.8 93 35.5
Glyma.13G369200 Glycine max HOM05D007028 ORTHO05D003658 2.9e-09 67.4 113 35.4
HanXRQChr08g0235831 Helianthus annuus HOM05D007028 ORTHO05D003658 3.8e-09 67.0 82 39.0
Oeu010371.1 Olea europaea HOM05D007028 ORTHO05D003658 6.5e-09 66.2 197 25.9
Sed0021898 Sechium edule HOM05D002002 ORTHO05D003658 8.4e-09 65.9 102 32.4
Dinv23308 Davidia involucrata HOM05D007028 ORTHO05D010012 1.1e-08 65.5 114 35.1
Lsat_1_v5_gn_8_152141 Lactuca sativa HOM05D002002 ORTHO05D008711 1.1e-08 65.5 68 35.3
Glyma.15G004600 Glycine max HOM05D007028 ORTHO05D003658 1.4e-08 65.1 78 39.7
VMungo1080G1428 Vigna mungo HOM05D007028 ORTHO05D003658 1.4e-08 65.1 162 30.2
MELO3C021015.2 Cucumis melo HOM05D007028 ORTHO05D003658 1.9e-08 64.7 82 41.5
Migut.K00599 Erythranthe guttata HOM05D002002 ORTHO05D003658 1.9e-08 64.7 165 26.7
Manes.11G063900 Manihot esculenta HOM05D007028 ORTHO05D003658 1.9e-08 64.7 131 31.3
Nitab4.5_0000007g0050 Nicotiana tabacum HOM05D002002 ORTHO05D008711 1.9e-08 64.7 96 30.2
CsaV3_7G025940 Cucumis sativus L. HOM05D007028 ORTHO05D003658 2.5e-08 64.3 82 39.0
Ca_22584_v3 Cicer arietinum L. HOM05D002002 ORTHO05D008711 3.2e-08 63.9 76 36.8
Thecc.06G037900 Theobroma cacao HOM05D007028 ORTHO05D003658 5.5e-08 63.2 159 27.7
ClCG09G009040 Citrullus lanatus HOM05D007028 ORTHO05D003658 7.1e-08 62.8 96 37.5
MBI04_g44678_MAGBIO Magnolia biondii HOM05D007028 ORTHO05D003658 7.1e-08 62.8 84 39.3
FvH4_6g28900 Fragaria vesca HOM05D007028 ORTHO05D003658 1.2e-07 62.0 81 37.0
FAN02G1822 Fragaria x ananassa HOM05D007028 ORTHO05D003658 1.2e-07 62.0 81 37.0
Lsat_1_v5_gn_8_100120 Lactuca sativa HOM05D007028 ORTHO05D003658 1.2e-07 62.0 76 38.2
ATR0215G032 Amborella trichopoda HOM05D007028 ORTHO05D003658 1.6e-07 61.6 84 36.9
Potri.003G179600 Populus trichocarpa HOM05D007028 ORTHO05D003658 1.6e-07 61.6 94 36.2
Sopen03g036070 Solanum pennellii HOM05D007028 ORTHO05D003658 1.6e-07 61.6 102 34.3
COL.COLO4_26654 Corchorus olitorius HOM05D007028 ORTHO05D003658 2.1e-07 61.2 91 35.2
Ciclev10027378m.g Citrus clementina HOM05D007028 ORTHO05D003658 2.7e-07 60.8 70 41.4
Lj1g0008030 Lotus japonicus HOM05D007028 ORTHO05D003658 2.7e-07 60.8 112 29.5
Oeu009141.2 Olea europaea HOM05D002002 ORTHO05D003658 2.7e-07 60.8 74 33.8
Phvul.005G180900 Phaseolus vulgaris HOM05D007028 ORTHO05D003658 2.7e-07 60.8 114 31.6
MD17G1220000 Malus domestica HOM05D007028 ORTHO05D003658 3.5e-07 60.5 95 33.7
ATR0749G015 Amborella trichopoda HOM05D007028 ORTHO05D003658 4.6e-07 60.1 87 36.8
Peaxi162Scf00107g00204 Petunia axillaris HOM05D007028 ORTHO05D003658 4.6e-07 60.1 156 26.9
PGSC0003DMG402014197 Solanum tuberosum HOM05D007028 ORTHO05D003658 4.6e-07 60.1 92 32.6
ATR0215G020 Amborella trichopoda HOM05D007028 ORTHO05D003658 6.0e-07 59.7 123 30.1
arahy.Tifrunner.gnm1.ann1.SE9SAL Arachis hypogaea HOM05D007028 ORTHO05D003658 6.0e-07 59.7 176 27.3
Lj3g0003871 Lotus japonicus HOM05D007028 ORTHO05D003658 7.9e-07 59.3 75 37.3
Oeu043137.1 Olea europaea HOM05D007028 ORTHO05D003658 7.9e-07 59.3 101 28.7
Sed0022017 Sechium edule HOM05D007028 ORTHO05D003658 7.9e-07 59.3 88 37.5
TPR.G19149 Trifolium pratense HOM05D007028 ORTHO05D003658 7.9e-07 59.3 84 36.9
Zm00001eb064330 Zea mays HOM05D002002 ORTHO05D003658 7.9e-07 59.3 87 33.3
Aqoxy7G01883 Aquilegia oxysepala HOM05D007028 ORTHO05D003658 1.0e-06 58.9 185 27.0
Medtr2g104800 Medicago truncatula HOM05D007028 ORTHO05D003658 1.0e-06 58.9 84 35.7
Peaxi162Scf00332g00034 Petunia axillaris HOM05D007028 ORTHO05D003658 1.0e-06 58.9 92 31.5
QL05p034297 Quercus lobata HOM05D007028 ORTHO05D003658 1.0e-06 58.9 168 29.2
Sopen09g023970 Solanum pennellii HOM05D007028 ORTHO05D003658 1.0e-06 58.9 84 32.1
Zm00001eb210880 Zea mays HOM05D002002 ORTHO05D003658 1.0e-06 58.9 87 32.2
FAN05G3224 Fragaria x ananassa HOM05D007028 ORTHO05D003658 1.3e-06 58.5 74 37.8
FAN09G0870 Fragaria x ananassa HOM05D007028 ORTHO05D003658 1.3e-06 58.5 74 37.8
FAN14G4516 Fragaria x ananassa HOM05D007028 ORTHO05D003658 1.3e-06 58.5 74 37.8
Nitab4.5_0006291g0010 Nicotiana tabacum HOM05D007028 ORTHO05D003658 1.3e-06 58.5 152 28.9
Os06g0568400 Oryza sativa ssp. japonica HOM05D007028 ORTHO05D003658 1.3e-06 58.5 71 38.0
Solyc09g061240.1 Solanum lycopersicum HOM05D007028 ORTHO05D003658 1.3e-06 58.5 84 32.1
Migut.D01094 Erythranthe guttata HOM05D007028 ORTHO05D003658 1.8e-06 58.2 93 34.4
Lj2g0007304 Lotus japonicus HOM05D002002 ORTHO05D003658 2.3e-06 57.8 152 28.3
Actinidia25445 Actinidia chinensis HOM05D007028 ORTHO05D010012 3.0e-06 57.4 88 33.0
Cfa001903 Carpinus fangiana HOM05D007028 ORTHO05D003658 3.0e-06 57.4 146 29.5
Cc04_g04860 Coffea canephora HOM05D007028 ORTHO05D003658 3.0e-06 57.4 88 35.2
Phvul.002G149900 Phaseolus vulgaris HOM05D002002 ORTHO05D003658 3.0e-06 57.4 71 38.0
Prupe.3G095700 Prunus persica HOM05D007028 ORTHO05D003658 3.0e-06 57.4 157 28.7
Psat2g100360 Pisum sativum HOM05D002002 ORTHO05D003658 3.9e-06 57.0 73 39.7
Solyc03g117170.1 Solanum lycopersicum HOM05D007028 ORTHO05D003658 3.9e-06 57.0 147 26.5
PGSC0003DMG400046108 Solanum tuberosum HOM05D007028 ORTHO05D003658 3.9e-06 57.0 116 29.3
Migut.I00721 Erythranthe guttata HOM05D007028 ORTHO05D003658 6.7e-06 56.2 171 25.1
Hma1.2p1_0226F.1_g095710 Hydrangea macrophylla HOM05D007028 ORTHO05D003658 6.7e-06 56.2 76 31.6
Lj2C51T14 Lonicera japonica HOM05D007028 ORTHO05D003658 6.7e-06 56.2 98 27.6
Ca_01026_v3 Cicer arietinum L. HOM05D007028 ORTHO05D003658 8.7e-06 55.8 84 32.1
Nitab4.5_0000045g0190 Nicotiana tabacum HOM05D007028 ORTHO05D003658 8.7e-06 55.8 109 29.4


User provided reference genes

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