Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g030920 Solanum pennellii HOM05D004887 ORTHO05D006168 1.8e-201 705.7 358 100.0
Solyc11g073300.2 Solanum lycopersicum HOM05D004887 ORTHO05D006168 7.0e-201 703.7 358 99.4
Nitab4.5_0000610g0150 Nicotiana tabacum HOM05D004887 ORTHO05D006168 1.8e-188 662.5 358 93.9
CAN.G661.4 Capsicum annuum HOM05D004887 ORTHO05D006168 1.5e-187 659.4 357 92.4
Nitab4.5_0003782g0060 Nicotiana tabacum HOM05D004887 ORTHO05D006168 2.5e-174 615.5 358 89.4
Peaxi162Scf00406g00137 Petunia axillaris HOM05D004887 ORTHO05D006168 8.1e-173 610.5 358 87.7
Dinv32870 Davidia involucrata HOM05D004887 ORTHO05D006168 1.3e-165 586.6 351 83.5
Migut.D02114 Erythranthe guttata HOM05D004887 ORTHO05D006168 3.4e-163 578.6 358 81.6
Migut.G01105 Erythranthe guttata HOM05D004887 ORTHO05D006168 4.5e-163 578.2 351 82.6
Migut.G01142 Erythranthe guttata HOM05D004887 ORTHO05D006168 1.7e-162 576.2 351 82.3
Hma1.2p1_0624F.1_g191380 Hydrangea macrophylla HOM05D004887 ORTHO05D006168 5.4e-161 571.2 351 82.1
DCAR_018895 Daucus carota HOM05D004887 ORTHO05D006168 1.8e-159 566.2 345 79.7
Cc01_g12500 Coffea canephora HOM05D004887 ORTHO05D006168 1.3e-157 560.1 348 80.7
GSVIVG01025008001 Vitis vinifera HOM05D004887 ORTHO05D006168 1.4e-156 556.6 356 80.1
Cpa.g.sc190.13 Carica papaya HOM05D004887 ORTHO05D006168 1.8e-156 556.2 352 79.5
COL.COLO4_18471 Corchorus olitorius HOM05D004887 ORTHO05D006168 5.3e-156 554.7 348 81.0
Oeu041027.1 Olea europaea HOM05D004887 ORTHO05D006168 5.3e-156 554.7 358 78.8
PGR102G2111 Punica granatum HOM05D004887 ORTHO05D006168 9.0e-156 553.9 352 79.3
Prupe.6G081500 Prunus persica HOM05D004887 ORTHO05D006168 1.3e-154 550.1 353 78.5
MD11G1143700 Malus domestica HOM05D004887 ORTHO05D006168 4.9e-154 548.1 352 79.0
Migut.N02667 Erythranthe guttata HOM05D004887 ORTHO05D006168 7.1e-153 544.3 347 78.1
MD03G1097100 Malus domestica HOM05D004887 ORTHO05D006168 1.2e-152 543.5 352 78.4
Ciclev10028710m.g Citrus clementina HOM05D004887 ORTHO05D006168 3.5e-152 542.0 349 77.7
Glyma.11G141400 Glycine max HOM05D004887 ORTHO05D006168 6.0e-152 541.2 355 76.3
Actinidia37217 Actinidia chinensis HOM05D004887 ORTHO05D006168 3.0e-151 538.9 344 80.2
CiPaw.13G097700 Carya illinoinensis HOM05D004887 ORTHO05D006168 3.9e-151 538.5 354 77.4
MBI14_g18541_MAGBIO Magnolia biondii HOM05D004887 ORTHO05D006168 3.9e-151 538.5 358 77.7
Gohir.D03G128400 Gossypium hirsutum HOM05D004887 ORTHO05D006168 5.1e-151 538.1 348 78.7
Lalb_Chr01g0003761 Lupinus albus HOM05D004887 ORTHO05D006168 8.7e-151 537.3 354 76.8
Potri.001G237000 Populus trichocarpa HOM05D004887 ORTHO05D006168 8.7e-151 537.3 344 79.1
RcHm_v2.0_Chr5g0063631 Rosa chinensis HOM05D004887 ORTHO05D006168 8.7e-151 537.3 351 77.8
Gohir.A03G039700 Gossypium hirsutum HOM05D004887 ORTHO05D006168 1.1e-150 537.0 348 78.7
Thhalv10013947m.g Eutrema salsugineum HOM05D004887 ORTHO05D006168 1.9e-150 536.2 347 75.8
BcaC04g19652 Brassica carinata HOM05D004887 ORTHO05D006168 3.3e-150 535.4 347 75.2
C09p52470 Brassica napus HOM05D004887 ORTHO05D006168 3.3e-150 535.4 347 75.2
BolC9t58114H Brassica oleracea HOM05D004887 ORTHO05D006168 3.3e-150 535.4 347 75.2
arahy.Tifrunner.gnm1.ann1.31UC9J Arachis hypogaea HOM05D004887 ORTHO05D006168 4.3e-150 535.0 352 75.3
MSTRG.17840 Avicennia marina HOM05D004887 ORTHO05D006168 4.3e-150 535.0 350 77.1
BraA10t43799Z Brassica rapa HOM05D004887 ORTHO05D006168 4.3e-150 535.0 347 75.2
TAR369G0226 Trochodendron aralioides HOM05D004887 ORTHO05D006168 7.4e-150 534.3 355 76.3
FAN21G1310 Fragaria x ananassa HOM05D004887 ORTHO05D006168 9.6e-150 533.9 351 77.8
arahy.Tifrunner.gnm1.ann1.1V42NR Arachis hypogaea HOM05D004887 ORTHO05D006168 1.3e-149 533.5 352 75.0
Gorai.003G135100 Gossypium raimondii HOM05D004887 ORTHO05D006168 1.3e-149 533.5 348 78.2
Phvul.011G065900 Phaseolus vulgaris HOM05D004887 ORTHO05D006168 1.3e-149 533.5 355 74.9
A10p17180 Brassica napus HOM05D004887 ORTHO05D006168 1.6e-149 533.1 347 74.9
FvH4_3g35470 Fragaria vesca HOM05D004887 ORTHO05D006168 2.1e-149 532.7 351 77.8
TPR.G10217 Trifolium pratense HOM05D004887 ORTHO05D006168 2.1e-149 532.7 355 74.4
VMungo1127G0043 Vigna mungo HOM05D004887 ORTHO05D006168 2.8e-149 532.3 355 74.6
AT5G59960 Arabidopsis thaliana HOM05D004887 ORTHO05D006168 3.7e-149 531.9 348 75.9
BcaB08g36206 Brassica carinata HOM05D004887 ORTHO05D006168 4.8e-149 531.6 347 74.6
Lj3g0008400 Lotus japonicus HOM05D004887 ORTHO05D006168 6.2e-149 531.2 355 75.2
Medtr4g063570 Medicago truncatula HOM05D004887 ORTHO05D006168 1.4e-148 530.0 355 73.8
Sp6g21640 Schrenkiella parvula HOM05D004887 ORTHO05D006168 1.8e-148 529.6 347 74.9
Aqoxy4G02983 Aquilegia oxysepala HOM05D004887 ORTHO05D006168 3.1e-148 528.9 350 77.4
Manes.11G133000 Manihot esculenta HOM05D004887 ORTHO05D006168 6.9e-148 527.7 348 76.1
CANSAT54G1644 Cannabis sativa HOM05D004887 ORTHO05D006168 9.0e-148 527.3 363 73.8
Eucgr.B02388 Eucalyptus grandis HOM05D004887 ORTHO05D006168 9.0e-148 527.3 352 74.7
Duzib150G1309 Durio zibethinus HOM05D004887 ORTHO05D006168 1.2e-147 526.9 348 77.9
Hund18927 Selenicereus undatus HOM05D004887 ORTHO05D006168 2.6e-147 525.8 356 74.7
Manes.04G032300 Manihot esculenta HOM05D004887 ORTHO05D006168 4.5e-147 525.0 348 76.1
HanXRQChr04g0107001 Helianthus annuus HOM05D004887 ORTHO05D006168 5.8e-147 524.6 342 76.6
EL10Ac7g15978 Beta vulgaris HOM05D004887 ORTHO05D006168 7.6e-147 524.2 354 74.3
THA.LOC104799466 Tarenaya hassleriana HOM05D004887 ORTHO05D006168 1.3e-146 523.5 350 75.1
A03p11380 Brassica napus HOM05D004887 ORTHO05D006168 1.7e-146 523.1 347 74.6
Nn2g12934 Nelumbo nucifera HOM05D004887 ORTHO05D006168 2.9e-146 522.3 355 76.1
PSO384G2944 Papaver somniferum HOM05D004887 ORTHO05D006168 3.8e-146 521.9 358 72.9
Potri.009G028500 Populus trichocarpa HOM05D004887 ORTHO05D006168 8.4e-146 520.8 344 76.5
ECA247G3571 Erigeron canadensis HOM05D004887 ORTHO05D006168 1.1e-145 520.4 348 75.6
Glyma.12G064800 Glycine max HOM05D004887 ORTHO05D006168 1.4e-145 520.0 355 74.4
Gorai.004G004400 Gossypium raimondii HOM05D004887 ORTHO05D006168 1.9e-145 519.6 345 75.1
HanXRQChr06g0175771 Helianthus annuus HOM05D004887 ORTHO05D006168 2.5e-145 519.2 344 76.5
CsaV3_1G033620 Cucumis sativus L. HOM05D004887 ORTHO05D006168 4.2e-145 518.5 350 74.9
AL8G36530 Arabidopsis lyrata HOM05D004887 ORTHO05D006168 7.1e-145 517.7 375 70.9
PSO339G5095 Papaver somniferum HOM05D004887 ORTHO05D006168 2.1e-144 516.2 358 72.3
AL781U10010 Arabidopsis lyrata HOM05D004887 ORTHO05D006168 2.7e-144 515.8 339 75.8
Aa31LG1G12090 Aethionema arabicum HOM05D004887 ORTHO05D006168 4.6e-144 515.0 348 74.4
Gohir.D08G010900 Gossypium hirsutum HOM05D004887 ORTHO05D006168 4.6e-144 515.0 344 75.0
Lsat_1_v5_gn_8_77921 Lactuca sativa HOM05D004887 ORTHO05D006168 1.8e-143 513.1 339 74.9
Lsat_1_v5_gn_9_22360 Lactuca sativa HOM05D004887 ORTHO05D006168 5.1e-143 511.5 339 74.6
SalBow3G3342 Salvia bowleyana HOM05D004887 ORTHO05D006168 2.5e-142 509.2 370 71.1
Sc21g0005570 Simmondsia chinensis HOM05D004887 ORTHO05D006168 2.5e-142 509.2 359 72.1
Duzib168G0637 Durio zibethinus HOM05D004887 ORTHO05D006168 4.1e-140 501.9 345 75.7
HPP92_015526 Vanilla planifolia HOM05D004887 ORTHO05D006168 1.5e-139 500.0 353 71.7
ClCG03G001950 Citrullus lanatus HOM05D004887 ORTHO05D006168 3.4e-139 498.8 376 69.4
arahy.Tifrunner.gnm1.ann1.LTG2DU Arachis hypogaea HOM05D004887 ORTHO05D006168 7.6e-139 497.7 374 67.1
Os01g0151600 Oryza sativa ssp. japonica HOM05D004887 ORTHO05D006168 5.0e-138 495.0 352 70.2
CSS0023093 Camellia sinensis var. sinensis HOM05D004887 ORTHO05D006168 1.1e-134 483.8 338 74.9
SGA_v2.0_scaffold61G21266 Striga asiatica HOM05D004887 ORTHO05D006168 2.2e-133 479.6 340 74.4
Lj1A157T41 Lonicera japonica HOM05D004887 ORTHO05D006168 3.7e-133 478.8 317 76.0
Zm00001eb124290 Zea mays HOM05D004887 ORTHO05D006168 1.1e-132 477.2 345 67.2
CSS0048955 Camellia sinensis var. sinensis HOM05D004887 ORTHO05D006168 2.4e-132 476.1 358 70.4
TWI79G0894 Tripterygium wilfordii HOM05D004887 ORTHO05D006168 6.9e-132 474.6 294 77.6
Rhsim13G0085300 Rhododendron simsii HOM05D001446 ORTHO05D001360 1.7e-130 469.9 388 63.1
AUR62009609 Chenopodium quinoa HOM05D004887 ORTHO05D006168 7.2e-129 464.5 313 76.0
Psat7g217880 Pisum sativum HOM05D004887 ORTHO05D006168 3.6e-128 462.2 383 64.2
Atru.chr3.3838 Acer truncatum HOM05D004887 ORTHO05D006168 5.7e-126 454.9 297 78.8
Cfa011464 Carpinus fangiana HOM05D004887 ORTHO05D006168 9.7e-126 454.1 345 69.3
FAN11G2539 Fragaria x ananassa HOM05D004887 ORTHO05D006168 9.7e-126 454.1 341 71.3
QL01p032955 Quercus lobata HOM05D004887 ORTHO05D006168 2.8e-125 452.6 339 70.2
Haze_24049 Corylus avellana HOM05D004887 ORTHO05D006168 6.9e-124 448.0 297 76.4
arahy.Tifrunner.gnm1.ann1.RHUE9Y Arachis hypogaea HOM05D004887 ORTHO05D006168 9.1e-124 447.6 303 71.0
MELO3C020709.2 Cucumis melo HOM05D004887 ORTHO05D006168 2.0e-123 446.4 296 74.3
FAN25G2556 Fragaria x ananassa HOM05D004887 ORTHO05D006168 2.0e-123 446.4 341 70.1
Sed0009981 Sechium edule HOM05D004887 ORTHO05D006168 2.5e-121 439.5 277 76.2
Duzib170G0837 Durio zibethinus HOM05D004887 ORTHO05D006168 6.1e-120 434.9 356 65.7
AUR62001822 Chenopodium quinoa HOM05D004887 ORTHO05D006168 1.0e-119 434.1 296 75.0
unitig_899.g14894 Utricularia gibba HOM05D004887 ORTHO05D006168 9.7e-118 427.6 306 69.9
Carub.0008s2049 Capsella rubella HOM05D004887 ORTHO05D006168 4.8e-117 425.2 253 81.8
CDE07G1169 Ceratophyllum demersum HOM05D004887 ORTHO05D006168 2.4e-116 422.9 348 65.5
BraA03t10452Z Brassica rapa HOM05D004887 ORTHO05D006168 4.1e-116 422.2 253 80.6
THA.LOC104810819 Tarenaya hassleriana HOM05D004887 ORTHO05D006168 4.1e-116 422.2 297 72.1
ATR0559G318 Amborella trichopoda HOM05D004887 ORTHO05D006168 6.5e-114 414.8 300 70.3
TWI31G1179 Tripterygium wilfordii HOM05D004887 ORTHO05D006168 2.6e-110 402.9 344 63.1
Lj2C1057T15 Lonicera japonica HOM05D004887 ORTHO05D006168 7.0e-108 394.8 231 82.7
Actinidia07046 Actinidia chinensis HOM05D004887 ORTHO05D006168 2.0e-107 393.3 255 78.0
Psat7g218040 Pisum sativum HOM05D004887 ORTHO05D006168 6.5e-106 388.3 289 66.8
Pp3c8_24390 Physcomitrium patens HOM05D004887 ORTHO05D006168 3.0e-103 379.4 342 55.0
FAN16G2077 Fragaria x ananassa HOM05D001446 ORTHO05D001360 2.0e-102 376.7 259 76.8
Dinv03548 Davidia involucrata HOM05D004887 ORTHO05D006168 5.7e-102 375.2 234 81.6
Pp3c24_20310 Physcomitrium patens HOM05D004887 ORTHO05D006168 7.5e-102 374.8 342 55.0
TAR623G0510 Trochodendron aralioides HOM05D004887 ORTHO05D006168 2.0e-99 366.7 256 75.4
Thecc.09G325700 Theobroma cacao HOM05D004887 ORTHO05D006168 4.5e-99 365.5 248 77.8
SMO118G0033 Selaginella moellendorffii HOM05D004887 ORTHO05D006168 1.3e-98 364.0 327 57.2
Sabra16G0142900 Salix brachista HOM05D001446 ORTHO05D001360 2.3e-98 363.2 387 55.3
Ca_19183_v3 Cicer arietinum L. HOM05D004887 ORTHO05D006168 1.0e-95 354.4 254 72.0
Mapoly0001s0555 Marchantia polymorpha HOM05D004887 ORTHO05D006168 6.8e-95 351.7 342 52.3
vmacro03096 Vaccinium macrocarpon HOM05D004887 ORTHO05D006168 4.4e-94 349.0 303 61.7
SalBow2G3032 Salvia bowleyana HOM05D004887 ORTHO05D006168 8.6e-90 334.7 261 67.0
AagrBONN_evm.TU.Sc2ySwM_344.5355 Anthoceros agrestis HOM05D004887 ORTHO05D006168 1.8e-87 327.0 294 53.4
Nitab4.5_0000610g0050 Nicotiana tabacum HOM05D004887 ORTHO05D006168 8.9e-87 324.7 373 54.4
Nn2g10420 Nelumbo nucifera HOM05D004887 ORTHO05D006168 1.2e-86 324.3 226 74.8
CARHR273590 Cardamine hirsuta HOM05D004887 ORTHO05D006168 2.3e-82 310.1 189 79.9
CBR_g46654 Chara braunii HOM05D004887 ORTHO05D006168 3.1e-79 299.7 318 47.8
Gohir.A08G000181 Gossypium hirsutum HOM05D004887 ORTHO05D006168 2.6e-78 296.6 226 67.7
Psat7g218000 Pisum sativum HOM05D004887 ORTHO05D006168 2.8e-72 276.6 188 71.3
CARHR273600 Cardamine hirsuta HOM05D004887 ORTHO05D006168 1.9e-57 227.3 159 72.3
PSO384G0451 Papaver somniferum HOM05D004887 ORTHO05D006168 4.3e-57 226.1 199 61.8
Sabra09G0019700 Salix brachista HOM05D004887 ORTHO05D006168 2.1e-43 180.6 172 58.7
Carub.0008s2068 Capsella rubella HOM05D004887 ORTHO05D006168 2.6e-30 137.1 97 68.0
C06p04980 Brassica napus HOM05D004887 ORTHO05D006168 4.6e-27 126.3 72 77.8
BolC6t35622H Brassica oleracea HOM05D004887 ORTHO05D006168 7.9e-27 125.6 73 79.5
A02p35440 Brassica napus HOM05D004887 ORTHO05D006168 1.0e-26 125.2 72 77.8
BraA02t08545Z Brassica rapa HOM05D004887 ORTHO05D006168 1.0e-26 125.2 72 77.8
C03p13170 Brassica napus HOM05D004887 ORTHO05D006168 2.3e-26 124.0 72 79.2
BolC3t13778H Brassica oleracea HOM05D004887 ORTHO05D006168 6.3e-24 115.9 63 82.5
Duzib205G1865 Durio zibethinus HOM05D004887 ORTHO05D006168 8.2e-24 115.5 136 52.2
C03p13130 Brassica napus HOM05D004887 ORTHO05D006168 5.1e-18 96.3 94 52.1
HanXRQChr07g0192801 Helianthus annuus HOM05D004887 ORTHO05D225384 1.7e-08 64.7 50 66.0
Lj1A771T11 Lonicera japonica HOM05D004887 ORTHO05D234499 1.4e-07 61.6 40 72.5


User provided reference genes

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