Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen12g001140 Solanum pennellii HOM05D006458 ORTHO05D008433 1.1e-83 313.2 147 100.0
PGSC0003DMG400001097 Solanum tuberosum HOM05D006458 ORTHO05D008433 1.6e-82 309.3 147 98.6
Solyc12g005150.2 Solanum lycopersicum HOM05D006458 ORTHO05D008433 7.9e-82 307.0 147 98.6
Nitab4.5_0000653g0030 Nicotiana tabacum HOM05D006458 ORTHO05D008433 3.7e-71 271.6 149 85.2
Nitab4.5_0000749g0130 Nicotiana tabacum HOM05D006458 ORTHO05D008433 1.8e-70 269.2 149 85.9
CAN.G416.46 Capsicum annuum HOM05D006458 ORTHO05D008433 4.0e-70 268.1 148 87.8
Dinv22275 Davidia involucrata HOM05D006458 ORTHO05D008433 8.7e-65 250.4 147 78.2
Cc05_g13560 Coffea canephora HOM05D006458 ORTHO05D008433 2.5e-64 248.8 150 78.0
Peaxi162Scf00450g00732 Petunia axillaris HOM05D006458 ORTHO05D008433 1.3e-63 246.5 147 77.6
Lalb_Chr15g0081001 Lupinus albus HOM05D006458 ORTHO05D008433 2.2e-63 245.7 147 76.9
Lj1A870G91 Lonicera japonica HOM05D006458 ORTHO05D008433 2.8e-63 245.4 147 75.5
CiPaw.12G128400 Carya illinoinensis HOM05D006458 ORTHO05D008433 6.3e-63 244.2 148 77.7
CSS0025826 Camellia sinensis var. sinensis HOM05D006458 ORTHO05D008433 1.1e-62 243.4 144 79.2
Nitab4.5_0004336g0030 Nicotiana tabacum HOM05D006458 ORTHO05D008433 1.1e-62 243.4 147 78.9
arahy.Tifrunner.gnm1.ann1.717SVK Arachis hypogaea HOM05D006458 ORTHO05D008433 1.4e-62 243.0 130 85.4
CSS0046732 Camellia sinensis var. sinensis HOM05D006458 ORTHO05D008433 1.8e-62 242.7 154 75.3
Nitab4.5_0001604g0080 Nicotiana tabacum HOM05D006458 ORTHO05D008433 3.1e-62 241.9 148 77.0
SGA_v2.0_scaffold7G03986 Striga asiatica HOM05D006458 ORTHO05D008433 3.1e-62 241.9 150 74.0
Sed0021211 Sechium edule HOM05D006458 ORTHO05D008433 5.3e-62 241.1 147 75.5
arahy.Tifrunner.gnm1.ann1.JDXG8H Arachis hypogaea HOM05D006458 ORTHO05D008433 6.9e-62 240.7 130 84.6
Hma1.2p1_0673F.1_g201190 Hydrangea macrophylla HOM05D006458 ORTHO05D008433 2.0e-61 239.2 136 80.9
MSTRG.15157 Avicennia marina HOM05D006458 ORTHO05D008433 2.6e-61 238.8 147 74.1
Cfa020375 Carpinus fangiana HOM05D006458 ORTHO05D008433 2.6e-61 238.8 147 74.8
DCAR_010044 Daucus carota HOM05D006458 ORTHO05D008433 2.6e-61 238.8 136 79.4
Duzib170G0083 Durio zibethinus HOM05D006458 ORTHO05D008433 3.4e-61 238.4 147 72.1
Duzib170G1029 Durio zibethinus HOM05D006458 ORTHO05D008433 3.4e-61 238.4 147 72.1
Medtr3g051110 Medicago truncatula HOM05D006458 ORTHO05D008433 3.4e-61 238.4 148 75.7
Potri.011G137100 Populus trichocarpa HOM05D006458 ORTHO05D008433 3.4e-61 238.4 147 73.5
SalBow5G1944 Salvia bowleyana HOM05D006458 ORTHO05D008433 3.4e-61 238.4 141 76.6
Migut.M01780 Erythranthe guttata HOM05D006458 ORTHO05D008433 4.5e-61 238.0 145 76.6
GSVIVG01037612001 Vitis vinifera HOM05D006458 ORTHO05D008433 4.5e-61 238.0 125 83.2
Glyma.18G099800 Glycine max HOM05D006458 ORTHO05D008433 5.9e-61 237.7 141 78.0
Sabra16G0288000 Salix brachista HOM05D006458 ORTHO05D008433 5.9e-61 237.7 147 73.5
Prupe.4G210000 Prunus persica HOM05D006458 ORTHO05D008433 7.6e-61 237.3 148 76.4
Gorai.013G160500 Gossypium raimondii HOM05D006458 ORTHO05D008433 1.0e-60 236.9 147 70.7
Manes.03G125000 Manihot esculenta HOM05D006458 ORTHO05D008433 1.0e-60 236.9 128 82.0
Glyma.08G314400 Glycine max HOM05D006458 ORTHO05D008433 1.3e-60 236.5 141 78.0
Dinv40738 Davidia involucrata HOM05D000653 ORTHO05D008581 1.7e-60 236.1 138 77.5
QL08p011516 Quercus lobata HOM05D006458 ORTHO05D008433 1.7e-60 236.1 125 83.2
Duzib170G0736 Durio zibethinus HOM05D006458 ORTHO05D008433 2.2e-60 235.7 147 71.4
Phvul.006G040400 Phaseolus vulgaris HOM05D006458 ORTHO05D008433 2.2e-60 235.7 130 82.3
ClCG10G005510 Citrullus lanatus HOM05D006458 ORTHO05D008433 2.9e-60 235.3 147 74.1
Gohir.A13G138900 Gossypium hirsutum HOM05D006458 ORTHO05D008433 2.9e-60 235.3 147 70.1
CANSAT11G2101 Cannabis sativa HOM05D006458 ORTHO05D008433 3.8e-60 235.0 139 77.7
CsaV3_3G005240 Cucumis sativus L. HOM05D006458 ORTHO05D008433 3.8e-60 235.0 141 75.9
VMungo0540G0475 Vigna mungo HOM05D006458 ORTHO05D008433 3.8e-60 235.0 134 80.6
Lj6g0005932 Lotus japonicus HOM05D006458 ORTHO05D008433 5.0e-60 234.6 147 75.5
Phvul.005G120100 Phaseolus vulgaris HOM05D006458 ORTHO05D008433 5.0e-60 234.6 133 80.5
Ca_14717_v3 Cicer arietinum L. HOM05D006458 ORTHO05D008433 6.5e-60 234.2 148 75.0
TWI39G1057 Tripterygium wilfordii HOM05D006458 ORTHO05D008433 1.4e-59 233.0 146 72.6
Lsat_1_v5_gn_7_109420 Lactuca sativa HOM05D006458 ORTHO05D008433 1.9e-59 232.6 140 76.4
MD11G1221600 Malus domestica HOM05D006458 ORTHO05D008433 1.9e-59 232.6 134 76.9
Hma1.2p1_1271F.1_g271730 Hydrangea macrophylla HOM05D006458 ORTHO05D008433 2.5e-59 232.3 126 82.5
Thecc.07G043100 Theobroma cacao HOM05D006458 ORTHO05D008433 2.5e-59 232.3 128 79.7
FvH4_3g22360 Fragaria vesca HOM05D006458 ORTHO05D008433 5.5e-59 231.1 146 71.2
HanXRQChr11g0336301 Helianthus annuus HOM05D006458 ORTHO05D008433 5.5e-59 231.1 136 77.2
Actinidia05107 Actinidia chinensis HOM05D006458 ORTHO05D008433 7.2e-59 230.7 124 83.9
FAN11G3779 Fragaria x ananassa HOM05D006458 ORTHO05D008433 7.2e-59 230.7 146 71.2
TAR626G0847 Trochodendron aralioides HOM05D006458 ORTHO05D008433 1.2e-58 229.9 128 80.5
MD03G1206100 Malus domestica HOM05D006458 ORTHO05D008433 1.6e-58 229.6 140 76.4
TAR629G1817 Trochodendron aralioides HOM05D006458 ORTHO05D008433 2.1e-58 229.2 128 78.9
Gohir.D13G143700 Gossypium hirsutum HOM05D006458 ORTHO05D008433 2.7e-58 228.8 147 68.7
vmacro09731 Vaccinium macrocarpon HOM05D006458 ORTHO05D008433 3.6e-58 228.4 185 62.7
Psat5g192520 Pisum sativum HOM05D006458 ORTHO05D008433 6.1e-58 227.6 140 74.3
Ciclev10009738m.g Citrus clementina HOM05D006458 ORTHO05D008433 7.9e-58 227.3 125 80.0
Aqoxy2G01543 Aquilegia oxysepala HOM05D006458 ORTHO05D008433 1.0e-57 226.9 124 79.0
FAN21G0544 Fragaria x ananassa HOM05D006458 ORTHO05D008433 1.0e-57 226.9 146 71.2
COL.COLO4_09642 Corchorus olitorius HOM05D000451 ORTHO05D008433 1.8e-57 226.1 126 79.4
Cpa.g.sc97.30 Carica papaya HOM05D006458 ORTHO05D008433 3.9e-57 224.9 147 70.1
Haze_09655 Corylus avellana HOM05D000653 ORTHO05D008581 6.7e-57 224.2 140 72.9
Gorai.002G087500 Gossypium raimondii HOM05D006458 ORTHO05D008433 6.7e-57 224.2 145 66.2
PGR031G1917 Punica granatum HOM05D006458 ORTHO05D008433 8.8e-57 223.8 142 73.2
Gohir.D01G065600 Gossypium hirsutum HOM05D006458 ORTHO05D008433 1.1e-56 223.4 145 66.2
PSO541G1528 Papaver somniferum HOM05D006458 ORTHO05D008433 1.1e-56 223.4 130 76.9
PSO675G3423 Papaver somniferum HOM05D006458 ORTHO05D008433 3.3e-56 221.9 130 76.9
RcHm_v2.0_Chr5g0038891 Rosa chinensis HOM05D006458 ORTHO05D008433 3.3e-56 221.9 148 70.3
Sc03g0008720 Simmondsia chinensis HOM05D006458 ORTHO05D008433 3.3e-56 221.9 147 70.1
Gohir.A01G078500 Gossypium hirsutum HOM05D006458 ORTHO05D008433 7.4e-56 220.7 145 66.2
Zm00001eb178010 Zea mays HOM05D006458 ORTHO05D008433 7.4e-56 220.7 141 68.1
Thhalv10014954m.g Eutrema salsugineum HOM05D006458 ORTHO05D008433 1.3e-55 219.9 145 67.6
MBI18_g24806_MAGBIO Magnolia biondii HOM05D006458 ORTHO05D008433 1.4e-54 216.5 142 69.0
SalBow7G4274 Salvia bowleyana HOM05D006458 ORTHO05D008433 1.8e-54 216.1 168 61.3
CDE05G1373 Ceratophyllum demersum HOM05D006458 ORTHO05D008433 3.1e-54 215.3 145 66.9
RhsimUnG0251700 Rhododendron simsii HOM05D006458 ORTHO05D008433 6.9e-54 214.2 208 52.9
Sp6g16820 Schrenkiella parvula HOM05D006458 ORTHO05D008433 6.9e-54 214.2 146 67.1
BraA10t43315Z Brassica rapa HOM05D006458 ORTHO05D008433 1.2e-53 213.4 146 66.4
BcaC04g20291 Brassica carinata HOM05D006458 ORTHO05D008433 2.0e-53 212.6 146 66.4
THA.LOC104817659 Tarenaya hassleriana HOM05D006458 ORTHO05D008433 2.0e-53 212.6 138 69.6
Carub.0008s1515 Capsella rubella HOM05D006458 ORTHO05D008433 2.6e-53 212.2 147 67.3
AT5G54855 Arabidopsis thaliana HOM05D006458 ORTHO05D008433 3.4e-53 211.8 137 70.8
A10p12190 Brassica napus HOM05D006458 ORTHO05D008433 3.4e-53 211.8 146 66.4
AL8G30300 Arabidopsis lyrata HOM05D006458 ORTHO05D008433 4.5e-53 211.5 124 75.0
CARHR268190 Cardamine hirsuta HOM05D006458 ORTHO05D008433 4.5e-53 211.5 124 75.0
BcaB08g35852 Brassica carinata HOM05D006458 ORTHO05D008433 5.9e-53 211.1 146 65.8
ATR0752G141 Amborella trichopoda HOM05D006458 ORTHO05D008433 7.7e-53 210.7 122 73.0
Os02g0317800 Oryza sativa ssp. japonica HOM05D006458 ORTHO05D008433 7.7e-53 210.7 138 67.4
AUR62020475 Chenopodium quinoa HOM05D006458 ORTHO05D008433 2.2e-52 209.1 140 69.3
AUR62015736 Chenopodium quinoa HOM05D006458 ORTHO05D008433 2.9e-52 208.8 136 72.1
Aa31LG3G10770 Aethionema arabicum HOM05D006458 ORTHO05D008433 5.0e-52 208.0 123 73.2
C09p45410 Brassica napus HOM05D006458 ORTHO05D008433 8.5e-52 207.2 147 65.3
EL10Ac4g07850 Beta vulgaris HOM05D006458 ORTHO05D008433 2.5e-51 205.7 143 67.1
Ah.04g165770 Amaranthus hybridus HOM05D006458 ORTHO05D008433 5.5e-51 204.5 138 67.4
CDE02G3449 Ceratophyllum demersum HOM05D006458 ORTHO05D008433 1.2e-50 203.4 128 70.3
Hund02079 Selenicereus undatus HOM05D006458 ORTHO05D008433 3.6e-50 201.8 137 66.4
unitig_8.g4602 Utricularia gibba HOM05D006458 ORTHO05D008433 3.0e-49 198.7 146 63.0
HPP92_005293 Vanilla planifolia HOM05D006458 ORTHO05D008433 5.1e-49 198.0 134 65.7
CSS0035522 Camellia sinensis var. sinensis HOM05D006458 ORTHO05D008433 7.4e-48 194.1 122 77.0
Nn1g03576 Nelumbo nucifera HOM05D006458 ORTHO05D008433 4.8e-47 191.4 109 78.0
Sabra11G0123000 Salix brachista HOM05D006458 ORTHO05D008433 6.3e-47 191.0 178 53.4
ECA236G2465 Erigeron canadensis HOM05D000653 ORTHO05D008581 2.5e-43 179.1 96 83.3
Eucgr.F03456 Eucalyptus grandis HOM05D006458 ORTHO05D008433 4.7e-42 174.9 93 83.9
MELO3C031911.2 Cucumis melo HOM05D006458 ORTHO05D008433 8.0e-42 174.1 101 79.2
Oeu062597.2 Olea europaea HOM05D006458 ORTHO05D008433 1.1e-40 170.2 94 79.8
SalBow7G3069 Salvia bowleyana HOM05D006458 ORTHO05D008433 2.8e-39 165.6 96 77.1
Atru.chr2.3327 Acer truncatum HOM05D006458 ORTHO05D008433 9.1e-38 160.6 96 78.1
Nitab4.5_0000296g0120 Nicotiana tabacum HOM05D006458 ORTHO05D008433 3.8e-36 155.2 97 73.2
SEGI_29279 Sequoiadendron giganteum HOM05D006458 ORTHO05D008433 2.2e-31 139.4 90 71.1
AUR62029374 Chenopodium quinoa HOM05D001363 ORTHO05D006255 7.2e-19 97.8 109 50.5
Atru.chr2.3388 Acer truncatum HOM05D006458 ORTHO05D008433 8.9e-17 90.9 83 55.4
MD01G1183100 Malus domestica HOM05D005560 ORTHO05D006862 1.6e-13 80.1 43 76.7
TPR.G13209 Trifolium pratense HOM05D006458 ORTHO05D008433 6.8e-09 64.7 52 57.7
RcHm_v2.0_Chr5g0038871 Rosa chinensis HOM05D006458 ORTHO05D008433 2.0e-08 63.2 39 61.5
FAN25G2931 Fragaria x ananassa HOM05D006458 ORTHO05D008433 3.4e-08 62.4 34 85.3
A06p35450 Brassica napus HOM05D006458 ORTHO05D041657 8.3e-07 57.8 39 61.5
BraA06t26468Z Brassica rapa HOM05D006458 ORTHO05D041657 8.3e-07 57.8 39 61.5
MD13G1229600 Malus domestica HOM05D006458 ORTHO05D245398 3.2e-06 55.8 42 61.9
Nitab4.5_0000286g0120 Nicotiana tabacum HOM05D006458 ORTHO05D008433 5.4e-06 55.1 52 53.8


User provided reference genes

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