Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen11g030610 Solanum pennellii HOM05D005589 ORTHO05D006948 0.0e+00 1535.8 817 100.0
Solyc11g072950.3 Solanum lycopersicum HOM05D005589 ORTHO05D006948 0.0e+00 1517.7 817 98.9
Nitab4.5_0002684g0170 Nicotiana tabacum HOM05D005589 ORTHO05D006948 0.0e+00 1382.5 817 89.1
Nitab4.5_0007030g0040 Nicotiana tabacum HOM05D005589 ORTHO05D006948 0.0e+00 1371.7 817 88.9
PGSC0003DMG400015549 Solanum tuberosum HOM05D005589 ORTHO05D006948 0.0e+00 1338.9 817 88.9
CAN.G755.19 Capsicum annuum HOM05D005589 ORTHO05D006948 0.0e+00 1333.9 811 87.8
Peaxi162Scf00411g00711 Petunia axillaris HOM05D005589 ORTHO05D006948 0.0e+00 1298.1 825 84.2
Cc01_g12110 Coffea canephora HOM05D005589 ORTHO05D006948 0.0e+00 1145.6 822 74.3
Lj1A176T55 Lonicera japonica HOM05D005589 ORTHO05D006948 0.0e+00 1132.9 819 73.4
CSS0045601 Camellia sinensis var. sinensis HOM05D005589 ORTHO05D006948 0.0e+00 1128.6 820 72.9
Cfa011427 Carpinus fangiana HOM05D005589 ORTHO05D006948 0.0e+00 1119.8 820 71.1
GSVIVG01025056001 Vitis vinifera HOM05D005589 ORTHO05D006948 0.0e+00 1117.8 819 71.4
Ciclev10027829m.g Citrus clementina HOM05D005589 ORTHO05D006948 0.0e+00 1117.1 820 71.2
Atru.chr3.3796 Acer truncatum HOM05D005589 ORTHO05D006948 0.0e+00 1112.8 820 70.6
Oeu040274.2 Olea europaea HOM05D005589 ORTHO05D006948 0.0e+00 1107.0 843 71.1
CiPaw.13G101800 Carya illinoinensis HOM05D005589 ORTHO05D006948 0.0e+00 1105.1 819 71.8
Rhsim13G0088500 Rhododendron simsii HOM05D005589 ORTHO05D006948 0.0e+00 1102.0 821 71.0
Migut.D02148 Erythranthe guttata HOM05D005589 ORTHO05D006948 0.0e+00 1098.2 816 70.7
MD11G1116800 Malus domestica HOM05D005589 ORTHO05D006948 0.0e+00 1095.1 819 70.2
CSS0023618 Camellia sinensis var. sinensis HOM05D005589 ORTHO05D006948 0.0e+00 1094.0 820 71.3
Haze_24005 Corylus avellana HOM05D005589 ORTHO05D006948 0.0e+00 1092.4 856 68.2
RcHm_v2.0_Chr5g0062341 Rosa chinensis HOM05D005589 ORTHO05D006948 0.0e+00 1090.5 822 69.0
Dinv26284 Davidia involucrata HOM05D005589 ORTHO05D006948 0.0e+00 1088.6 787 73.2
MSTRG.21170 Avicennia marina HOM05D005589 ORTHO05D006948 0.0e+00 1084.7 818 70.2
Duzib168G1570 Durio zibethinus HOM05D005589 ORTHO05D006948 0.0e+00 1084.3 820 69.9
TWI31G1338 Tripterygium wilfordii HOM05D005589 ORTHO05D006948 0.0e+00 1084.3 817 71.0
Thecc.09G329900 Theobroma cacao HOM05D005589 ORTHO05D006948 0.0e+00 1080.9 819 69.2
DCAR_015589 Daucus carota HOM05D005589 ORTHO05D006948 0.0e+00 1075.5 828 69.8
FvH4_3g34630 Fragaria vesca HOM05D005589 ORTHO05D006948 5.6e-312 1074.7 819 68.3
MD03G1103200 Malus domestica HOM05D005589 ORTHO05D006948 5.6e-312 1074.7 818 69.1
FAN16G1588 Fragaria x ananassa HOM05D005589 ORTHO05D006948 1.7e-311 1072.4 819 68.0
FAN11G1618 Fragaria x ananassa HOM05D005589 ORTHO05D006948 6.7e-311 1070.5 819 68.4
Gohir.A05G098800 Gossypium hirsutum HOM05D005589 ORTHO05D006948 8.4e-311 1070.1 824 69.1
Gohir.D05G098801 Gossypium hirsutum HOM05D005589 ORTHO05D006948 9.4e-310 1066.6 824 68.7
Gorai.009G102500 Gossypium raimondii HOM05D005589 ORTHO05D006948 2.7e-309 1065.1 824 68.4
Hund05020 Selenicereus undatus HOM05D005589 ORTHO05D006948 2.7e-309 1065.1 816 69.6
SGA_v2.0_scaffold394G50722 Striga asiatica HOM05D005589 ORTHO05D006948 2.3e-308 1062.0 844 68.5
FAN25G3171 Fragaria x ananassa HOM05D005589 ORTHO05D006948 2.0e-307 1058.9 826 67.2
EL10Ac7g15939 Beta vulgaris HOM05D005589 ORTHO05D006948 1.8e-305 1052.4 816 68.6
Eucgr.J02099 Eucalyptus grandis HOM05D005589 ORTHO05D006948 5.3e-305 1050.8 826 67.1
COL.COLO4_18425 Corchorus olitorius HOM05D005589 ORTHO05D006948 7.0e-305 1050.4 820 68.3
Ah.08g215000 Amaranthus hybridus HOM05D005589 ORTHO05D006948 7.7e-304 1047.0 820 68.2
FAN21G0436 Fragaria x ananassa HOM05D005589 ORTHO05D006948 4.2e-302 1041.2 822 66.3
Ca_19212_v3 Cicer arietinum L. HOM05D005589 ORTHO05D006948 9.4e-302 1040.0 820 67.8
Prupe.6G087200 Prunus persica HOM05D005589 ORTHO05D006948 1.6e-301 1039.3 786 69.5
CANSAT54G1803 Cannabis sativa HOM05D005589 ORTHO05D006948 8.0e-301 1036.9 819 67.4
Potri.001G234300 Populus trichocarpa HOM05D005589 ORTHO05D006948 1.8e-300 1035.8 819 68.7
vmacro03127 Vaccinium macrocarpon HOM05D005589 ORTHO05D006948 8.8e-300 1033.5 822 67.8
Lsat_1_v5_gn_9_21601 Lactuca sativa HOM05D005589 ORTHO05D006948 2.8e-298 1028.5 815 67.2
Lj3g0027543 Lotus japonicus HOM05D005589 ORTHO05D006948 3.7e-298 1028.1 821 67.5
TPR.G2986 Trifolium pratense HOM05D005589 ORTHO05D006948 1.4e-297 1026.2 825 67.0
Psat7g220760 Pisum sativum HOM05D005589 ORTHO05D006948 2.9e-295 1018.5 820 66.8
Aqoxy2G01955 Aquilegia oxysepala HOM05D005589 ORTHO05D006948 9.5e-294 1013.4 821 64.9
Hma1.2p1_0846F.1_g227810 Hydrangea macrophylla HOM05D005589 ORTHO05D006948 9.5e-294 1013.4 756 70.8
Lalb_Chr19g0137591 Lupinus albus HOM05D005589 ORTHO05D006948 1.2e-293 1013.1 821 65.5
Phvul.011G069300 Phaseolus vulgaris HOM05D005589 ORTHO05D006948 2.1e-293 1012.3 820 65.9
VMungo1127G2244 Vigna mungo HOM05D005589 ORTHO05D006948 2.3e-292 1008.8 820 66.1
PGR119G2409 Punica granatum HOM05D005589 ORTHO05D006948 5.2e-292 1007.7 820 65.2
ClCG03G001750 Citrullus lanatus HOM05D005589 ORTHO05D006948 4.4e-291 1004.6 816 65.2
Sabra16G0140600 Salix brachista HOM05D005589 ORTHO05D006948 1.7e-290 1002.7 892 62.8
Glyma.12G074800 Glycine max HOM05D005589 ORTHO05D006948 1.1e-289 1000.0 820 65.4
Thhalv10002404m.g Eutrema salsugineum HOM05D005589 ORTHO05D006948 3.1e-289 998.4 821 64.6
TAR623G1588 Trochodendron aralioides HOM05D005589 ORTHO05D006948 4.1e-289 998.0 757 70.3
THA.LOC104799457 Tarenaya hassleriana HOM05D005589 ORTHO05D006948 1.6e-288 996.1 824 65.5
HanXRQChr08g0228221 Helianthus annuus HOM05D005589 ORTHO05D006948 3.5e-288 995.0 810 65.4
MBI05_g07866_MAGBIO Magnolia biondii HOM05D005589 ORTHO05D006948 1.0e-287 993.4 841 64.2
MELO3C020678.2 Cucumis melo HOM05D005589 ORTHO05D006948 1.3e-287 993.0 816 64.7
CsaV3_1G033840 Cucumis sativus L. HOM05D005589 ORTHO05D006948 1.3e-287 993.0 816 64.5
A06p20980 Brassica napus HOM05D005589 ORTHO05D006948 6.6e-287 990.7 821 64.3
Sed0009383 Sechium edule HOM05D005589 ORTHO05D006948 1.5e-286 989.6 815 64.8
ECA247G1976 Erigeron canadensis HOM05D005589 ORTHO05D006948 1.9e-286 989.2 815 65.2
Sp5g15410 Schrenkiella parvula HOM05D005589 ORTHO05D006948 9.5e-286 986.9 822 64.2
AUR62001854 Chenopodium quinoa HOM05D005589 ORTHO05D006948 1.2e-285 986.5 921 59.9
C03p70540 Brassica napus HOM05D005589 ORTHO05D006948 4.7e-285 984.6 821 63.8
Aa31LG4G15320 Aethionema arabicum HOM05D005589 ORTHO05D006948 3.1e-284 981.9 823 63.5
AL5G25010 Arabidopsis lyrata HOM05D005589 ORTHO05D006948 5.2e-284 981.1 822 64.2
Carub.0005s1206 Capsella rubella HOM05D005589 ORTHO05D006948 8.9e-284 980.3 822 63.9
AUR62009648 Chenopodium quinoa HOM05D005589 ORTHO05D006948 2.6e-283 978.8 828 64.7
Medtr4g062090 Medicago truncatula HOM05D005589 ORTHO05D006948 4.4e-283 978.0 823 65.0
AT3G46220 Arabidopsis thaliana HOM05D005589 ORTHO05D006948 1.1e-281 973.4 821 63.2
CARHR154660 Cardamine hirsuta HOM05D005589 ORTHO05D006948 1.4e-281 973.0 822 63.7
BolC3t19334H Brassica oleracea HOM05D005589 ORTHO05D006948 3.2e-281 971.8 837 62.6
PSO339G3114 Papaver somniferum HOM05D005589 ORTHO05D006948 1.3e-279 966.5 818 63.0
BraA06t25186Z Brassica rapa HOM05D005589 ORTHO05D006948 1.2e-277 959.9 864 60.9
PSO384G0870 Papaver somniferum HOM05D005589 ORTHO05D006948 2.8e-277 958.7 819 63.0
Manes.04G029200 Manihot esculenta HOM05D005589 ORTHO05D006948 9.8e-275 950.3 754 67.5
arahy.Tifrunner.gnm1.ann1.3ELA68 Arachis hypogaea HOM05D005589 ORTHO05D006948 1.6e-269 932.9 862 60.2
Os05g0117600 Oryza sativa ssp. japonica HOM05D005589 ORTHO05D006948 2.1e-256 889.4 818 57.8
Zm00001eb266020 Zea mays HOM05D005589 ORTHO05D006948 2.4e-252 875.9 822 57.1
unitig_37.g12679 Utricularia gibba HOM05D005589 ORTHO05D006948 2.2e-250 869.4 818 58.6
Thhalv10002414m.g Eutrema salsugineum HOM05D005589 ORTHO05D006948 2.7e-248 862.4 821 59.0
Sc21g0005390 Simmondsia chinensis HOM05D005589 ORTHO05D006948 2.1e-237 826.2 680 65.3
HPP92_025619 Vanilla planifolia HOM05D005589 ORTHO05D006948 4.3e-230 802.0 861 51.7
Cpa.g.sc252.12 Carica papaya HOM05D005589 ORTHO05D006948 1.3e-229 800.4 819 56.9
Actinidia07078 Actinidia chinensis HOM05D005589 ORTHO05D006948 1.2e-219 767.3 595 69.1
Glyma.11G145645 Glycine max HOM05D005589 ORTHO05D006948 5.0e-218 761.9 666 63.1
arahy.Tifrunner.gnm1.ann1.0DF5JX Arachis hypogaea HOM05D005589 ORTHO05D006948 3.6e-176 622.9 627 57.7
Pp3c8_20630 Physcomitrium patens HOM05D005589 ORTHO05D006948 5.0e-170 602.4 836 43.7
SMO196G0111 Selaginella moellendorffii HOM05D005589 ORTHO05D006948 5.0e-170 602.4 784 45.4
AagrBONN_evm.TU.Sc2ySwM_228.2492 Anthoceros agrestis HOM05D005589 ORTHO05D006948 7.5e-166 588.6 764 44.4
SalBow3G0177 Salvia bowleyana HOM05D005589 ORTHO05D006948 1.4e-156 557.8 490 63.5
BcaC01g01924 Brassica carinata HOM05D005589 ORTHO05D006948 1.2e-152 544.7 541 56.6
CBR_g777 Chara braunii HOM05D005589 ORTHO05D006948 3.0e-146 523.5 869 37.9
SalBow3G3271 Salvia bowleyana HOM05D005589 ORTHO05D006948 8.9e-143 511.9 324 78.4
Hma1.2p1_0846F.1_g227820 Hydrangea macrophylla HOM05D005589 ORTHO05D006948 4.4e-142 509.6 404 69.3
ATR0759G074 Amborella trichopoda HOM05D005589 ORTHO05D006948 2.9e-141 506.9 388 66.0
Mapoly0007s0143 Marchantia polymorpha HOM05D005589 ORTHO05D006948 4.9e-141 506.1 841 38.2
CBR_g29437 Chara braunii HOM05D005589 ORTHO05D006948 5.4e-140 502.7 821 38.7
Actinidia37259 Actinidia chinensis HOM05D005589 ORTHO05D006948 1.1e-111 408.7 271 73.8
AL1G56500 Arabidopsis lyrata HOM05D005589 ORTHO05D006948 9.3e-108 395.6 485 51.5
CDE02G1253 Ceratophyllum demersum HOM05D005589 ORTHO05D006948 1.1e-100 372.1 274 67.5
SEGI_37108 Sequoiadendron giganteum HOM05D005589 ORTHO05D006948 5.5e-92 343.2 275 58.9
AL1G56480 Arabidopsis lyrata HOM05D005589 ORTHO05D006948 3.9e-90 337.0 313 57.5
CSS0044614 Camellia sinensis var. sinensis HOM05D005589 ORTHO05D006948 7.7e-78 296.2 241 69.7
Cre16.g686650 Chlamydomonas reinhardtii HOM05D005589 ORTHO05D006948 2.5e-60 238.0 815 26.0
SEGI_34947 Sequoiadendron giganteum HOM05D005589 ORTHO05D006948 4.4e-57 227.3 352 42.6
CSS0011793 Camellia sinensis var. sinensis HOM05D005589 ORTHO05D006948 1.9e-44 185.3 163 60.1
PRCOL_00006228 Prasinoderma coloniale HOM05D005589 ORTHO05D006948 4.7e-43 180.6 837 22.6
arahy.Tifrunner.gnm1.ann1.35TLEJ Arachis hypogaea HOM05D005589 ORTHO05D006948 1.2e-41 176.0 219 49.3
Sc21g0005380 Simmondsia chinensis HOM05D005589 ORTHO05D006948 1.2e-38 166.0 125 69.6
BcaB01g01018 Brassica carinata HOM05D005589 ORTHO05D006948 5.1e-37 160.6 119 66.4
arahy.Tifrunner.gnm1.ann1.KKDX05 Arachis hypogaea HOM05D001394 ORTHO05D001237 1.5e-33 149.1 93 78.5
ATR0759G002 Amborella trichopoda HOM05D005589 ORTHO05D006948 1.9e-31 142.1 196 45.4
ATR0759G057 Amborella trichopoda HOM05D005589 ORTHO05D006948 1.0e-29 136.3 101 69.3
arahy.Tifrunner.gnm1.ann1.HF8MSC Arachis hypogaea HOM05D005589 ORTHO05D006948 3.1e-26 124.8 208 39.9
Actinidia37258 Actinidia chinensis HOM05D005589 ORTHO05D006948 2.0e-25 122.1 69 89.9
arahy.Tifrunner.gnm1.ann1.NIGF9J Arachis hypogaea HOM05D001394 ORTHO05D001237 7.1e-23 113.6 155 47.1
Actinidia37260 Actinidia chinensis HOM05D005589 ORTHO05D006948 2.1e-22 112.1 134 48.5
Gohir.D08G115100 Gossypium hirsutum HOM05D005589 ORTHO05D047064 1.9e-20 105.5 70 68.6
Gorai.004G124000 Gossypium raimondii HOM05D005589 ORTHO05D047064 1.9e-20 105.5 70 68.6
SEGI_32388 Sequoiadendron giganteum HOM05D005589 ORTHO05D006948 6.0e-14 84.0 61 70.5
arahy.Tifrunner.gnm1.ann1.DV3IGD Arachis hypogaea HOM05D005589 ORTHO05D006948 1.1e-12 79.7 86 58.1
HanXRQChr10g0314321 Helianthus annuus HOM05D005589 ORTHO05D006948 1.3e-11 76.3 68 61.8
arahy.Tifrunner.gnm1.ann1.LY30IG Arachis hypogaea HOM05D005589 ORTHO05D006948 4.8e-11 74.3 173 37.6
CDE02G0022 Ceratophyllum demersum HOM05D005589 ORTHO05D006948 3.8e-08 64.7 46 69.6


User provided reference genes

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